Wall clock time and date at job start Fri Apr 10 2020 22:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.53002 * 109.46637 * 119.99695 * 2 1 3 5 5 C 1.50706 * 109.46931 * 299.99757 * 4 2 1 6 6 H 1.07999 * 120.00193 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99398 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 C 1.52996 * 109.47302 * 239.99782 * 2 1 3 14 14 N 1.46500 * 109.47368 * 60.00102 * 13 2 1 15 15 C 1.34777 * 119.99746 * 179.97438 * 14 13 2 16 16 O 1.21581 * 120.00299 * 0.02562 * 15 14 13 17 17 N 1.34784 * 119.99541 * 179.97438 * 15 14 13 18 18 C 1.47021 * 125.64785 * 0.03033 * 17 15 14 19 19 C 1.54322 * 107.26952 * 181.02252 * 18 17 15 20 20 C 1.55160 * 102.94207 * 22.18944 * 19 18 17 21 21 H 1.09004 * 111.00520 * 82.61355 * 20 19 18 22 22 C 1.53001 * 111.00213 * 206.42498 * 20 19 18 23 23 C 1.53786 * 113.61556 * 279.13568 * 22 20 19 24 24 C 1.53949 * 87.01752 * 220.04961 * 23 22 20 25 25 C 1.53779 * 113.61097 * 181.52855 * 22 20 19 26 26 C 1.47417 * 125.64612 * 179.71960 * 17 15 14 27 27 H 1.09002 * 109.47508 * 300.00429 * 1 2 3 28 28 H 1.09001 * 109.47109 * 60.00620 * 1 2 3 29 29 H 1.09000 * 109.47437 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46968 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47194 * 299.99323 * 3 2 1 32 32 H 1.09002 * 109.47398 * 59.99503 * 3 2 1 33 33 H 1.09000 * 109.46986 * 180.02562 * 4 2 1 34 34 H 1.08993 * 109.47662 * 60.00092 * 4 2 1 35 35 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.46870 * 180.02562 * 13 2 1 37 37 H 1.09004 * 109.47108 * 300.00057 * 13 2 1 38 38 H 0.97003 * 119.99531 * 0.02562 * 14 13 2 39 39 H 1.09010 * 109.88299 * 300.43475 * 18 17 15 40 40 H 1.08998 * 109.88302 * 61.60364 * 18 17 15 41 41 H 1.09003 * 110.71960 * 140.55410 * 19 18 17 42 42 H 1.09003 * 110.71643 * 263.83113 * 19 18 17 43 43 H 1.08998 * 112.84876 * 50.33379 * 22 20 19 44 44 H 1.09001 * 113.61382 * 334.56937 * 23 22 20 45 45 H 1.09002 * 113.60879 * 105.47271 * 23 22 20 46 46 H 1.08997 * 113.54383 * 270.81027 * 24 23 22 47 47 H 1.09010 * 113.73999 * 139.94383 * 24 23 22 48 48 H 1.08999 * 113.61856 * 254.52710 * 25 22 20 49 49 H 1.09003 * 113.61475 * 25.43720 * 25 22 20 50 50 H 1.09000 * 110.36745 * 274.74785 * 26 17 15 51 51 H 1.09001 * 110.37067 * 37.06790 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5375 -0.0106 2.4797 6 1 0.9163 0.8673 2.3806 7 6 1.8710 -0.4814 3.7320 8 7 1.4321 0.1384 4.8057 9 14 2.9460 -1.9994 3.9036 10 1 2.0883 -3.2108 3.9491 11 1 3.8664 -2.0879 2.7416 12 1 3.7378 -1.9061 5.1564 13 6 2.0400 -0.7213 -1.2492 14 7 1.5518 -0.0307 -2.4454 15 6 1.8779 -0.4910 -3.6694 16 8 2.5769 -1.4796 -3.7809 17 7 1.4282 0.1440 -4.7700 18 6 0.5790 1.3441 -4.7799 19 6 0.2984 1.6946 -6.2564 20 6 0.5369 0.3457 -6.9851 21 1 -0.3458 -0.2913 -6.9268 22 6 0.9494 0.5742 -8.4406 23 6 -0.2352 0.8582 -9.3794 24 6 0.4779 -0.0287 -10.4162 25 6 1.1654 -0.7271 -9.2311 26 6 1.7118 -0.2460 -6.1631 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 3.1299 -0.7208 1.2496 34 1 1.6766 -1.7488 1.2494 35 1 1.6664 -0.1930 5.6868 36 1 3.1300 -0.7216 -1.2489 37 1 1.6767 -1.7490 -1.2491 38 1 0.9944 0.7582 -2.3564 39 1 -0.3586 1.1391 -4.2629 40 1 1.0991 2.1703 -4.2952 41 1 -0.7322 2.0255 -6.3850 42 1 0.9956 2.4534 -6.6118 43 1 1.7674 1.2874 -8.5417 44 1 -1.1802 0.4446 -9.0272 45 1 -0.3145 1.9034 -9.6782 46 1 1.1663 0.5203 -11.0587 47 1 -0.1956 -0.6785 -10.9751 48 1 2.2150 -0.9599 -9.4107 49 1 0.6039 -1.5749 -8.8385 50 1 2.6598 0.1804 -6.4909 51 1 1.7308 -1.3318 -6.2567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591195397.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:46 Heat of formation + Delta-G solvation = -47.865242 kcal Electronic energy + Delta-G solvation = -25981.049700 eV Core-core repulsion = 22493.376233 eV Total energy + Delta-G solvation = -3487.673467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.47802 -40.13164 -38.87514 -37.73028 -35.22592 -34.06026 -32.47430 -30.18138 -29.69467 -28.00089 -27.76915 -26.47783 -25.82702 -24.42328 -23.61945 -21.52746 -20.98984 -20.32422 -19.96475 -18.94993 -18.76386 -17.42337 -17.00784 -16.38737 -16.26368 -16.11752 -15.61088 -15.35638 -15.20828 -14.84264 -14.50934 -14.27336 -14.21927 -14.16428 -13.90136 -13.73143 -13.34830 -13.19461 -12.95083 -12.86439 -12.84855 -12.72634 -12.60829 -12.31184 -12.16493 -11.90195 -11.77543 -11.63494 -11.52878 -11.42761 -11.34591 -11.17329 -10.96458 -10.91228 -10.86744 -10.70413 -10.21644 -9.48230 -8.22384 -6.22212 1.35732 1.38565 1.48775 1.60364 2.10838 2.39068 3.03558 3.12897 3.41214 3.64324 3.75836 3.90524 3.93251 4.01573 4.05090 4.14924 4.22152 4.25179 4.35610 4.43013 4.61257 4.62738 4.66617 4.70341 4.75658 4.84276 4.91900 4.93970 4.95237 4.96581 5.00231 5.03132 5.08280 5.10404 5.15572 5.20722 5.27437 5.29110 5.34727 5.37370 5.39862 5.49050 5.49327 5.55948 5.68384 5.70480 5.75990 6.05434 6.38020 6.84090 6.96953 7.40309 7.53145 8.92978 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.037461 B = 0.002378 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.261257 B =11773.100710 C =12227.808408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.057 4.057 3 C -0.122 4.122 4 C -0.003 4.003 5 C -0.500 4.500 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.949 5.949 9 Si 0.933 3.067 10 H -0.272 1.272 11 H -0.253 1.253 12 H -0.288 1.288 13 C 0.158 3.842 14 N -0.724 5.724 15 C 0.712 3.288 16 O -0.641 6.641 17 N -0.639 5.639 18 C 0.088 3.912 19 C -0.113 4.113 20 C -0.079 4.079 21 H 0.084 0.916 22 C -0.094 4.094 23 C -0.128 4.128 24 C -0.144 4.144 25 C -0.146 4.146 26 C 0.127 3.873 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.014 0.986 34 H 0.013 0.987 35 H 0.262 0.738 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.407 0.593 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.067 0.933 48 H 0.063 0.937 49 H 0.075 0.925 50 H 0.064 0.936 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.485 4.967 -31.286 31.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.057 4.057 3 C -0.179 4.179 4 C -0.041 4.041 5 C -0.539 4.539 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.591 5.591 9 Si 0.759 3.241 10 H -0.197 1.197 11 H -0.177 1.177 12 H -0.214 1.214 13 C 0.033 3.967 14 N -0.380 5.380 15 C 0.414 3.586 16 O -0.523 6.523 17 N -0.377 5.377 18 C -0.034 4.034 19 C -0.151 4.151 20 C -0.099 4.099 21 H 0.102 0.898 22 C -0.113 4.113 23 C -0.166 4.166 24 C -0.181 4.181 25 C -0.183 4.183 26 C 0.005 3.995 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.245 0.755 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.102 0.898 47 H 0.086 0.914 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.082 0.918 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.949 4.218 -31.097 31.629 hybrid contribution 0.419 -0.597 1.100 1.319 sum -3.530 3.622 -29.997 30.421 Atomic orbital electron populations 1.21688 0.93843 1.01229 1.01177 1.20551 0.96542 0.96147 0.92476 1.21686 1.00224 0.94843 1.01183 1.19566 0.95971 0.95507 0.93092 1.21349 1.30215 1.12317 0.89972 0.92798 1.25824 0.97468 0.99876 0.95942 1.70038 1.48081 1.42605 0.98397 0.85908 0.79903 0.80459 0.77880 1.19730 1.17705 1.21409 1.21142 0.97901 0.95171 0.82482 1.45038 1.56173 1.33352 1.03427 1.15690 0.80072 0.82200 0.80672 1.90872 1.45281 1.29798 1.86364 1.47633 1.54157 1.31041 1.04832 1.22308 0.94444 0.86485 1.00127 1.22654 1.04252 0.96926 0.91220 1.22368 0.96641 0.96986 0.93875 0.89799 1.22472 0.99388 0.98236 0.91221 1.22928 0.97193 1.00539 0.95911 1.22863 0.99814 0.99055 0.96368 1.22984 1.00942 0.97137 0.97285 1.22201 0.98863 0.99700 0.78782 0.93319 0.91594 0.93713 0.93746 0.91578 0.93312 0.96722 0.96859 0.92862 0.93120 0.93058 0.75531 0.90761 0.90701 0.87890 0.89347 0.88449 0.89893 0.90566 0.89800 0.91436 0.91845 0.90603 0.91762 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.14 8.05 71.98 0.58 -3.56 16 2 C -0.06 -2.06 0.54 -52.18 -0.03 -2.09 16 3 C -0.12 -4.14 8.05 71.98 0.58 -3.57 16 4 C 0.00 -0.16 3.11 29.85 0.09 -0.06 16 5 C -0.50 -27.30 8.20 25.60 0.21 -27.09 16 6 H 0.05 3.15 5.92 -2.91 -0.02 3.13 16 7 C 0.01 0.30 5.47 84.66 0.46 0.76 16 8 N -0.95 -58.66 13.96 21.45 0.30 -58.36 16 9 Si 0.93 44.90 27.47 68.60 1.88 46.78 16 10 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16 12 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 13 C 0.16 5.40 4.56 86.38 0.39 5.79 16 14 N -0.72 -20.69 4.92 -478.53 -2.35 -23.04 16 15 C 0.71 22.43 8.49 179.05 1.52 23.95 16 16 O -0.64 -26.14 16.60 -3.97 -0.07 -26.20 16 17 N -0.64 -14.58 3.32 -829.33 -2.76 -17.33 16 18 C 0.09 1.26 6.15 86.73 0.53 1.79 16 19 C -0.11 -1.01 6.42 31.78 0.20 -0.81 16 20 C -0.08 -0.93 2.72 -9.32 -0.03 -0.96 16 21 H 0.08 1.05 8.12 -2.38 -0.02 1.03 16 22 C -0.09 -0.88 3.07 -10.27 -0.03 -0.91 16 23 C -0.13 -0.97 7.66 31.18 0.24 -0.73 16 24 C -0.14 -1.24 8.09 31.18 0.25 -0.98 16 25 C -0.15 -1.58 7.45 31.12 0.23 -1.35 16 26 C 0.13 2.47 6.19 86.93 0.54 3.01 16 27 H 0.05 1.89 6.62 -2.39 -0.02 1.87 16 28 H 0.07 1.73 6.86 -2.39 -0.02 1.72 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 32 H 0.05 1.89 6.62 -2.39 -0.02 1.88 16 33 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 34 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 35 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.41 9.43 5.15 -92.71 -0.48 8.95 16 39 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.09 0.66 8.04 -2.39 -0.02 0.64 16 43 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 45 H 0.08 0.46 8.14 -2.39 -0.02 0.45 16 46 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 48 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.08 0.91 8.10 -2.39 -0.02 0.89 16 50 H 0.06 1.23 8.04 -2.39 -0.02 1.21 16 51 H 0.05 1.30 8.03 -2.39 -0.02 1.28 16 Total: -1.00 -71.02 388.45 3.11 -67.91 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.35 Total: 17.06 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 5.75 Total: -6.81 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -4.81 Total: -98.73 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.07 Total: -26.20 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -71.02 3.11 -67.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591195397.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.043 kcal (2) G-P(sol) polarization free energy of solvation -71.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds