Wall clock time and date at job start Fri Apr 10 2020 22:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.43828 * 2 1 4 4 C 1.54892 * 110.48283 * 122.53600 * 2 1 3 5 5 C 1.54893 * 102.74631 * 156.75196 * 4 2 1 6 6 C 1.54262 * 104.19881 * 322.05599 * 5 4 2 7 7 H 1.09001 * 110.03495 * 264.28235 * 6 5 4 8 8 C 1.50691 * 110.03377 * 142.89526 * 6 5 4 9 9 O 1.21281 * 120.00092 * 249.22032 * 8 6 5 10 10 N 1.34770 * 120.00134 * 69.21929 * 8 6 5 11 11 C 1.46507 * 120.00482 * 184.82747 * 10 8 6 12 12 C 1.52993 * 109.47536 * 184.30876 * 11 10 8 13 13 N 1.46497 * 109.46930 * 54.63823 * 12 11 10 14 14 C 1.36934 * 120.00141 * 55.99146 * 13 12 11 15 15 H 1.08003 * 119.99620 * 5.19400 * 14 13 12 16 16 C 1.38814 * 120.00491 * 185.18697 * 14 13 12 17 17 N 1.31621 * 119.99585 * 354.91114 * 16 14 13 18 18 Si 1.86797 * 120.00037 * 174.90415 * 16 14 13 19 19 H 1.48503 * 109.46929 * 95.00048 * 18 16 14 20 20 H 1.48506 * 109.46870 * 214.99717 * 18 16 14 21 21 H 1.48495 * 109.47545 * 334.99508 * 18 16 14 22 22 C 1.53001 * 109.47306 * 174.64136 * 12 11 10 23 23 C 1.53006 * 109.47164 * 180.02562 * 22 12 11 24 24 C 1.53000 * 109.46942 * 299.99998 * 23 22 12 25 25 C 1.53001 * 109.47189 * 60.00018 * 24 23 22 26 26 C 1.52997 * 109.47317 * 299.99690 * 25 24 23 27 27 C 1.53885 * 106.63923 * 23.58539 * 6 5 4 28 28 H 1.08994 * 109.46985 * 298.92234 * 1 2 3 29 29 H 1.09010 * 109.46496 * 58.91618 * 1 2 3 30 30 H 1.08994 * 109.47372 * 178.91288 * 1 2 3 31 31 H 1.09000 * 110.75879 * 38.44033 * 4 2 1 32 32 H 1.08994 * 110.91789 * 275.14071 * 4 2 1 33 33 H 1.09007 * 110.48152 * 203.37891 * 5 4 2 34 34 H 1.08995 * 110.59743 * 80.79667 * 5 4 2 35 35 H 0.96998 * 120.00270 * 4.83209 * 10 8 6 36 36 H 1.09001 * 109.46547 * 64.30728 * 11 10 8 37 37 H 1.09001 * 109.47255 * 304.31167 * 11 10 8 38 38 H 0.97006 * 120.00567 * 235.98980 * 13 12 11 39 39 H 0.96996 * 120.00040 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.46970 * 60.00198 * 22 12 11 41 41 H 1.09005 * 109.46807 * 299.99922 * 22 12 11 42 42 H 1.09001 * 109.46943 * 179.97438 * 23 22 12 43 43 H 1.09003 * 109.46891 * 59.99743 * 23 22 12 44 44 H 1.08997 * 109.47025 * 180.02562 * 24 23 22 45 45 H 1.09004 * 109.46652 * 299.99848 * 24 23 22 46 46 H 1.08990 * 109.47265 * 60.00451 * 25 24 23 47 47 H 1.09005 * 109.46807 * 180.02562 * 25 24 23 48 48 H 1.08990 * 109.47560 * 180.02562 * 26 25 24 49 49 H 1.09004 * 109.47374 * 300.00689 * 26 25 24 50 50 H 1.08995 * 110.02853 * 119.30521 * 27 6 5 51 51 H 1.08990 * 110.03297 * 240.73989 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0720 -0.7804 1.2233 5 6 3.4919 -1.1940 0.7629 6 6 3.3202 -1.5378 -0.7311 7 1 3.1758 -2.6112 -0.8531 8 6 4.5318 -1.0889 -1.5066 9 8 4.4445 -0.1633 -2.2855 10 7 5.7123 -1.7159 -1.3347 11 6 6.9132 -1.2140 -2.0074 12 6 8.0841 -2.1599 -1.7336 13 7 7.7132 -3.5221 -2.1251 14 6 7.2878 -3.7758 -3.4017 15 1 7.3052 -2.9903 -4.1428 16 6 6.8343 -5.0424 -3.7435 17 7 6.9065 -6.0249 -2.8706 18 14 6.1215 -5.3525 -5.4420 19 1 7.1841 -5.8787 -6.3362 20 1 5.0212 -6.3450 -5.3434 21 1 5.5926 -4.0807 -5.9967 22 6 9.3026 -1.7107 -2.5425 23 6 10.4734 -2.6570 -2.2693 24 6 10.8133 -2.6303 -0.7777 25 6 9.5948 -3.0796 0.0312 26 6 8.4240 -2.1333 -0.2420 27 6 2.0725 -0.7795 -1.2171 28 1 -0.3633 0.4970 0.8994 29 1 -0.3633 0.5306 -0.8802 30 1 -0.3634 -1.0274 -0.0195 31 1 1.4594 -1.6595 1.4231 32 1 2.1227 -0.1387 2.1029 33 1 3.8337 -2.0674 1.3185 34 1 4.1911 -0.3671 0.8863 35 1 5.7669 -2.4995 -0.7657 36 1 7.1528 -0.2202 -1.6292 37 1 6.7327 -1.1605 -3.0810 38 1 7.7690 -4.2444 -1.4800 39 1 6.5900 -6.9101 -3.1095 40 1 9.5785 -0.6972 -2.2512 41 1 9.0605 -1.7302 -3.6052 42 1 11.3413 -2.3372 -2.8459 43 1 10.1971 -3.6704 -2.5609 44 1 11.6476 -3.3041 -0.5831 45 1 11.0894 -1.6169 -0.4862 46 1 9.3186 -4.0928 -0.2603 47 1 9.8368 -3.0601 1.0938 48 1 7.5561 -2.4530 0.3345 49 1 8.7002 -1.1199 0.0495 50 1 2.3434 -0.0868 -2.0138 51 1 1.3224 -1.4849 -1.5741 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115758011.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:44 Heat of formation + Delta-G solvation = -66.407563 kcal Electronic energy + Delta-G solvation = -27345.019417 eV Core-core repulsion = 23856.541895 eV Total energy + Delta-G solvation = -3488.477523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.88668 -38.77218 -37.17117 -34.39743 -33.22671 -31.69618 -30.86527 -30.25050 -28.87656 -28.46996 -25.94432 -24.53151 -23.75473 -22.22799 -21.48319 -20.40867 -20.07652 -19.10994 -18.27578 -17.19850 -16.97632 -15.56158 -15.24872 -15.12702 -14.75635 -14.33051 -14.15553 -13.89394 -13.67245 -13.60682 -13.56438 -12.97481 -12.92175 -12.79260 -12.17084 -11.93758 -11.91810 -11.72574 -11.62809 -11.44918 -11.10339 -11.08523 -10.87877 -10.83964 -10.76265 -10.72387 -10.58570 -10.57265 -10.35493 -10.18751 -10.06979 -9.78700 -9.60401 -9.31093 -9.23449 -8.86415 -8.31761 -6.99690 -5.79842 -3.07366 3.18591 3.42021 3.49399 3.51917 3.82061 4.56571 4.58087 4.61405 4.80035 5.19371 5.23163 5.25657 5.26682 5.32458 5.41421 5.48500 5.54038 5.59497 5.62076 5.63652 5.69605 5.73689 5.79700 5.81236 5.90244 5.95346 5.98939 6.02518 6.03149 6.10037 6.12258 6.15440 6.19413 6.26177 6.31726 6.41078 6.43223 6.51517 6.52554 6.59146 6.77179 6.80158 6.82762 6.98675 7.14699 7.18991 7.73265 8.18272 8.38576 8.82954 9.51689 10.04552 10.41044 11.42310 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.004730 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.621300 B = 5918.725398 C = 7377.892713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.073 0.927 4 C -0.118 4.118 5 C -0.111 4.111 6 C -0.114 4.114 7 H 0.095 0.905 8 C 0.515 3.485 9 O -0.558 6.558 10 N -0.697 5.697 11 C 0.118 3.882 12 C 0.191 3.809 13 N -0.709 5.709 14 C -0.227 4.227 15 H 0.068 0.932 16 C -0.008 4.008 17 N -0.932 5.932 18 Si 0.897 3.103 19 H -0.292 1.292 20 H -0.293 1.293 21 H -0.282 1.282 22 C -0.118 4.118 23 C -0.110 4.110 24 C -0.113 4.113 25 C -0.116 4.116 26 C -0.113 4.113 27 C -0.113 4.113 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.402 0.598 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.385 0.615 39 H 0.253 0.747 40 H 0.044 0.956 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.073 0.927 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.058 0.942 50 H 0.088 0.912 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.415 9.164 10.214 14.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.091 0.909 4 C -0.156 4.156 5 C -0.149 4.149 6 C -0.136 4.136 7 H 0.113 0.887 8 C 0.301 3.699 9 O -0.437 6.437 10 N -0.346 5.346 11 C -0.008 4.008 12 C 0.099 3.901 13 N -0.352 5.352 14 C -0.358 4.358 15 H 0.086 0.914 16 C -0.204 4.204 17 N -0.580 5.580 18 Si 0.728 3.272 19 H -0.219 1.219 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.158 4.158 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.153 4.153 26 C -0.151 4.151 27 C -0.151 4.151 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.237 0.763 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.220 0.780 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.099 0.901 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.077 0.923 50 H 0.107 0.893 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.519 9.806 9.494 14.095 hybrid contribution -0.314 -0.994 -0.670 1.239 sum -3.833 8.812 8.824 13.046 Atomic orbital electron populations 1.21793 0.95195 1.01689 1.01346 1.21979 0.95192 0.99456 0.94873 0.90875 1.22565 0.95789 0.99822 0.97410 1.22283 0.97637 1.01559 0.93388 1.21900 0.94074 1.02000 0.95595 0.88651 1.20408 0.84504 0.82703 0.82269 1.90605 1.84906 1.30780 1.37428 1.45697 1.07908 1.31520 1.49456 1.21769 0.85380 0.95767 0.97899 1.19816 0.91129 0.87138 0.91990 1.42450 1.78671 1.02466 1.11573 1.19075 1.33770 0.95121 0.87801 0.91388 1.24634 1.02106 0.96118 0.97552 1.69652 1.52932 1.01013 1.34432 0.86324 0.78746 0.77551 0.84568 1.21938 1.21925 1.20787 1.21863 0.95944 0.97073 1.00961 1.21374 0.96622 1.02012 0.94703 1.21475 0.97238 0.99968 0.96347 1.21473 0.95051 1.00548 0.98256 1.21695 0.97973 0.99195 0.96285 1.22230 0.94959 0.99272 0.98609 0.92943 0.92761 0.92653 0.91291 0.91669 0.90971 0.91352 0.76279 0.93514 0.91546 0.78014 0.93684 0.93725 0.91915 0.93732 0.90114 0.93011 0.93170 0.90868 0.93212 0.92394 0.92318 0.89346 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.13 37.16 0.34 -0.99 16 2 C -0.10 -1.07 3.46 -88.90 -0.31 -1.38 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 4 C -0.12 -1.19 6.33 -24.74 -0.16 -1.35 16 5 C -0.11 -1.28 6.35 -25.07 -0.16 -1.44 16 6 C -0.11 -1.63 3.30 -90.65 -0.30 -1.93 16 7 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 8 C 0.52 9.26 6.95 -10.99 -0.08 9.18 16 9 O -0.56 -11.85 15.22 5.56 0.08 -11.76 16 10 N -0.70 -12.28 5.13 -60.30 -0.31 -12.59 16 11 C 0.12 2.17 4.26 -4.04 -0.02 2.15 16 12 C 0.19 3.38 0.40 -131.82 -0.05 3.33 16 13 N -0.71 -15.36 3.61 -47.23 -0.17 -15.53 16 14 C -0.23 -5.74 8.71 -15.06 -0.13 -5.87 16 15 H 0.07 1.77 6.77 -52.48 -0.36 1.42 16 16 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 17 N -0.93 -26.34 13.07 55.49 0.73 -25.61 16 18 Si 0.90 22.17 29.56 -169.99 -5.02 17.15 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 22 C -0.12 -2.03 4.62 -26.73 -0.12 -2.15 16 23 C -0.11 -1.81 5.77 -26.73 -0.15 -1.96 16 24 C -0.11 -1.61 5.92 -26.73 -0.16 -1.77 16 25 C -0.12 -1.70 5.75 -26.73 -0.15 -1.85 16 26 C -0.11 -1.70 4.67 -26.73 -0.12 -1.82 16 27 C -0.11 -1.53 5.97 -25.55 -0.15 -1.68 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.05 0.50 8.11 -51.93 -0.42 0.08 16 31 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.83 7.85 -51.93 -0.41 0.42 16 35 H 0.40 6.84 7.28 -40.82 -0.30 6.54 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.43 7.34 -51.93 -0.38 1.05 16 38 H 0.38 8.94 6.40 -40.82 -0.26 8.68 16 39 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 1.19 7.40 -51.93 -0.38 0.81 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 1.60 7.60 -51.93 -0.39 1.20 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 1.25 6.78 -51.93 -0.35 0.89 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.84 7.12 -51.93 -0.37 0.47 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.09 1.41 6.41 -51.93 -0.33 1.08 16 51 H 0.06 0.83 7.82 -51.93 -0.41 0.42 16 LS Contribution 384.10 15.07 5.79 5.79 Total: -1.00 -28.71 384.10 -10.14 -38.86 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -9.41 Total: 13.54 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -1.82 Total: -9.85 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.25 Total: -53.72 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.71 -10.14 -38.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115758011.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.552 kcal (2) G-P(sol) polarization free energy of solvation -28.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds