Wall clock time and date at job start Fri Apr 10 2020 22:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50696 * 120.00085 * 2 1 4 4 C 1.53004 * 109.47191 * 125.00337 * 3 2 1 5 5 H 1.09006 * 109.49355 * 55.06710 * 4 3 2 6 6 C 1.53042 * 109.49720 * 175.16168 * 4 3 2 7 7 C 1.53040 * 109.53539 * 181.31630 * 6 4 3 8 8 C 1.53189 * 109.31463 * 298.63580 * 7 6 4 9 9 N 1.46930 * 108.77329 * 54.63597 * 8 7 6 10 10 C 1.34770 * 120.62791 * 126.37444 * 9 8 7 11 11 O 1.21592 * 120.00180 * 174.98262 * 10 9 8 12 12 N 1.34777 * 120.00430 * 354.98016 * 10 9 8 13 13 C 1.46498 * 120.00246 * 185.07515 * 12 10 9 14 14 C 1.53001 * 109.47257 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47215 * 300.00447 * 14 13 12 16 16 C 1.53002 * 109.46647 * 60.00197 * 14 13 12 17 17 C 1.53000 * 109.46998 * 179.97438 * 14 13 12 18 18 C 1.50703 * 109.46948 * 180.02562 * 17 14 13 19 19 H 1.08004 * 120.00112 * 359.97438 * 18 17 14 20 20 C 1.37877 * 119.99946 * 180.02562 * 18 17 14 21 21 N 1.31509 * 120.00407 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99616 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47630 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47068 * 120.00222 * 22 20 18 25 25 H 1.48506 * 109.46969 * 239.99859 * 22 20 18 26 26 C 1.46923 * 118.73648 * 306.39026 * 9 8 7 27 27 H 1.07991 * 120.00423 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.99999 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99999 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47091 * 245.00425 * 3 2 1 31 31 H 1.08997 * 109.47611 * 5.00246 * 3 2 1 32 32 H 1.08997 * 109.45923 * 301.33818 * 6 4 3 33 33 H 1.08994 * 109.45920 * 61.29679 * 6 4 3 34 34 H 1.08996 * 109.49780 * 178.68034 * 7 6 4 35 35 H 1.09005 * 109.52452 * 58.60364 * 7 6 4 36 36 H 1.09001 * 109.58656 * 294.84565 * 8 7 6 37 37 H 1.09001 * 109.70157 * 174.48991 * 8 7 6 38 38 H 0.97000 * 119.99831 * 5.06957 * 12 10 9 39 39 H 1.08997 * 109.47426 * 300.00263 * 13 12 10 40 40 H 1.09010 * 109.47220 * 59.99815 * 13 12 10 41 41 H 1.08991 * 109.47376 * 59.99762 * 15 14 13 42 42 H 1.09011 * 109.46659 * 179.97438 * 15 14 13 43 43 H 1.08997 * 109.47253 * 299.99497 * 15 14 13 44 44 H 1.09009 * 109.47115 * 59.99893 * 16 14 13 45 45 H 1.08998 * 109.47277 * 179.97438 * 16 14 13 46 46 H 1.08998 * 109.47514 * 300.00012 * 16 14 13 47 47 H 1.08996 * 109.47173 * 300.00091 * 17 14 13 48 48 H 1.08997 * 109.47139 * 60.00706 * 17 14 13 49 49 H 0.96995 * 120.00411 * 180.02562 * 21 20 18 50 50 H 1.09007 * 109.58978 * 293.82068 * 26 9 8 51 51 H 1.09004 * 109.58409 * 173.40459 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 3.6837 0.4579 1.1399 6 6 3.8854 2.6037 1.1138 7 6 4.8800 2.6165 2.2768 8 6 4.1106 2.6198 3.6015 9 7 3.1837 1.4798 3.6127 10 6 3.1949 0.5958 4.6300 11 8 2.3636 -0.2905 4.6744 12 7 4.1274 0.6941 5.5980 13 6 4.2097 -0.3298 6.6426 14 6 5.3445 0.0170 7.6084 15 6 6.6676 0.0713 6.8422 16 6 5.0702 1.3788 8.2496 17 6 5.4299 -1.0520 8.6997 18 6 6.5473 -0.7101 9.6514 19 1 7.1378 0.1803 9.4934 20 6 6.8165 -1.5347 10.7232 21 7 6.0979 -2.6192 10.9153 22 14 8.2020 -1.1112 11.9024 23 1 8.8534 0.1506 11.4681 24 1 7.6520 -0.9394 13.2710 25 1 9.2025 -2.2087 11.9051 26 6 2.2448 1.3217 2.4938 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 2.6212 1.4026 -0.9314 31 1 1.3587 2.1316 0.0896 32 1 4.4300 2.6261 0.1699 33 1 3.2379 3.4779 1.1800 34 1 5.5010 3.5101 2.2146 35 1 5.5121 1.7300 2.2254 36 1 3.5484 3.5489 3.6952 37 1 4.8099 2.5304 4.4328 38 1 4.7442 1.4427 5.6031 39 1 3.2669 -0.3688 7.1882 40 1 4.4055 -1.3000 6.1858 41 1 6.6065 0.8330 6.0651 42 1 7.4761 0.3188 7.5304 43 1 6.8631 -0.8989 6.3855 44 1 4.1274 1.3401 8.7955 45 1 5.8783 1.6257 8.9380 46 1 5.0089 2.1406 7.4725 47 1 4.4872 -1.0902 9.2455 48 1 5.6251 -2.0224 8.2433 49 1 6.2870 -3.1990 11.6695 50 1 1.5303 2.1450 2.4971 51 1 1.7144 0.3746 2.5929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595627274.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:54 Heat of formation + Delta-G solvation = -35.735279 kcal Electronic energy + Delta-G solvation = -26343.926551 eV Core-core repulsion = 22856.779079 eV Total energy + Delta-G solvation = -3487.147473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.44537 -38.35911 -36.97232 -35.44372 -33.61623 -32.75449 -31.97117 -31.17608 -27.26577 -26.83618 -26.49851 -26.19521 -24.91963 -22.73423 -22.67184 -20.67591 -20.02733 -19.49166 -18.66686 -17.49919 -16.39066 -16.07760 -15.68406 -15.25945 -15.04245 -14.70012 -14.57763 -14.26563 -13.98259 -13.90240 -13.54279 -13.20492 -13.01997 -12.98783 -12.77830 -12.37560 -12.33437 -12.08944 -12.05596 -11.47147 -11.34897 -11.16920 -11.10836 -11.01671 -10.95570 -10.82312 -10.63301 -10.56297 -10.37645 -10.22148 -9.91214 -9.85893 -9.52775 -9.18598 -8.90113 -8.85371 -8.37926 -8.35077 -5.98903 -4.00086 2.07312 2.76775 3.30553 3.38643 3.40889 3.40935 4.04140 4.37475 4.46083 4.49592 4.54599 4.71433 4.85304 4.95516 5.04355 5.17064 5.27364 5.35836 5.36682 5.41746 5.48579 5.54562 5.56227 5.61575 5.66325 5.67583 5.74683 5.77442 5.83660 5.90834 6.11021 6.19030 6.23857 6.30197 6.41794 6.43917 6.49670 6.55161 6.62975 6.64222 6.83688 7.05512 7.08702 7.09084 7.17065 7.66278 7.78622 8.00015 8.15880 8.41914 8.82039 9.04981 9.62955 11.12635 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.027370 B = 0.002640 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.787864 B =10601.616827 C =11200.942568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C -0.086 4.086 4 C -0.100 4.100 5 H 0.076 0.924 6 C -0.113 4.113 7 C -0.135 4.135 8 C 0.111 3.889 9 N -0.634 5.634 10 C 0.703 3.297 11 O -0.592 6.592 12 N -0.738 5.738 13 C 0.146 3.854 14 C -0.072 4.072 15 C -0.125 4.125 16 C -0.126 4.126 17 C 0.036 3.964 18 C -0.510 4.510 19 H 0.060 0.940 20 C 0.055 3.945 21 N -0.894 5.894 22 Si 0.888 3.112 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.137 3.863 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.393 0.607 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.026 0.974 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.026 0.974 47 H 0.019 0.981 48 H 0.019 0.981 49 H 0.259 0.741 50 H 0.059 0.941 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.250 12.648 -22.057 25.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.123 4.123 4 C -0.119 4.119 5 H 0.095 0.905 6 C -0.151 4.151 7 C -0.174 4.174 8 C -0.013 4.013 9 N -0.372 5.372 10 C 0.405 3.595 11 O -0.471 6.471 12 N -0.395 5.395 13 C 0.022 3.978 14 C -0.072 4.072 15 C -0.183 4.183 16 C -0.183 4.183 17 C -0.002 4.002 18 C -0.548 4.548 19 H 0.078 0.922 20 C -0.146 4.146 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.212 1.212 26 C 0.014 3.986 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.230 0.770 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.045 0.955 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.069 0.931 50 H 0.078 0.922 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.866 11.819 -21.864 25.537 hybrid contribution 1.087 0.454 0.760 1.402 sum -4.779 12.273 -21.104 24.877 Atomic orbital electron populations 1.23839 0.95955 1.01816 1.01445 1.22957 0.96101 0.98521 0.99589 1.20757 0.97973 0.95622 0.97976 1.21539 0.97058 0.98960 0.94363 0.90529 1.21561 0.97611 0.97573 0.98308 1.21921 0.98083 1.02830 0.94546 1.21602 0.92246 0.89309 0.98110 1.47252 1.39845 1.27637 1.22469 1.15923 0.82017 0.81756 0.79818 1.90900 1.40689 1.37066 1.78396 1.45550 1.35891 1.29506 1.28567 1.21489 0.99479 0.89576 0.87225 1.20907 0.92566 0.98132 0.95641 1.21745 0.98173 0.99848 0.98496 1.21751 1.02155 0.95120 0.99277 1.19094 0.97435 0.92235 0.91421 1.21219 1.15760 1.08400 1.09407 0.92225 1.25017 0.96453 0.95174 0.97908 1.69972 1.39836 1.13614 1.29948 0.86598 0.82338 0.78276 0.81128 1.19823 1.21144 1.21155 1.21451 0.90509 1.03225 0.83400 0.88549 0.88702 0.87374 0.90706 0.91336 0.91648 0.91735 0.90666 0.91269 0.91491 0.90437 0.76977 0.91981 0.92161 0.95473 0.91468 0.93369 0.93328 0.91458 0.95472 0.96279 0.96308 0.93102 0.92248 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.55 14.32 29.02 0.42 -1.13 16 2 C -0.15 -1.26 8.61 -36.03 -0.31 -1.57 16 3 C -0.09 -0.60 5.14 -27.88 -0.14 -0.74 16 4 C -0.10 -0.83 2.33 -90.50 -0.21 -1.04 16 5 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 6 C -0.11 -0.76 5.17 -26.69 -0.14 -0.90 16 7 C -0.14 -0.99 6.08 -26.61 -0.16 -1.16 16 8 C 0.11 1.00 6.43 -3.71 -0.02 0.98 16 9 N -0.63 -7.83 2.97 -178.50 -0.53 -8.36 16 10 C 0.70 11.57 8.30 -86.92 -0.72 10.85 16 11 O -0.59 -12.16 15.79 5.28 0.08 -12.08 16 12 N -0.74 -11.46 4.87 -65.22 -0.32 -11.78 16 13 C 0.15 2.69 4.57 -4.04 -0.02 2.67 16 14 C -0.07 -1.38 0.54 -154.51 -0.08 -1.47 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 16 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 17 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 18 C -0.51 -13.54 7.65 -34.44 -0.26 -13.81 16 19 H 0.06 1.52 5.68 -52.48 -0.30 1.23 16 20 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 22 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.14 1.50 5.42 -3.72 -0.02 1.48 16 27 H 0.10 0.73 8.06 -52.49 -0.42 0.31 16 28 H 0.09 0.67 7.84 -52.48 -0.41 0.26 16 29 H 0.11 0.91 8.06 -52.48 -0.42 0.49 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.44 7.79 -51.93 -0.40 0.04 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.69 5.56 -51.93 -0.29 0.40 16 38 H 0.39 5.20 3.62 -40.82 -0.15 5.05 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 41 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 42 H 0.07 1.27 6.62 -51.92 -0.34 0.92 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 45 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 46 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 50 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 51 H 0.09 1.27 6.47 -51.93 -0.34 0.93 16 LS Contribution 390.25 15.07 5.88 5.88 Total: -1.00 -31.54 390.25 -9.65 -41.19 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -9.19 Total: 2.20 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -1.29 Total: -7.46 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.11 Total: -45.93 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.08 Total: -12.08 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.54 -9.65 -41.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595627274.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.450 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds