Wall clock time and date at job start Fri Apr 10 2020 22:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46931 * 2 1 4 4 H 1.08997 * 109.47379 * 305.00013 * 3 2 1 5 5 C 1.52999 * 109.46951 * 65.00249 * 3 2 1 6 6 C 1.50697 * 109.46944 * 184.99782 * 3 2 1 7 7 O 1.21285 * 119.99975 * 346.27393 * 6 3 2 8 8 N 1.34772 * 120.00275 * 166.27064 * 6 3 2 9 9 C 1.46927 * 120.64833 * 184.92334 * 8 6 3 10 10 C 1.53622 * 108.54208 * 126.32524 * 9 8 6 11 11 C 1.53049 * 109.25933 * 54.86691 * 10 9 8 12 12 C 1.53035 * 109.43517 * 58.57771 * 11 10 9 13 13 C 1.53190 * 109.33440 * 181.23320 * 12 11 10 14 14 N 1.46939 * 108.77892 * 305.37297 * 13 12 11 15 15 C 1.36932 * 120.63795 * 233.61760 * 14 13 12 16 16 H 1.07999 * 120.00692 * 28.30938 * 15 14 13 17 17 C 1.38819 * 119.99661 * 208.30363 * 15 14 13 18 18 N 1.31623 * 119.99746 * 15.91668 * 17 15 14 19 19 Si 1.86797 * 120.00025 * 195.91413 * 17 15 14 20 20 H 1.48502 * 109.47269 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47047 * 120.00193 * 19 17 15 22 22 H 1.48497 * 109.47426 * 240.00133 * 19 17 15 23 23 C 1.46920 * 118.71446 * 53.63724 * 14 13 12 24 24 C 1.53047 * 109.39158 * 178.59859 * 11 10 9 25 25 C 1.53030 * 109.55040 * 298.56571 * 11 10 9 26 26 C 1.46930 * 120.64319 * 5.20721 * 8 6 3 27 27 H 1.08995 * 109.47322 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46927 * 300.00018 * 1 2 3 29 29 H 1.09007 * 109.46878 * 59.99732 * 1 2 3 30 30 H 1.09003 * 109.46927 * 239.99982 * 2 1 3 31 31 H 1.08994 * 109.46858 * 120.00147 * 2 1 3 32 32 H 1.09002 * 109.47223 * 60.79832 * 5 3 2 33 33 H 1.09007 * 109.46776 * 180.79404 * 5 3 2 34 34 H 1.08994 * 109.47279 * 300.79402 * 5 3 2 35 35 H 1.08997 * 109.59307 * 246.15869 * 9 8 6 36 36 H 1.09008 * 109.58505 * 6.58568 * 9 8 6 37 37 H 1.08998 * 109.63392 * 294.87331 * 10 9 8 38 38 H 1.08994 * 109.42775 * 174.74043 * 10 9 8 39 39 H 1.09003 * 109.48977 * 301.18569 * 12 11 10 40 40 H 1.08997 * 109.49479 * 61.27033 * 12 11 10 41 41 H 1.08999 * 109.58531 * 185.58609 * 13 12 11 42 42 H 1.08997 * 109.70571 * 65.22718 * 13 12 11 43 43 H 0.96998 * 119.99566 * 179.97438 * 18 17 15 44 44 H 1.09003 * 109.58459 * 186.57436 * 23 14 13 45 45 H 1.09000 * 109.70550 * 66.21693 * 23 14 13 46 46 H 1.08994 * 109.49373 * 298.69245 * 24 11 10 47 47 H 1.08993 * 109.49061 * 58.77923 * 24 11 10 48 48 H 1.09002 * 109.49323 * 301.33975 * 25 11 10 49 49 H 1.08994 * 109.49604 * 181.25469 * 25 11 10 50 50 H 1.09008 * 109.58406 * 353.39966 * 26 8 6 51 51 H 1.08996 * 109.59165 * 113.68438 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5419 1.4443 -0.1238 7 8 4.1655 0.4179 0.0451 8 7 4.1921 2.5865 -0.4222 9 6 5.6433 2.5840 -0.6522 10 6 5.9233 3.2387 -2.0134 11 6 5.2849 4.6293 -2.0456 12 6 5.8562 5.4784 -0.9077 13 6 5.1933 6.8593 -0.9232 14 7 5.3602 7.4492 -2.2585 15 6 5.9098 8.6945 -2.4076 16 1 6.6171 9.0634 -1.6796 17 6 5.5578 9.4829 -3.4946 18 7 4.4878 9.1883 -4.2022 19 14 6.6028 10.9618 -3.9531 20 1 7.7421 11.0753 -3.0074 21 1 7.1215 10.7924 -5.3343 22 1 5.7759 12.1932 -3.8825 23 6 4.9257 6.6772 -3.4306 24 6 5.5917 5.2984 -3.3875 25 6 3.7696 4.5013 -1.8748 26 6 3.4646 3.8594 -0.5177 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.0816 1.5958 2.1484 33 1 1.9864 3.1584 1.3014 34 1 0.5497 2.1126 1.4038 35 1 6.1394 3.1490 0.1370 36 1 6.0109 1.5578 -0.6562 37 1 5.4996 2.6256 -2.8088 38 1 6.9998 3.3292 -2.1576 39 1 5.6568 4.9898 0.0461 40 1 6.9322 5.5898 -1.0419 41 1 5.6664 7.5000 -0.1790 42 1 4.1316 6.7599 -0.6978 43 1 4.2417 9.7394 -4.9615 44 1 5.2220 7.1977 -4.3413 45 1 3.8421 6.5604 -3.4126 46 1 6.6699 5.4115 -3.4994 47 1 5.2041 4.6817 -4.1983 48 1 3.3652 3.8769 -2.6716 49 1 3.3135 5.4902 -1.9202 50 1 2.3935 3.6753 -0.4331 51 1 3.7853 4.5248 0.2838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957505024.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:35 Heat of formation + Delta-G solvation = -49.292512 kcal Electronic energy + Delta-G solvation = -27598.879311 eV Core-core repulsion = 24111.143953 eV Total energy + Delta-G solvation = -3487.735358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.80801 -40.19366 -37.39184 -36.44451 -35.08916 -33.13609 -32.13423 -31.59690 -30.50835 -29.36781 -26.95943 -26.05116 -24.78102 -24.37040 -23.52310 -22.70470 -21.44977 -20.15477 -19.20168 -18.55696 -17.79659 -17.06209 -16.80299 -16.49294 -15.87864 -15.55828 -15.52681 -15.33701 -15.12169 -14.91375 -14.82396 -14.60988 -14.25358 -14.05125 -13.53272 -13.31126 -13.11431 -13.03484 -12.91049 -12.89527 -12.70161 -12.59543 -12.55314 -12.46224 -12.21520 -12.09934 -12.06257 -11.74159 -11.68925 -11.65282 -11.55279 -11.14243 -11.06150 -10.89359 -10.59627 -10.46385 -9.56791 -8.58656 -7.83845 -5.28478 1.45357 1.48171 1.57524 1.63194 2.04197 2.52561 3.30179 3.48457 3.73635 3.79898 3.82043 3.84246 3.92779 4.01809 4.16003 4.21747 4.36713 4.40586 4.46397 4.53516 4.58639 4.61955 4.63871 4.71562 4.76306 4.77629 4.79710 4.86676 4.87970 4.96701 5.02030 5.04268 5.08848 5.10400 5.13791 5.18959 5.21897 5.30913 5.38898 5.41375 5.44122 5.50097 5.52086 5.61872 5.62909 5.71046 5.87707 6.43546 6.45104 7.18016 7.19825 7.92886 8.43034 9.21337 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.027554 B = 0.003276 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.929010 B = 8544.862026 C = 8891.570153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C -0.109 4.109 4 H 0.109 0.891 5 C -0.146 4.146 6 C 0.513 3.487 7 O -0.588 6.588 8 N -0.604 5.604 9 C 0.114 3.886 10 C -0.112 4.112 11 C -0.041 4.041 12 C -0.112 4.112 13 C 0.142 3.858 14 N -0.609 5.609 15 C -0.257 4.257 16 H 0.062 0.938 17 C -0.050 4.050 18 N -0.932 5.932 19 Si 0.961 3.039 20 H -0.269 1.269 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.181 3.819 24 C -0.119 4.119 25 C -0.121 4.121 26 C 0.108 3.892 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.044 0.956 42 H 0.026 0.974 43 H 0.248 0.752 44 H 0.044 0.956 45 H 0.006 0.994 46 H 0.044 0.956 47 H 0.058 0.942 48 H 0.062 0.938 49 H 0.069 0.931 50 H 0.108 0.892 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.152 -15.397 8.944 18.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.140 4.140 3 C -0.130 4.130 4 H 0.127 0.873 5 C -0.203 4.203 6 C 0.304 3.696 7 O -0.469 6.469 8 N -0.336 5.336 9 C -0.009 4.009 10 C -0.150 4.150 11 C -0.041 4.041 12 C -0.151 4.151 13 C 0.017 3.983 14 N -0.333 5.333 15 C -0.388 4.388 16 H 0.080 0.920 17 C -0.245 4.245 18 N -0.579 5.579 19 Si 0.790 3.210 20 H -0.193 1.193 21 H -0.219 1.219 22 H -0.219 1.219 23 C 0.055 3.945 24 C -0.158 4.158 25 C -0.159 4.159 26 C -0.013 4.013 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.024 0.976 46 H 0.063 0.937 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.126 0.874 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.870 -15.827 8.924 19.094 hybrid contribution 0.723 1.159 -0.837 1.602 sum -5.147 -14.668 8.088 17.523 Atomic orbital electron populations 1.21820 0.93516 1.02452 1.02808 1.21300 0.96954 0.93874 1.01891 1.21413 0.89693 0.99754 1.02116 0.87347 1.21927 1.03592 1.00486 0.94283 1.21281 0.91349 0.82165 0.74851 1.90639 1.70180 1.33557 1.52537 1.48214 1.08637 1.08154 1.68608 1.21675 0.80501 1.01517 0.97192 1.21965 1.01221 0.95119 0.96740 1.20310 0.95132 0.93776 0.94928 1.21997 0.99436 0.95662 0.97978 1.21071 0.97174 0.93322 0.86694 1.44270 1.72411 1.15212 1.01361 1.19505 1.17502 0.92721 1.09069 0.92028 1.25717 0.97567 1.00435 1.00813 1.70164 1.25067 1.41313 1.21338 0.85302 0.78637 0.79498 0.77591 1.19348 1.21945 1.21931 1.20545 0.94299 0.89091 0.90528 1.22058 0.99849 0.97134 0.96793 1.21947 0.95658 1.00961 0.97309 1.22021 0.97940 0.83771 0.97611 0.92110 0.91212 0.92045 0.93187 0.92454 0.92851 0.91150 0.89081 0.90454 0.90454 0.92162 0.90506 0.90304 0.93266 0.93704 0.95639 0.94277 0.93719 0.97600 0.93736 0.92338 0.91914 0.91211 0.87410 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.67 71.98 0.70 -1.16 16 2 C -0.10 -1.83 4.72 30.60 0.14 -1.69 16 3 C -0.11 -1.93 1.87 -11.54 -0.02 -1.95 16 4 H 0.11 1.65 7.18 -2.39 -0.02 1.63 16 5 C -0.15 -2.02 8.60 71.98 0.62 -1.40 16 6 C 0.51 12.78 6.94 87.66 0.61 13.39 16 7 O -0.59 -19.06 15.51 -3.04 -0.05 -19.11 16 8 N -0.60 -13.94 2.97 -818.04 -2.43 -16.36 16 9 C 0.11 2.71 5.98 86.51 0.52 3.22 16 10 C -0.11 -2.80 4.92 30.82 0.15 -2.64 16 11 C -0.04 -1.19 0.51 -52.13 -0.03 -1.21 16 12 C -0.11 -3.38 4.15 30.67 0.13 -3.26 16 13 C 0.14 5.44 6.04 86.36 0.52 5.96 16 14 N -0.61 -29.31 2.99 -699.09 -2.09 -31.40 16 15 C -0.26 -13.93 9.59 84.04 0.81 -13.13 16 16 H 0.06 3.29 7.88 -2.91 -0.02 3.27 16 17 C -0.05 -2.76 4.94 84.86 0.42 -2.34 16 18 N -0.93 -54.23 11.14 21.65 0.24 -53.99 16 19 Si 0.96 44.64 29.58 68.60 2.03 46.67 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 C 0.18 8.35 4.83 86.36 0.42 8.77 16 24 C -0.12 -4.28 4.90 30.67 0.15 -4.13 16 25 C -0.12 -3.18 4.15 30.67 0.13 -3.05 16 26 C 0.11 2.23 4.86 86.36 0.42 2.65 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.71 6.55 -2.39 -0.02 0.70 16 29 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.92 6.03 -2.38 -0.01 0.90 16 34 H 0.09 0.91 6.53 -2.39 -0.02 0.89 16 35 H 0.08 1.72 6.66 -2.39 -0.02 1.70 16 36 H 0.08 2.02 7.04 -2.38 -0.02 2.00 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.08 1.98 4.98 -2.39 -0.01 1.96 16 40 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.04 1.73 7.93 -2.39 -0.02 1.71 16 42 H 0.03 0.95 6.74 -2.39 -0.02 0.93 16 43 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 44 H 0.04 2.42 6.03 -2.39 -0.01 2.40 16 45 H 0.01 0.29 6.67 -2.39 -0.02 0.27 16 46 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.07 2.19 4.99 -2.39 -0.01 2.17 16 50 H 0.11 1.74 4.67 -2.38 -0.01 1.73 16 51 H 0.08 1.61 6.74 -2.39 -0.02 1.60 16 Total: -1.00 -65.87 364.60 4.28 -61.59 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.90 Total: 14.56 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 5.68 Total: -1.96 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -4.28 Total: -101.76 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.05 Total: -19.11 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.87 4.28 -61.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957505024.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.297 kcal (2) G-P(sol) polarization free energy of solvation -65.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds