Wall clock time and date at job start Fri Apr 10 2020 22:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50696 * 120.00085 * 2 1 4 4 C 1.53004 * 109.47191 * 125.00337 * 3 2 1 5 5 H 1.09006 * 109.49355 * 55.06710 * 4 3 2 6 6 C 1.53042 * 109.49720 * 175.16168 * 4 3 2 7 7 C 1.53040 * 109.53539 * 181.31630 * 6 4 3 8 8 C 1.53189 * 109.31463 * 298.63580 * 7 6 4 9 9 N 1.46930 * 108.77329 * 54.63597 * 8 7 6 10 10 C 1.34770 * 120.62791 * 126.37444 * 9 8 7 11 11 O 1.21592 * 120.00180 * 174.98262 * 10 9 8 12 12 N 1.34777 * 120.00430 * 354.98016 * 10 9 8 13 13 C 1.46498 * 120.00246 * 185.07515 * 12 10 9 14 14 C 1.53001 * 109.47257 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47215 * 300.00447 * 14 13 12 16 16 C 1.53002 * 109.46647 * 60.00197 * 14 13 12 17 17 C 1.53000 * 109.46998 * 179.97438 * 14 13 12 18 18 C 1.50703 * 109.46948 * 180.02562 * 17 14 13 19 19 H 1.08004 * 120.00112 * 359.97438 * 18 17 14 20 20 C 1.37877 * 119.99946 * 180.02562 * 18 17 14 21 21 N 1.31509 * 120.00407 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99616 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47630 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47068 * 120.00222 * 22 20 18 25 25 H 1.48506 * 109.46969 * 239.99859 * 22 20 18 26 26 C 1.46923 * 118.73648 * 306.39026 * 9 8 7 27 27 H 1.07991 * 120.00423 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.99999 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99999 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47091 * 245.00425 * 3 2 1 31 31 H 1.08997 * 109.47611 * 5.00246 * 3 2 1 32 32 H 1.08997 * 109.45923 * 301.33818 * 6 4 3 33 33 H 1.08994 * 109.45920 * 61.29679 * 6 4 3 34 34 H 1.08996 * 109.49780 * 178.68034 * 7 6 4 35 35 H 1.09005 * 109.52452 * 58.60364 * 7 6 4 36 36 H 1.09001 * 109.58656 * 294.84565 * 8 7 6 37 37 H 1.09001 * 109.70157 * 174.48991 * 8 7 6 38 38 H 0.97000 * 119.99831 * 5.06957 * 12 10 9 39 39 H 1.08997 * 109.47426 * 300.00263 * 13 12 10 40 40 H 1.09010 * 109.47220 * 59.99815 * 13 12 10 41 41 H 1.08991 * 109.47376 * 59.99762 * 15 14 13 42 42 H 1.09011 * 109.46659 * 179.97438 * 15 14 13 43 43 H 1.08997 * 109.47253 * 299.99497 * 15 14 13 44 44 H 1.09009 * 109.47115 * 59.99893 * 16 14 13 45 45 H 1.08998 * 109.47277 * 179.97438 * 16 14 13 46 46 H 1.08998 * 109.47514 * 300.00012 * 16 14 13 47 47 H 1.08996 * 109.47173 * 300.00091 * 17 14 13 48 48 H 1.08997 * 109.47139 * 60.00706 * 17 14 13 49 49 H 0.96995 * 120.00411 * 180.02562 * 21 20 18 50 50 H 1.09007 * 109.58978 * 293.82068 * 26 9 8 51 51 H 1.09004 * 109.58409 * 173.40459 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 3.6837 0.4579 1.1399 6 6 3.8854 2.6037 1.1138 7 6 4.8800 2.6165 2.2768 8 6 4.1106 2.6198 3.6015 9 7 3.1837 1.4798 3.6127 10 6 3.1949 0.5958 4.6300 11 8 2.3636 -0.2905 4.6744 12 7 4.1274 0.6941 5.5980 13 6 4.2097 -0.3298 6.6426 14 6 5.3445 0.0170 7.6084 15 6 6.6676 0.0713 6.8422 16 6 5.0702 1.3788 8.2496 17 6 5.4299 -1.0520 8.6997 18 6 6.5473 -0.7101 9.6514 19 1 7.1378 0.1803 9.4934 20 6 6.8165 -1.5347 10.7232 21 7 6.0979 -2.6192 10.9153 22 14 8.2020 -1.1112 11.9024 23 1 8.8534 0.1506 11.4681 24 1 7.6520 -0.9394 13.2710 25 1 9.2025 -2.2087 11.9051 26 6 2.2448 1.3217 2.4938 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 2.6212 1.4026 -0.9314 31 1 1.3587 2.1316 0.0896 32 1 4.4300 2.6261 0.1699 33 1 3.2379 3.4779 1.1800 34 1 5.5010 3.5101 2.2146 35 1 5.5121 1.7300 2.2254 36 1 3.5484 3.5489 3.6952 37 1 4.8099 2.5304 4.4328 38 1 4.7442 1.4427 5.6031 39 1 3.2669 -0.3688 7.1882 40 1 4.4055 -1.3000 6.1858 41 1 6.6065 0.8330 6.0651 42 1 7.4761 0.3188 7.5304 43 1 6.8631 -0.8989 6.3855 44 1 4.1274 1.3401 8.7955 45 1 5.8783 1.6257 8.9380 46 1 5.0089 2.1406 7.4725 47 1 4.4872 -1.0902 9.2455 48 1 5.6251 -2.0224 8.2433 49 1 6.2870 -3.1990 11.6695 50 1 1.5303 2.1450 2.4971 51 1 1.7144 0.3746 2.5929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595627274.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:53 Heat of formation + Delta-G solvation = -53.031344 kcal Electronic energy + Delta-G solvation = -26344.676565 eV Core-core repulsion = 22856.779079 eV Total energy + Delta-G solvation = -3487.897486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.57251 -39.44808 -38.40934 -36.25010 -35.22327 -34.06066 -33.34792 -31.92299 -29.14023 -28.04191 -27.96662 -27.07232 -26.11086 -24.57979 -23.35874 -21.62299 -20.75065 -20.54352 -19.90998 -18.84216 -18.35219 -17.34484 -16.73118 -16.50957 -16.17345 -15.72531 -15.60921 -15.40917 -15.36328 -14.99255 -14.52486 -14.41861 -14.32010 -14.18613 -13.93899 -13.73418 -13.62966 -13.13031 -12.94858 -12.89000 -12.68819 -12.59484 -12.34996 -12.23316 -12.14624 -11.96478 -11.93360 -11.81952 -11.60383 -11.54200 -11.26403 -11.20248 -10.97520 -10.83751 -10.51669 -10.22360 -10.13461 -9.43875 -8.13192 -6.21094 1.42582 1.43340 1.43666 1.55256 1.64616 2.12617 2.44863 2.96380 3.21405 3.73290 3.84421 3.89135 3.97834 4.08357 4.10212 4.20452 4.21889 4.29603 4.41045 4.45870 4.61665 4.69182 4.72190 4.73409 4.79642 4.82359 4.87300 4.90973 4.95727 5.00092 5.07832 5.10139 5.12068 5.14975 5.23899 5.29078 5.39336 5.48679 5.50027 5.50503 5.53743 5.58346 5.61526 5.79471 5.80602 5.90360 5.91147 5.95570 6.31252 6.93573 6.98590 7.46662 7.55646 8.99742 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.027370 B = 0.002640 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.787864 B =10601.616827 C =11200.942568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C -0.079 4.079 4 C -0.091 4.091 5 H 0.057 0.943 6 C -0.109 4.109 7 C -0.131 4.131 8 C 0.102 3.898 9 N -0.626 5.626 10 C 0.697 3.303 11 O -0.642 6.642 12 N -0.725 5.725 13 C 0.161 3.839 14 C -0.063 4.063 15 C -0.119 4.119 16 C -0.120 4.120 17 C 0.039 3.961 18 C -0.510 4.510 19 H 0.074 0.926 20 C -0.007 4.007 21 N -0.940 5.940 22 Si 0.960 3.040 23 H -0.255 1.255 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.134 3.866 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.407 0.593 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.036 0.964 44 H 0.035 0.965 45 H 0.058 0.942 46 H 0.067 0.933 47 H -0.015 1.015 48 H -0.014 1.014 49 H 0.259 0.741 50 H 0.075 0.925 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.695 16.374 -23.685 29.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.184 4.184 3 C -0.116 4.116 4 C -0.111 4.111 5 H 0.076 0.924 6 C -0.146 4.146 7 C -0.170 4.170 8 C -0.020 4.020 9 N -0.363 5.363 10 C 0.398 3.602 11 O -0.524 6.524 12 N -0.384 5.384 13 C 0.036 3.964 14 C -0.063 4.063 15 C -0.176 4.176 16 C -0.177 4.177 17 C 0.002 3.998 18 C -0.549 4.549 19 H 0.093 0.907 20 C -0.204 4.204 21 N -0.581 5.581 22 Si 0.785 3.215 23 H -0.179 1.179 24 H -0.211 1.211 25 H -0.211 1.211 26 C 0.011 3.989 27 H 0.112 0.888 28 H 0.125 0.875 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.248 0.752 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.004 0.996 48 H 0.004 0.996 49 H 0.068 0.932 50 H 0.094 0.906 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.280 15.617 -23.536 28.569 hybrid contribution 0.525 -0.725 1.204 1.501 sum -3.755 14.892 -22.332 27.103 Atomic orbital electron populations 1.23975 0.96058 1.02347 1.01236 1.23091 0.96396 0.99046 0.99843 1.20740 0.97874 0.95058 0.97959 1.21452 0.96957 0.99454 0.93229 0.92450 1.21567 0.97476 0.96734 0.98865 1.21918 0.98026 1.03460 0.93558 1.21948 0.92092 0.88479 0.99462 1.47342 1.40237 1.27465 1.21265 1.16137 0.81522 0.81957 0.80579 1.90869 1.42580 1.39369 1.79581 1.45199 1.36215 1.29185 1.27755 1.21059 0.98107 0.89724 0.87530 1.20702 0.94010 0.97250 0.94373 1.21670 0.96316 1.00634 0.99019 1.21680 1.01124 0.94812 1.00104 1.18977 0.95448 0.92748 0.92661 1.21612 1.15655 1.08408 1.09179 0.90750 1.25971 0.99174 0.95100 1.00113 1.70132 1.42029 1.15071 1.30874 0.85472 0.78972 0.78588 0.78458 1.17862 1.21120 1.21115 1.21572 0.90920 1.02159 0.84221 0.88827 0.87500 0.88455 0.89148 0.90098 0.90083 0.90252 0.88035 0.92627 0.89340 0.90060 0.75238 0.94130 0.94146 0.91440 0.92293 0.94515 0.94534 0.92268 0.91447 0.99632 0.99611 0.93199 0.90645 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.11 14.32 67.78 0.97 -2.14 16 2 C -0.17 -2.67 8.61 25.65 0.22 -2.45 16 3 C -0.08 -0.94 5.14 29.85 0.15 -0.79 16 4 C -0.09 -1.35 2.33 -10.72 -0.02 -1.38 16 5 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 6 C -0.11 -1.06 5.17 30.62 0.16 -0.90 16 7 C -0.13 -1.42 6.08 30.67 0.19 -1.24 16 8 C 0.10 1.48 6.43 86.36 0.56 2.04 16 9 N -0.63 -14.56 2.97 -836.91 -2.49 -17.05 16 10 C 0.70 22.87 8.30 179.06 1.49 24.35 16 11 O -0.64 -27.45 15.79 -4.00 -0.06 -27.51 16 12 N -0.72 -21.88 4.87 -478.53 -2.33 -24.21 16 13 C 0.16 6.10 4.57 86.38 0.39 6.49 16 14 C -0.06 -2.42 0.54 -52.18 -0.03 -2.45 16 15 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 16 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 17 C 0.04 2.03 4.04 29.85 0.12 2.15 16 18 C -0.51 -27.40 7.65 25.60 0.20 -27.20 16 19 H 0.07 3.71 5.68 -2.91 -0.02 3.70 16 20 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 21 N -0.94 -57.62 13.29 21.45 0.28 -57.34 16 22 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 23 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 24 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 26 C 0.13 2.80 5.42 86.36 0.47 3.27 16 27 H 0.09 1.46 8.06 -2.92 -0.02 1.44 16 28 H 0.11 1.38 7.84 -2.91 -0.02 1.35 16 29 H 0.10 1.73 8.06 -2.91 -0.02 1.71 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.80 7.79 -2.39 -0.02 0.78 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.11 5.56 -2.39 -0.01 1.10 16 38 H 0.41 9.62 3.62 -92.71 -0.34 9.28 16 39 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 40 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.07 1.72 6.86 -2.39 -0.02 1.70 16 42 H 0.06 2.10 6.62 -2.38 -0.02 2.08 16 43 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 45 H 0.06 2.12 6.62 -2.39 -0.02 2.10 16 46 H 0.07 1.73 6.86 -2.39 -0.02 1.72 16 47 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 48 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 49 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 50 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 51 H 0.06 1.72 6.47 -2.38 -0.02 1.71 16 Total: -1.00 -72.53 390.25 4.45 -68.08 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.54 Total: 19.48 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 6.48 Total: -7.11 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -4.53 Total: -98.60 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.06 Total: -27.51 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -72.53 4.45 -68.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595627274.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.051 kcal (2) G-P(sol) polarization free energy of solvation -72.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds