Wall clock time and date at job start Fri Apr 10 2020 22:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.46943 * 240.00224 * 2 1 3 5 5 C 1.50699 * 109.47240 * 60.00091 * 4 2 1 6 6 H 1.08003 * 119.99962 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00243 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99980 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46755 * 90.00221 * 9 7 5 11 11 H 1.48494 * 109.47308 * 209.99919 * 9 7 5 12 12 H 1.48496 * 109.47178 * 330.00271 * 9 7 5 13 13 C 1.52999 * 109.47317 * 120.00367 * 2 1 3 14 14 N 1.46506 * 109.46684 * 300.00056 * 13 2 1 15 15 C 1.34777 * 119.99873 * 180.02562 * 14 13 2 16 16 O 1.21592 * 119.99797 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99902 * 179.97438 * 15 14 13 18 18 C 1.47017 * 125.65079 * 0.02563 * 17 15 14 19 19 C 1.54320 * 107.27359 * 178.90328 * 18 17 15 20 20 C 1.55156 * 102.94329 * 337.80389 * 19 18 17 21 21 H 1.09003 * 111.00426 * 277.43295 * 20 19 18 22 22 C 1.53001 * 111.00525 * 153.61310 * 20 19 18 23 23 C 1.53786 * 113.61153 * 157.50111 * 22 20 19 24 24 C 1.53782 * 87.07482 * 220.01983 * 23 22 20 25 25 C 1.53777 * 113.61164 * 60.00396 * 22 20 19 26 26 C 1.47424 * 125.64802 * 179.71422 * 17 15 14 27 27 H 1.09002 * 109.47153 * 299.99992 * 1 2 3 28 28 H 1.09001 * 109.46832 * 59.99801 * 1 2 3 29 29 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47375 * 299.99867 * 3 2 1 32 32 H 1.09002 * 109.47497 * 60.00225 * 3 2 1 33 33 H 1.09000 * 109.46866 * 180.02562 * 4 2 1 34 34 H 1.08996 * 109.47261 * 299.99767 * 4 2 1 35 35 H 0.96992 * 120.00032 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47486 * 179.97438 * 13 2 1 37 37 H 1.09001 * 109.47362 * 59.99268 * 13 2 1 38 38 H 0.96995 * 120.00050 * 359.72237 * 14 13 2 39 39 H 1.09005 * 109.88208 * 298.31943 * 18 17 15 40 40 H 1.09000 * 109.88577 * 59.32386 * 18 17 15 41 41 H 1.08999 * 110.72292 * 96.16574 * 19 18 17 42 42 H 1.09001 * 110.72376 * 219.44129 * 19 18 17 43 43 H 1.08995 * 112.84851 * 288.80576 * 22 20 19 44 44 H 1.08994 * 113.61279 * 334.56234 * 23 22 20 45 45 H 1.09000 * 113.61620 * 105.47120 * 23 22 20 46 46 H 1.09008 * 113.61541 * 270.87745 * 24 23 22 47 47 H 1.09002 * 113.68793 * 139.99297 * 24 23 22 48 48 H 1.09007 * 113.61308 * 254.52420 * 25 22 20 49 49 H 1.08992 * 113.61864 * 25.34824 * 25 22 20 50 50 H 1.09009 * 110.36473 * 323.00294 * 26 17 15 51 51 H 1.09000 * 110.36746 * 85.32623 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9171 0.8676 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5509 -3.8527 9 14 1.2479 0.3987 -5.2572 10 1 2.2254 1.4411 -5.6612 11 1 1.0837 -0.5804 -6.3615 12 1 -0.0607 1.0353 -4.9614 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5767 -1.4795 3.7810 17 7 1.4288 0.1447 4.7699 18 6 0.5796 1.3448 4.7798 19 6 0.2985 1.6950 6.2562 20 6 0.5365 0.3460 6.9848 21 1 -0.3459 -0.2912 6.9253 22 6 0.9475 0.5741 8.4408 23 6 0.6743 -0.6325 9.3543 24 6 0.2242 0.3781 10.4224 25 6 -0.1031 1.3364 9.2652 26 6 1.7027 -0.2520 6.1631 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 -0.7216 -1.2491 34 1 1.6767 -1.7489 -1.2494 35 1 2.8615 -1.8822 -4.7337 36 1 3.1300 -0.7217 1.2490 37 1 1.6766 -1.7490 1.2492 38 1 0.9973 0.7603 2.3564 39 1 1.0999 2.1711 4.2954 40 1 -0.3565 1.1409 4.2600 41 1 0.9955 2.4537 6.6121 42 1 -0.7321 2.0261 6.3846 43 1 1.9554 0.9775 8.5378 44 1 -0.1288 -1.2773 8.9974 45 1 1.5729 -1.1857 9.6275 46 1 1.0347 0.7270 11.0625 47 1 -0.6524 0.0584 10.9859 48 1 0.1679 2.3729 9.4667 49 1 -1.1185 1.2310 8.8832 50 1 1.7129 -1.3383 6.2532 51 1 2.6524 0.1661 6.4969 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591195396.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:44 Heat of formation + Delta-G solvation = -50.693036 kcal Electronic energy + Delta-G solvation = -25920.374189 eV Core-core repulsion = 22432.578100 eV Total energy + Delta-G solvation = -3487.796090 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48703 -40.14308 -38.83636 -37.72680 -35.26110 -34.01821 -32.43312 -30.21541 -29.09041 -27.97109 -27.76746 -26.44270 -25.94638 -24.72498 -23.70429 -21.53170 -21.02506 -20.33332 -19.98246 -18.85690 -18.35514 -17.41625 -17.00633 -16.51058 -16.32056 -16.13475 -15.67767 -15.29007 -14.88326 -14.81844 -14.54619 -14.31952 -14.14156 -13.94027 -13.91915 -13.70849 -13.36329 -13.20830 -12.89599 -12.84870 -12.72392 -12.66403 -12.58667 -12.34198 -12.22574 -11.97735 -11.88639 -11.62264 -11.54466 -11.43369 -11.31193 -11.02330 -10.93466 -10.89682 -10.84889 -10.50697 -10.23196 -9.48815 -8.13043 -6.21104 1.43203 1.43973 1.54187 1.59458 2.09844 2.44932 3.04045 3.21170 3.43234 3.64691 3.74831 3.92854 3.96009 4.02625 4.07928 4.21653 4.22673 4.25333 4.32807 4.43994 4.62036 4.67063 4.69118 4.71823 4.76283 4.86751 4.92412 4.95398 4.96604 4.97444 5.02509 5.08718 5.10909 5.11780 5.16178 5.23059 5.27301 5.36681 5.39354 5.48181 5.49629 5.49898 5.53019 5.58570 5.70986 5.80108 5.90287 6.04769 6.31089 6.93152 6.97754 7.46454 7.52973 8.99505 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.040728 B = 0.002269 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.315804 B =12336.396262 C =12727.739720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C -0.120 4.120 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.074 0.926 7 C -0.008 4.008 8 N -0.939 5.939 9 Si 0.961 3.039 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.258 1.258 13 C 0.161 3.839 14 N -0.721 5.721 15 C 0.711 3.289 16 O -0.643 6.643 17 N -0.638 5.638 18 C 0.088 3.912 19 C -0.111 4.111 20 C -0.079 4.079 21 H 0.083 0.917 22 C -0.097 4.097 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.126 4.126 26 C 0.125 3.875 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.058 0.942 32 H 0.067 0.933 33 H -0.014 1.014 34 H -0.014 1.014 35 H 0.259 0.741 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.408 0.592 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.086 0.914 50 H 0.053 0.947 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.921 11.196 27.799 31.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.064 4.064 3 C -0.177 4.177 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.205 4.205 8 N -0.580 5.580 9 Si 0.786 3.214 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.182 1.182 13 C 0.036 3.964 14 N -0.377 5.377 15 C 0.412 3.588 16 O -0.526 6.526 17 N -0.376 5.376 18 C -0.034 4.034 19 C -0.148 4.148 20 C -0.099 4.099 21 H 0.102 0.898 22 C -0.115 4.115 23 C -0.183 4.183 24 C -0.181 4.181 25 C -0.164 4.164 26 C 0.002 3.998 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.004 0.996 34 H 0.004 0.996 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.246 0.754 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.123 0.877 43 H 0.112 0.888 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.100 0.900 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.105 0.895 50 H 0.072 0.928 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.328 10.354 27.668 30.693 hybrid contribution 0.190 -0.219 -1.402 1.432 sum -8.138 10.135 26.266 29.306 Atomic orbital electron populations 1.21675 0.93504 1.00946 1.01569 1.20709 0.96777 0.96337 0.92549 1.21680 0.99892 0.94562 1.01595 1.18969 0.94286 0.94221 0.92282 1.21580 1.30424 1.12063 0.90952 0.90772 1.25989 0.95728 0.95904 1.02832 1.70132 1.38817 1.24972 1.24073 0.85502 0.79195 0.78044 0.78632 1.20164 1.21663 1.18225 1.21078 0.97400 0.94961 0.82935 1.45014 1.56263 1.33156 1.03308 1.15728 0.80104 0.82191 0.80751 1.90879 1.45328 1.29958 1.86390 1.47628 1.54378 1.30874 1.04714 1.22324 0.94452 0.86423 1.00193 1.22627 1.04285 0.96871 0.91041 1.22296 0.96704 0.96987 0.93865 0.89818 1.22473 1.00071 0.97862 0.91134 1.23029 1.01407 0.96567 0.97270 1.22826 1.01552 0.97253 0.96483 1.22878 0.99070 0.98750 0.95661 1.22183 0.99020 0.99638 0.78920 0.91447 0.92300 0.94493 0.94492 0.92249 0.91452 0.99608 0.99592 0.93205 0.94020 0.94006 0.75415 0.90619 0.90687 0.89341 0.87721 0.88842 0.90273 0.92017 0.89973 0.91270 0.90660 0.89525 0.92823 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 2 C -0.06 -2.45 0.54 -52.18 -0.03 -2.48 16 3 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 4 C 0.04 2.07 4.04 29.85 0.12 2.19 16 5 C -0.51 -27.57 7.65 25.60 0.20 -27.38 16 6 H 0.07 3.71 5.68 -2.91 -0.02 3.69 16 7 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 8 N -0.94 -57.60 13.29 21.45 0.28 -57.31 16 9 Si 0.96 43.72 29.54 68.60 2.03 45.74 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 13 C 0.16 6.15 4.56 86.38 0.39 6.55 16 14 N -0.72 -22.15 4.92 -478.52 -2.35 -24.51 16 15 C 0.71 23.89 8.49 179.06 1.52 25.41 16 16 O -0.64 -28.07 16.60 -4.01 -0.07 -28.13 16 17 N -0.64 -15.37 3.33 -830.19 -2.76 -18.14 16 18 C 0.09 1.29 6.15 86.73 0.53 1.83 16 19 C -0.11 -1.02 5.99 31.78 0.19 -0.83 16 20 C -0.08 -0.98 2.82 -9.48 -0.03 -1.01 16 21 H 0.08 1.09 7.94 -2.39 -0.02 1.07 16 22 C -0.10 -0.96 3.23 -10.27 -0.03 -0.99 16 23 C -0.15 -1.58 7.64 31.12 0.24 -1.34 16 24 C -0.14 -1.23 8.08 31.12 0.25 -0.98 16 25 C -0.13 -0.94 7.19 31.12 0.22 -0.71 16 26 C 0.13 2.58 6.37 86.78 0.55 3.13 16 27 H 0.07 1.76 6.87 -2.39 -0.02 1.74 16 28 H 0.06 2.12 6.62 -2.39 -0.02 2.11 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 2.13 6.62 -2.39 -0.02 2.12 16 32 H 0.07 1.75 6.86 -2.39 -0.02 1.74 16 33 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 34 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 35 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.41 9.90 5.15 -92.71 -0.48 9.42 16 39 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.09 0.69 8.04 -2.39 -0.02 0.67 16 42 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.09 0.95 7.99 -2.39 -0.02 0.93 16 44 H 0.08 0.90 7.95 -2.39 -0.02 0.88 16 45 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 47 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 49 H 0.09 0.58 8.10 -2.39 -0.02 0.56 16 50 H 0.05 1.34 8.04 -2.38 -0.02 1.32 16 51 H 0.06 1.29 7.92 -2.39 -0.02 1.27 16 Total: -1.00 -72.55 391.22 3.29 -69.26 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.41 Total: 16.71 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 5.75 Total: -3.62 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -4.83 Total: -99.96 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.07 Total: -28.13 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -72.55 3.29 -69.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591195396.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.565 kcal (2) G-P(sol) polarization free energy of solvation -72.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds