Wall clock time and date at job start Fri Apr 10 2020 22:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47381 * 2 1 4 4 C 1.52997 * 109.47550 * 239.99910 * 2 1 3 5 5 N 1.46504 * 109.47240 * 59.99813 * 4 2 1 6 6 C 1.34778 * 120.00128 * 180.02562 * 5 4 2 7 7 O 1.21590 * 119.99784 * 354.82482 * 6 5 4 8 8 N 1.34771 * 119.99847 * 174.82354 * 6 5 4 9 9 C 1.46927 * 120.63000 * 4.77575 * 8 6 5 10 10 C 1.52766 * 109.00621 * 233.58123 * 9 8 6 11 11 C 1.53034 * 109.38651 * 305.59089 * 10 9 8 12 12 C 1.53040 * 109.53792 * 61.23765 * 11 10 9 13 13 H 1.08994 * 109.49768 * 58.59045 * 12 11 10 14 14 C 1.50708 * 109.49718 * 178.68458 * 12 11 10 15 15 H 1.07996 * 120.00027 * 359.83822 * 14 12 11 16 16 C 1.37874 * 119.99921 * 179.83963 * 14 12 11 17 17 N 1.31516 * 120.00043 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00090 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47454 * 59.99799 * 18 16 14 20 20 H 1.48499 * 109.47561 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46967 * 299.99915 * 18 16 14 22 22 C 1.46927 * 120.63049 * 185.05663 * 8 6 5 23 23 C 1.53001 * 109.47415 * 119.99655 * 2 1 3 24 24 C 1.53790 * 113.61182 * 55.01433 * 23 2 1 25 25 C 1.53781 * 87.08321 * 220.02192 * 24 23 2 26 26 C 1.53783 * 87.16981 * 25.39148 * 25 24 23 27 27 H 1.08998 * 109.47205 * 305.23593 * 1 2 3 28 28 H 1.09004 * 109.46877 * 65.23453 * 1 2 3 29 29 H 1.09001 * 109.47229 * 185.23211 * 1 2 3 30 30 H 1.08997 * 109.47725 * 185.01655 * 3 2 1 31 31 H 1.09002 * 109.46722 * 305.01801 * 3 2 1 32 32 H 1.08999 * 109.47249 * 65.01279 * 3 2 1 33 33 H 1.08994 * 109.47679 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.46847 * 300.00196 * 4 2 1 35 35 H 0.96996 * 119.99538 * 359.97438 * 5 4 2 36 36 H 1.08998 * 109.58644 * 353.41960 * 9 8 6 37 37 H 1.09005 * 109.58658 * 113.84700 * 9 8 6 38 38 H 1.08999 * 109.56382 * 185.54963 * 10 9 8 39 39 H 1.09001 * 109.38595 * 65.52102 * 10 9 8 40 40 H 1.09002 * 109.46198 * 301.22215 * 11 10 9 41 41 H 1.08995 * 109.45280 * 181.25217 * 11 10 9 42 42 H 0.97001 * 120.00135 * 179.97438 * 17 16 14 43 43 H 1.09005 * 109.58559 * 246.15566 * 22 8 6 44 44 H 1.08995 * 109.58399 * 6.57971 * 22 8 6 45 45 H 1.08995 * 112.91538 * 186.26788 * 23 2 1 46 46 H 1.09000 * 113.60747 * 105.47073 * 24 23 2 47 47 H 1.09003 * 113.69143 * 334.58537 * 24 23 2 48 48 H 1.08999 * 113.61349 * 139.97976 * 25 24 23 49 49 H 1.09003 * 113.61392 * 270.80298 * 25 24 23 50 50 H 1.09003 * 113.61465 * 89.15908 * 26 25 24 51 51 H 1.09001 * 113.61189 * 220.05737 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.5517 -0.0307 -2.4454 6 6 1.8770 -0.4915 -3.6695 7 8 2.6511 -1.4223 -3.7828 8 7 1.3443 0.0795 -4.7679 9 6 0.4904 1.2697 -4.6536 10 6 -0.8339 1.0023 -5.3666 11 6 -0.5562 0.5635 -6.8061 12 6 0.2601 -0.7310 -6.7981 13 1 -0.2894 -1.5043 -6.2613 14 6 0.5054 -1.1797 -8.2158 15 1 0.1158 -0.6013 -9.0404 16 6 1.2273 -2.3288 -8.4600 17 7 1.7013 -3.0335 -7.4559 18 14 1.5320 -2.8846 -10.2172 19 1 2.2792 -1.8294 -10.9476 20 1 2.3268 -4.1390 -10.2089 21 1 0.2317 -3.1275 -10.8920 22 6 1.6013 -0.4800 -6.1019 23 6 2.0400 -0.7212 1.2493 24 6 1.4837 -2.1460 1.4083 25 6 1.3630 -1.8466 2.9119 26 6 1.2665 -0.3600 2.5304 27 1 -0.3633 0.5929 0.8394 28 1 -0.3633 0.4305 -0.9332 29 1 -0.3634 -1.0234 0.0937 30 1 3.1263 1.4438 -0.0899 31 1 1.6051 1.9816 -0.8417 32 1 1.7519 1.9298 0.9315 33 1 3.1300 -0.7216 -1.2490 34 1 1.6767 -1.7489 -1.2491 35 1 0.9937 0.7577 -2.3564 36 1 0.3008 1.4837 -3.6018 37 1 0.9868 2.1216 -5.1183 38 1 -1.4352 1.9115 -5.3729 39 1 -1.3737 0.2130 -4.8433 40 1 0.0046 1.3431 -7.3217 41 1 -1.5010 0.3938 -7.3226 42 1 2.2088 -3.8421 -7.6277 43 1 2.1902 0.2263 -6.6872 44 1 2.1445 -1.4200 -6.0054 45 1 3.1224 -0.6599 1.3625 46 1 2.2083 -2.9262 1.1752 47 1 0.5237 -2.2990 0.9151 48 1 0.4531 -2.2413 3.3640 49 1 2.2598 -2.0944 3.4798 50 1 0.2469 -0.0223 2.3443 51 1 1.8160 0.2996 3.2020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595645030.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:01 Heat of formation + Delta-G solvation = -40.324630 kcal Electronic energy + Delta-G solvation = -27004.304479 eV Core-core repulsion = 23516.957997 eV Total energy + Delta-G solvation = -3487.346482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.52558 -40.57644 -38.50810 -36.74268 -35.32287 -33.86900 -33.05621 -31.48340 -28.24475 -28.11524 -26.99191 -26.44788 -26.10963 -25.08562 -23.43297 -21.75606 -21.10020 -20.43807 -19.34031 -18.88996 -18.19660 -17.24960 -16.63191 -16.53690 -16.42905 -15.96638 -15.63227 -15.25468 -15.18136 -14.98392 -14.66144 -14.37840 -14.22867 -14.00036 -13.68363 -13.56169 -13.54176 -13.21211 -12.84715 -12.72437 -12.65342 -12.45630 -12.33469 -12.27697 -12.24090 -11.90389 -11.85564 -11.76381 -11.62413 -11.26497 -11.14658 -10.98202 -10.92494 -10.85195 -10.75744 -10.50462 -10.11695 -9.23730 -8.09191 -6.26823 1.40953 1.42813 1.51177 1.81367 2.28304 2.42616 3.06174 3.20713 3.55419 3.72229 3.78027 3.99299 4.03948 4.08704 4.17012 4.20347 4.26042 4.30911 4.46512 4.60396 4.68057 4.71591 4.74333 4.81696 4.83817 4.86794 4.88835 4.91962 4.95992 5.07046 5.09375 5.11256 5.13455 5.18103 5.24145 5.27475 5.29187 5.33451 5.38376 5.43735 5.49672 5.56551 5.60251 5.66270 5.74364 5.90142 5.98850 6.18970 6.37012 6.86334 7.16078 7.43185 7.70991 8.93753 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.022464 B = 0.003181 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.156966 B = 8800.448540 C = 9489.690432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.054 4.054 3 C -0.138 4.138 4 C 0.152 3.848 5 N -0.729 5.729 6 C 0.691 3.309 7 O -0.644 6.644 8 N -0.628 5.628 9 C 0.110 3.890 10 C -0.125 4.125 11 C -0.105 4.105 12 C 0.039 3.961 13 H -0.015 1.015 14 C -0.537 4.537 15 H 0.063 0.937 16 C 0.008 3.992 17 N -0.915 5.915 18 Si 0.958 3.042 19 H -0.267 1.267 20 H -0.290 1.290 21 H -0.267 1.267 22 C 0.144 3.856 23 C -0.098 4.098 24 C -0.152 4.152 25 C -0.139 4.139 26 C -0.127 4.127 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.040 0.960 35 H 0.406 0.594 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.259 0.741 43 H 0.032 0.968 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.052 0.948 47 H 0.080 0.920 48 H 0.070 0.930 49 H 0.081 0.919 50 H 0.095 0.905 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.237 12.168 20.667 24.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.054 4.054 3 C -0.195 4.195 4 C 0.027 3.973 5 N -0.389 5.389 6 C 0.393 3.607 7 O -0.526 6.526 8 N -0.364 5.364 9 C -0.012 4.012 10 C -0.163 4.163 11 C -0.142 4.142 12 C 0.020 3.980 13 H 0.003 0.997 14 C -0.575 4.575 15 H 0.081 0.919 16 C -0.191 4.191 17 N -0.554 5.554 18 Si 0.784 3.216 19 H -0.192 1.192 20 H -0.216 1.216 21 H -0.192 1.192 22 C 0.021 3.979 23 C -0.117 4.117 24 C -0.189 4.189 25 C -0.176 4.176 26 C -0.164 4.164 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.246 0.754 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.071 0.929 47 H 0.099 0.901 48 H 0.089 0.911 49 H 0.099 0.901 50 H 0.113 0.887 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.594 11.351 20.634 23.822 hybrid contribution 0.374 -0.864 -1.283 1.591 sum -3.220 10.487 19.351 22.244 Atomic orbital electron populations 1.22047 0.93384 1.02416 1.02487 1.20629 0.96607 0.96060 0.92147 1.21828 1.00851 0.94039 1.02770 1.21181 0.97819 0.95188 0.83066 1.45129 1.56951 1.33712 1.03119 1.16251 0.80832 0.81945 0.81699 1.90871 1.41421 1.33854 1.86404 1.47669 1.51685 1.31160 1.05848 1.21767 0.91039 0.86806 1.01581 1.21833 0.96685 1.02237 0.95569 1.21502 0.99264 0.97102 0.96373 1.18905 0.91890 0.93056 0.94148 0.99734 1.21504 1.34339 1.08703 0.92983 0.91868 1.25925 0.95457 0.96729 1.01008 1.70103 1.36484 1.16372 1.32419 0.85607 0.78393 0.77483 0.80166 1.19162 1.21574 1.19229 1.21562 0.99645 0.97652 0.79054 1.22560 0.99903 0.95428 0.93799 1.23092 1.01320 0.96824 0.97702 1.22785 1.02310 0.97085 0.95433 1.23046 1.01302 0.96390 0.95651 0.89794 0.92854 0.92764 0.93163 0.92453 0.90349 0.93697 0.94114 0.75392 0.88482 0.90279 0.87577 0.93202 0.92400 0.92921 0.93233 0.94979 0.90875 0.89389 0.92871 0.90119 0.91079 0.90061 0.88679 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 7.45 71.98 0.54 -1.74 16 2 C -0.05 -0.95 0.43 -52.18 -0.02 -0.97 16 3 C -0.14 -2.02 8.20 71.98 0.59 -1.43 16 4 C 0.15 4.21 4.42 86.38 0.38 4.59 16 5 N -0.73 -22.15 4.86 -478.54 -2.32 -24.48 16 6 C 0.69 29.97 8.30 179.06 1.49 31.45 16 7 O -0.64 -35.45 15.79 -4.00 -0.06 -35.52 16 8 N -0.63 -26.16 2.98 -837.74 -2.49 -28.65 16 9 C 0.11 3.16 6.40 86.22 0.55 3.71 16 10 C -0.13 -3.66 6.06 30.53 0.19 -3.47 16 11 C -0.10 -4.06 5.11 30.62 0.16 -3.91 16 12 C 0.04 2.03 2.25 -11.46 -0.03 2.00 16 13 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 14 C -0.54 -30.10 8.56 25.60 0.22 -29.88 16 15 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 16 C 0.01 0.47 5.30 84.65 0.45 0.92 16 17 N -0.92 -57.20 11.39 21.45 0.24 -56.96 16 18 Si 0.96 45.10 29.54 68.60 2.03 47.12 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 C 0.14 7.46 5.39 86.36 0.47 7.93 16 23 C -0.10 -1.57 3.03 -10.20 -0.03 -1.60 16 24 C -0.15 -2.70 6.72 31.12 0.21 -2.49 16 25 C -0.14 -1.87 8.08 31.12 0.25 -1.62 16 26 C -0.13 -1.51 7.17 31.18 0.22 -1.29 16 27 H 0.08 0.93 6.37 -2.39 -0.02 0.92 16 28 H 0.05 0.85 6.73 -2.39 -0.02 0.84 16 29 H 0.05 0.95 6.04 -2.39 -0.01 0.93 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.81 7.01 -2.39 -0.02 0.79 16 32 H 0.08 0.86 7.95 -2.39 -0.02 0.84 16 33 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.04 1.31 7.61 -2.39 -0.02 1.29 16 35 H 0.41 9.37 3.65 -92.71 -0.34 9.03 16 36 H 0.10 2.02 5.57 -2.39 -0.01 2.01 16 37 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 43 H 0.03 1.65 8.14 -2.38 -0.02 1.63 16 44 H 0.07 4.57 5.15 -2.39 -0.01 4.56 16 45 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.08 1.52 6.04 -2.39 -0.01 1.50 16 48 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.09 1.00 5.71 -2.39 -0.01 0.99 16 51 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -75.70 376.60 3.58 -72.13 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.56 Total: 24.15 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 5.63 Total: 2.21 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -4.57 Total: -110.09 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -0.06 Total: -35.52 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -75.70 3.58 -72.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595645030.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.802 kcal (2) G-P(sol) polarization free energy of solvation -75.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds