Wall clock time and date at job start Fri Apr 10 2020 22:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46940 * 2 1 4 4 H 1.09000 * 110.05746 * 55.05852 * 3 2 1 5 5 C 1.54374 * 110.04954 * 293.58383 * 3 2 1 6 6 C 1.54887 * 104.20036 * 217.09065 * 5 3 2 7 7 C 1.54894 * 102.74727 * 37.96545 * 6 5 3 8 8 C 1.53874 * 110.03104 * 176.47557 * 3 2 1 9 9 H 1.09006 * 110.03375 * 238.62188 * 8 3 2 10 10 C 1.50700 * 110.03155 * 0.02562 * 8 3 2 11 11 O 1.21276 * 120.00173 * 66.10846 * 10 8 3 12 12 N 1.34782 * 119.99856 * 246.10891 * 10 8 3 13 13 C 1.46497 * 119.99792 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.46306 * 60.02448 * 13 12 10 15 15 C 1.53041 * 109.46036 * 179.97438 * 13 12 10 16 16 C 1.53187 * 109.31361 * 58.63663 * 15 13 12 17 17 N 1.46921 * 108.77738 * 54.63799 * 16 15 13 18 18 C 1.36942 * 120.63258 * 126.36543 * 17 16 15 19 19 H 1.08001 * 119.99894 * 330.22059 * 18 17 16 20 20 C 1.38807 * 119.99894 * 150.22088 * 18 17 16 21 21 N 1.31624 * 120.00216 * 336.00453 * 20 18 17 22 22 Si 1.86801 * 120.00205 * 156.00344 * 20 18 17 23 23 H 1.48500 * 109.47478 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.46855 * 59.99387 * 22 20 18 25 25 H 1.48499 * 109.46931 * 300.00040 * 22 20 18 26 26 C 1.46927 * 118.74023 * 306.64354 * 17 16 15 27 27 C 1.52766 * 109.00516 * 53.30377 * 26 17 16 28 28 H 1.09003 * 109.47367 * 59.99718 * 1 2 3 29 29 H 1.09001 * 109.47316 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47439 * 299.99883 * 1 2 3 31 31 H 1.08999 * 109.46753 * 240.00400 * 2 1 3 32 32 H 1.08992 * 109.46923 * 120.00444 * 2 1 3 33 33 H 1.09005 * 110.46070 * 98.42424 * 5 3 2 34 34 H 1.08996 * 110.62142 * 335.83835 * 5 3 2 35 35 H 1.09003 * 110.75752 * 279.66271 * 6 5 3 36 36 H 1.08989 * 110.91605 * 156.35660 * 6 5 3 37 37 H 1.08998 * 110.49135 * 203.37608 * 7 6 5 38 38 H 1.09009 * 110.48112 * 80.73380 * 7 6 5 39 39 H 0.96995 * 119.99964 * 359.97438 * 12 10 8 40 40 H 1.08995 * 109.47373 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.46908 * 299.96952 * 14 13 12 42 42 H 1.08997 * 109.47228 * 59.97442 * 14 13 12 43 43 H 1.09008 * 109.49534 * 298.68765 * 15 13 12 44 44 H 1.08994 * 109.52461 * 178.60990 * 15 13 12 45 45 H 1.09000 * 109.58975 * 294.84488 * 16 15 13 46 46 H 1.09007 * 109.70424 * 174.49437 * 16 15 13 47 47 H 0.97006 * 119.99559 * 354.22447 * 21 20 18 48 48 H 1.08994 * 109.59263 * 173.13746 * 26 17 16 49 49 H 1.08999 * 109.58325 * 293.56955 * 26 17 16 50 50 H 1.09000 * 109.56169 * 185.55297 * 27 26 17 51 51 H 1.08999 * 109.36291 * 65.50566 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6117 1.9904 0.8393 5 6 1.6693 2.1348 -1.3291 6 6 2.8905 3.0347 -1.6421 7 6 4.0851 2.1601 -1.1871 8 6 3.5760 1.4585 0.0889 9 1 3.8932 2.0134 0.9719 10 6 4.1044 0.0484 0.1479 11 8 3.9751 -0.6881 -0.8069 12 7 4.7207 -0.3943 1.2618 13 6 5.2348 -1.7649 1.3189 14 6 6.2764 -1.9650 0.2162 15 6 5.8838 -2.0095 2.6831 16 6 4.8477 -1.7744 3.7866 17 7 3.6723 -2.6140 3.5184 18 6 3.1895 -3.4651 4.4765 19 1 3.8615 -3.8971 5.2032 20 6 1.8363 -3.7724 4.5136 21 7 0.9586 -2.9439 3.9885 22 14 1.2609 -5.3617 5.3088 23 1 -0.2186 -5.4528 5.2192 24 1 1.6720 -5.3784 6.7357 25 1 1.8721 -6.5172 4.6042 26 6 3.0284 -2.5279 2.2006 27 6 4.0817 -2.7505 1.1167 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.7711 2.7400 -1.2059 34 1 1.5262 1.3977 -2.1190 35 1 2.8471 3.9590 -1.0660 36 1 2.9527 3.2488 -2.7090 37 1 4.9500 2.7836 -0.9605 38 1 4.3335 1.4254 -1.9531 39 1 4.8245 0.1949 2.0253 40 1 6.6594 -2.9846 0.2589 41 1 5.8147 -1.7908 -0.7556 42 1 7.0972 -1.2624 0.3599 43 1 6.7198 -1.3228 2.8167 44 1 6.2448 -3.0366 2.7359 45 1 4.5532 -0.7249 3.7938 46 1 5.2740 -2.0407 4.7539 47 1 1.2473 -2.0815 3.6510 48 1 2.2562 -3.2929 2.1204 49 1 2.5825 -1.5411 2.0757 50 1 3.6348 -2.5913 0.1354 51 1 4.4592 -3.7708 1.1838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045544152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:47 Heat of formation + Delta-G solvation = -42.047481 kcal Electronic energy + Delta-G solvation = -28566.317359 eV Core-core repulsion = 25078.896169 eV Total energy + Delta-G solvation = -3487.421190 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.64689 -38.54826 -36.69095 -34.55250 -32.96199 -32.07947 -30.95005 -29.99050 -28.88398 -27.46200 -27.29228 -23.94733 -22.88812 -22.39071 -22.05707 -20.73695 -20.47681 -19.12929 -18.65099 -17.40347 -16.70602 -15.86980 -15.10626 -14.80316 -14.53685 -14.28345 -14.22404 -13.99824 -13.54680 -13.44530 -13.32041 -13.16510 -12.94212 -12.58959 -12.30687 -11.95880 -11.93360 -11.70364 -11.62206 -11.43986 -11.15369 -11.10822 -10.95608 -10.85516 -10.69138 -10.65537 -10.55911 -10.47540 -10.38694 -10.06484 -10.05946 -9.96012 -9.79649 -9.23776 -8.93736 -8.55766 -8.33763 -6.82126 -6.02965 -3.22509 2.98428 3.49941 3.52983 3.54090 3.71695 4.48761 4.61035 4.62655 4.71210 5.09560 5.24187 5.26197 5.32634 5.35228 5.37041 5.41407 5.46535 5.55029 5.58385 5.60175 5.62872 5.75836 5.84698 5.86066 5.88564 5.93328 5.97984 6.06720 6.09353 6.13347 6.15465 6.22891 6.27021 6.34274 6.36700 6.43953 6.50284 6.55580 6.61555 6.66449 6.73551 6.75636 6.86338 7.04363 7.16404 7.32828 7.93775 8.04392 8.61689 8.63733 9.15384 9.87550 10.33464 11.24375 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.015745 B = 0.005143 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.936443 B = 5443.188101 C = 6617.404139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C -0.072 4.072 4 H 0.074 0.926 5 C -0.115 4.115 6 C -0.123 4.123 7 C -0.108 4.108 8 C -0.111 4.111 9 H 0.081 0.919 10 C 0.527 3.473 11 O -0.537 6.537 12 N -0.714 5.714 13 C 0.184 3.816 14 C -0.159 4.159 15 C -0.137 4.137 16 C 0.148 3.852 17 N -0.597 5.597 18 C -0.352 4.352 19 H 0.053 0.947 20 C -0.021 4.021 21 N -0.913 5.913 22 Si 1.063 2.937 23 H -0.286 1.286 24 H -0.293 1.293 25 H -0.294 1.294 26 C 0.157 3.843 27 C -0.146 4.146 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.395 0.605 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.012 0.988 46 H 0.055 0.945 47 H 0.269 0.731 48 H 0.071 0.929 49 H 0.022 0.978 50 H 0.074 0.926 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.423 11.018 -9.104 15.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C -0.091 4.091 4 H 0.092 0.908 5 C -0.153 4.153 6 C -0.160 4.160 7 C -0.146 4.146 8 C -0.133 4.133 9 H 0.099 0.901 10 C 0.314 3.686 11 O -0.415 6.415 12 N -0.365 5.365 13 C 0.099 3.901 14 C -0.217 4.217 15 C -0.177 4.177 16 C 0.022 3.978 17 N -0.321 5.321 18 C -0.481 4.481 19 H 0.070 0.930 20 C -0.224 4.224 21 N -0.553 5.553 22 Si 0.893 3.107 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.221 1.221 26 C 0.032 3.968 27 C -0.186 4.186 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.229 0.771 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.029 0.971 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.039 0.961 50 H 0.093 0.907 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.985 9.500 -9.440 14.290 hybrid contribution 1.545 1.229 0.359 2.007 sum 6.530 10.729 -9.080 15.498 Atomic orbital electron populations 1.21726 0.96079 1.01774 1.00811 1.22074 0.95916 0.95220 1.04082 1.21668 0.91816 0.97477 0.98139 0.90752 1.22448 0.97395 0.98279 0.97172 1.22472 0.94892 0.97928 1.00747 1.22312 0.97662 0.98485 0.96177 1.22023 0.97298 0.93812 1.00129 0.90060 1.20262 0.76790 0.88990 0.82531 1.90575 1.56934 1.57438 1.36583 1.46247 1.59073 1.14495 1.16656 1.20218 0.93692 0.81319 0.94886 1.22207 0.98012 1.01025 1.00467 1.22320 0.98332 1.02012 0.95029 1.20848 0.88380 0.93195 0.95400 1.44086 1.31906 1.45933 1.10148 1.19930 0.93225 1.22955 1.11983 0.92964 1.25827 0.91934 1.04150 1.00465 1.70778 1.35400 1.08479 1.40596 0.83557 0.76039 0.75617 0.75504 1.21108 1.22047 1.22090 1.20851 0.93633 0.99010 0.83324 1.22390 0.97400 0.97706 1.01069 0.93398 0.92631 0.93140 0.89910 0.90922 0.91819 0.91141 0.91676 0.91575 0.91742 0.90284 0.77055 0.92398 0.90700 0.93546 0.92645 0.90800 0.97076 0.92609 0.92049 0.91035 0.96058 0.90745 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.75 37.16 0.36 -1.82 16 2 C -0.14 -2.15 4.02 -26.73 -0.11 -2.26 16 3 C -0.07 -0.93 2.95 -89.45 -0.26 -1.20 16 4 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 5 C -0.12 -1.28 5.46 -25.02 -0.14 -1.42 16 6 C -0.12 -1.19 6.91 -24.74 -0.17 -1.36 16 7 C -0.11 -1.19 6.32 -25.07 -0.16 -1.35 16 8 C -0.11 -1.39 3.32 -90.66 -0.30 -1.69 16 9 H 0.08 0.90 7.96 -51.93 -0.41 0.48 16 10 C 0.53 8.07 4.33 -10.98 -0.05 8.02 16 11 O -0.54 -9.56 10.36 5.56 0.06 -9.51 16 12 N -0.71 -10.87 4.10 -47.57 -0.20 -11.06 16 13 C 0.18 3.07 0.66 -131.78 -0.09 2.98 16 14 C -0.16 -2.41 8.40 37.16 0.31 -2.09 16 15 C -0.14 -2.28 4.96 -26.61 -0.13 -2.41 16 16 C 0.15 2.97 6.24 -3.72 -0.02 2.94 16 17 N -0.60 -14.58 2.83 -172.59 -0.49 -15.07 16 18 C -0.35 -9.74 9.47 -15.06 -0.14 -9.88 16 19 H 0.05 1.46 7.94 -52.49 -0.42 1.04 16 20 C -0.02 -0.60 4.69 -17.43 -0.08 -0.68 16 21 N -0.91 -27.20 12.49 55.49 0.69 -26.51 16 22 Si 1.06 25.36 29.98 -169.99 -5.10 20.26 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.16 3.68 4.42 -3.93 -0.02 3.67 16 27 C -0.15 -2.92 4.65 -26.83 -0.12 -3.04 16 28 H 0.05 0.61 7.46 -51.93 -0.39 0.22 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.44 6.20 -51.93 -0.32 1.11 16 32 H 0.07 1.37 4.73 -51.93 -0.25 1.12 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.84 7.79 -51.93 -0.40 0.44 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.58 8.14 -51.94 -0.42 0.16 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.00 7.33 -51.92 -0.38 0.62 16 39 H 0.40 5.49 7.14 -40.82 -0.29 5.20 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.07 1.24 6.17 -51.93 -0.32 0.92 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 44 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.01 0.22 6.94 -51.93 -0.36 -0.14 16 46 H 0.06 1.13 7.93 -51.92 -0.41 0.72 16 47 H 0.27 8.06 6.73 -40.82 -0.27 7.78 16 48 H 0.07 1.94 6.45 -51.93 -0.33 1.61 16 49 H 0.02 0.51 4.86 -51.93 -0.25 0.26 16 50 H 0.07 1.54 6.20 -51.93 -0.32 1.21 16 51 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 367.17 15.07 5.53 5.53 Total: -1.00 -30.29 367.17 -9.62 -39.91 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -9.01 Total: 8.03 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.12 Total: -11.59 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.01 Total: -52.64 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.06 Total: -9.51 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.10 Total: 20.26 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.29 -9.62 -39.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045544152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.136 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds