Wall clock time and date at job start Fri Apr 10 2020 22:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.43828 * 2 1 4 4 C 1.54892 * 110.48283 * 122.53600 * 2 1 3 5 5 C 1.54893 * 102.74631 * 156.75196 * 4 2 1 6 6 C 1.54262 * 104.19881 * 322.05599 * 5 4 2 7 7 H 1.09001 * 110.03495 * 264.28235 * 6 5 4 8 8 C 1.50691 * 110.03377 * 142.89526 * 6 5 4 9 9 O 1.21281 * 120.00092 * 249.22032 * 8 6 5 10 10 N 1.34770 * 120.00134 * 69.21929 * 8 6 5 11 11 C 1.46507 * 120.00482 * 184.82747 * 10 8 6 12 12 C 1.52993 * 109.47536 * 184.30876 * 11 10 8 13 13 N 1.46497 * 109.46930 * 54.63823 * 12 11 10 14 14 C 1.36934 * 120.00141 * 55.99146 * 13 12 11 15 15 H 1.08003 * 119.99620 * 5.19400 * 14 13 12 16 16 C 1.38814 * 120.00491 * 185.18697 * 14 13 12 17 17 N 1.31621 * 119.99585 * 354.91114 * 16 14 13 18 18 Si 1.86797 * 120.00037 * 174.90415 * 16 14 13 19 19 H 1.48503 * 109.46929 * 95.00048 * 18 16 14 20 20 H 1.48506 * 109.46870 * 214.99717 * 18 16 14 21 21 H 1.48495 * 109.47545 * 334.99508 * 18 16 14 22 22 C 1.53001 * 109.47306 * 174.64136 * 12 11 10 23 23 C 1.53006 * 109.47164 * 180.02562 * 22 12 11 24 24 C 1.53000 * 109.46942 * 299.99998 * 23 22 12 25 25 C 1.53001 * 109.47189 * 60.00018 * 24 23 22 26 26 C 1.52997 * 109.47317 * 299.99690 * 25 24 23 27 27 C 1.53885 * 106.63923 * 23.58539 * 6 5 4 28 28 H 1.08994 * 109.46985 * 298.92234 * 1 2 3 29 29 H 1.09010 * 109.46496 * 58.91618 * 1 2 3 30 30 H 1.08994 * 109.47372 * 178.91288 * 1 2 3 31 31 H 1.09000 * 110.75879 * 38.44033 * 4 2 1 32 32 H 1.08994 * 110.91789 * 275.14071 * 4 2 1 33 33 H 1.09007 * 110.48152 * 203.37891 * 5 4 2 34 34 H 1.08995 * 110.59743 * 80.79667 * 5 4 2 35 35 H 0.96998 * 120.00270 * 4.83209 * 10 8 6 36 36 H 1.09001 * 109.46547 * 64.30728 * 11 10 8 37 37 H 1.09001 * 109.47255 * 304.31167 * 11 10 8 38 38 H 0.97006 * 120.00567 * 235.98980 * 13 12 11 39 39 H 0.96996 * 120.00040 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.46970 * 60.00198 * 22 12 11 41 41 H 1.09005 * 109.46807 * 299.99922 * 22 12 11 42 42 H 1.09001 * 109.46943 * 179.97438 * 23 22 12 43 43 H 1.09003 * 109.46891 * 59.99743 * 23 22 12 44 44 H 1.08997 * 109.47025 * 180.02562 * 24 23 22 45 45 H 1.09004 * 109.46652 * 299.99848 * 24 23 22 46 46 H 1.08990 * 109.47265 * 60.00451 * 25 24 23 47 47 H 1.09005 * 109.46807 * 180.02562 * 25 24 23 48 48 H 1.08990 * 109.47560 * 180.02562 * 26 25 24 49 49 H 1.09004 * 109.47374 * 300.00689 * 26 25 24 50 50 H 1.08995 * 110.02853 * 119.30521 * 27 6 5 51 51 H 1.08990 * 110.03297 * 240.73989 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0720 -0.7804 1.2233 5 6 3.4919 -1.1940 0.7629 6 6 3.3202 -1.5378 -0.7311 7 1 3.1758 -2.6112 -0.8531 8 6 4.5318 -1.0889 -1.5066 9 8 4.4445 -0.1633 -2.2855 10 7 5.7123 -1.7159 -1.3347 11 6 6.9132 -1.2140 -2.0074 12 6 8.0841 -2.1599 -1.7336 13 7 7.7132 -3.5221 -2.1251 14 6 7.2878 -3.7758 -3.4017 15 1 7.3052 -2.9903 -4.1428 16 6 6.8343 -5.0424 -3.7435 17 7 6.9065 -6.0249 -2.8706 18 14 6.1215 -5.3525 -5.4420 19 1 7.1841 -5.8787 -6.3362 20 1 5.0212 -6.3450 -5.3434 21 1 5.5926 -4.0807 -5.9967 22 6 9.3026 -1.7107 -2.5425 23 6 10.4734 -2.6570 -2.2693 24 6 10.8133 -2.6303 -0.7777 25 6 9.5948 -3.0796 0.0312 26 6 8.4240 -2.1333 -0.2420 27 6 2.0725 -0.7795 -1.2171 28 1 -0.3633 0.4970 0.8994 29 1 -0.3633 0.5306 -0.8802 30 1 -0.3634 -1.0274 -0.0195 31 1 1.4594 -1.6595 1.4231 32 1 2.1227 -0.1387 2.1029 33 1 3.8337 -2.0674 1.3185 34 1 4.1911 -0.3671 0.8863 35 1 5.7669 -2.4995 -0.7657 36 1 7.1528 -0.2202 -1.6292 37 1 6.7327 -1.1605 -3.0810 38 1 7.7690 -4.2444 -1.4800 39 1 6.5900 -6.9101 -3.1095 40 1 9.5785 -0.6972 -2.2512 41 1 9.0605 -1.7302 -3.6052 42 1 11.3413 -2.3372 -2.8459 43 1 10.1971 -3.6704 -2.5609 44 1 11.6476 -3.3041 -0.5831 45 1 11.0894 -1.6169 -0.4862 46 1 9.3186 -4.0928 -0.2603 47 1 9.8368 -3.0601 1.0938 48 1 7.5561 -2.4530 0.3345 49 1 8.7002 -1.1199 0.0495 50 1 2.3434 -0.0868 -2.0138 51 1 1.3224 -1.4849 -1.5741 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115758011.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:43 Heat of formation + Delta-G solvation = -81.953526 kcal Electronic energy + Delta-G solvation = -27345.693541 eV Core-core repulsion = 23856.541895 eV Total energy + Delta-G solvation = -3489.151646 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.25137 -40.11996 -38.33375 -35.88082 -35.04045 -33.03551 -32.17567 -31.55112 -30.28419 -29.73967 -27.16809 -25.74708 -25.56114 -23.53382 -22.65994 -21.70214 -21.11509 -20.34292 -19.76738 -19.03386 -18.32457 -17.00050 -16.71875 -16.25188 -16.23643 -15.83801 -15.55797 -15.29679 -15.19627 -14.93626 -14.49872 -14.37898 -14.27187 -13.78403 -13.58224 -13.42110 -13.25194 -12.92943 -12.85518 -12.81002 -12.62355 -12.60170 -12.48391 -12.17112 -12.07039 -11.92189 -11.72119 -11.70158 -11.62832 -11.48085 -11.33234 -11.22274 -11.13798 -10.84730 -10.70246 -10.59221 -9.85044 -8.91145 -7.89773 -5.12425 1.40399 1.44224 1.49976 1.75119 2.42607 2.57273 3.43265 3.57895 3.64562 3.81522 3.81907 3.91631 4.03518 4.13117 4.19885 4.37678 4.40264 4.46749 4.49845 4.55283 4.61083 4.66104 4.73261 4.76267 4.76549 4.76937 4.81262 4.91950 4.96203 4.98237 5.05582 5.08084 5.10663 5.17627 5.18432 5.22117 5.27411 5.36219 5.41995 5.46821 5.48718 5.51174 5.57507 5.59253 5.61549 5.74090 5.79067 6.33980 6.73335 7.38431 7.43297 8.16508 8.42758 9.32764 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.004730 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.621300 B = 5918.725398 C = 7377.892713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 H 0.065 0.935 4 C -0.110 4.110 5 C -0.106 4.106 6 C -0.113 4.113 7 H 0.097 0.903 8 C 0.509 3.491 9 O -0.596 6.596 10 N -0.694 5.694 11 C 0.124 3.876 12 C 0.190 3.810 13 N -0.708 5.708 14 C -0.204 4.204 15 H 0.057 0.943 16 C -0.060 4.060 17 N -0.958 5.958 18 Si 0.941 3.059 19 H -0.293 1.293 20 H -0.297 1.297 21 H -0.287 1.287 22 C -0.117 4.117 23 C -0.106 4.106 24 C -0.108 4.108 25 C -0.113 4.113 26 C -0.107 4.107 27 C -0.115 4.115 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.406 0.594 36 H 0.064 0.936 37 H 0.027 0.973 38 H 0.378 0.622 39 H 0.247 0.753 40 H 0.072 0.928 41 H 0.033 0.967 42 H 0.057 0.943 43 H 0.039 0.961 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.077 0.923 48 H 0.062 0.938 49 H 0.084 0.916 50 H 0.057 0.943 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 10.268 12.758 16.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 H 0.083 0.917 4 C -0.148 4.148 5 C -0.144 4.144 6 C -0.134 4.134 7 H 0.115 0.885 8 C 0.296 3.704 9 O -0.478 6.478 10 N -0.342 5.342 11 C -0.003 4.003 12 C 0.099 3.901 13 N -0.349 5.349 14 C -0.337 4.337 15 H 0.074 0.926 16 C -0.253 4.253 17 N -0.609 5.609 18 Si 0.773 3.227 19 H -0.221 1.221 20 H -0.224 1.224 21 H -0.213 1.213 22 C -0.157 4.157 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.150 4.150 26 C -0.145 4.145 27 C -0.153 4.153 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.242 0.758 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.212 0.788 39 H 0.056 0.944 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.062 0.938 47 H 0.096 0.904 48 H 0.081 0.919 49 H 0.102 0.898 50 H 0.076 0.924 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.382 10.934 12.049 16.618 hybrid contribution -0.296 -1.232 -1.512 1.972 sum -3.677 9.703 10.537 14.788 Atomic orbital electron populations 1.21769 0.93675 1.02215 1.02041 1.21960 0.96443 0.98732 0.94127 0.91675 1.22560 0.94515 1.00400 0.97301 1.22298 0.98824 1.02045 0.91187 1.21978 0.92383 1.01920 0.97113 0.88527 1.21125 0.85395 0.82007 0.81850 1.90586 1.85566 1.32549 1.39121 1.45717 1.07829 1.31528 1.49160 1.21667 0.85940 0.96908 0.95767 1.20036 0.90892 0.84670 0.94494 1.42472 1.78282 1.04156 1.10015 1.19150 1.31256 0.94242 0.89035 0.92552 1.25077 1.04009 0.96521 0.99704 1.69742 1.54844 1.00919 1.35407 0.85606 0.77951 0.76782 0.82340 1.22061 1.22366 1.21334 1.21841 0.95905 0.98861 0.99105 1.21311 0.96703 0.99321 0.97064 1.21455 0.97323 1.01676 0.94049 1.21444 0.94971 0.98667 0.99957 1.21666 0.98505 1.00833 0.93485 1.22238 0.94961 0.99034 0.99034 0.91310 0.93106 0.92156 0.90084 0.89809 0.89409 0.91886 0.75766 0.91834 0.95408 0.78768 0.94400 0.90914 0.94764 0.92390 0.94166 0.92051 0.90714 0.93834 0.90444 0.91890 0.89773 0.92388 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.13 71.98 0.66 -1.66 16 2 C -0.09 -1.94 3.46 -9.68 -0.03 -1.97 16 3 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 4 C -0.11 -1.90 6.33 31.89 0.20 -1.70 16 5 C -0.11 -2.22 6.35 31.67 0.20 -2.02 16 6 C -0.11 -3.14 3.30 -10.82 -0.04 -3.18 16 7 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 8 C 0.51 18.44 6.95 87.66 0.61 19.05 16 9 O -0.60 -26.09 15.22 -3.03 -0.05 -26.13 16 10 N -0.69 -24.36 5.13 -463.07 -2.38 -26.74 16 11 C 0.12 4.54 4.26 86.38 0.37 4.90 16 12 C 0.19 6.57 0.40 3.60 0.00 6.57 16 13 N -0.71 -31.05 3.61 -303.34 -1.09 -32.15 16 14 C -0.20 -10.62 8.71 84.03 0.73 -9.89 16 15 H 0.06 3.05 6.77 -2.91 -0.02 3.03 16 16 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 17 N -0.96 -55.25 13.07 21.65 0.28 -54.97 16 18 Si 0.94 46.77 29.56 68.60 2.03 48.80 16 19 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 20 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 21 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 22 C -0.12 -3.91 4.62 30.60 0.14 -3.77 16 23 C -0.11 -3.39 5.77 30.60 0.18 -3.21 16 24 C -0.11 -2.75 5.92 30.59 0.18 -2.57 16 25 C -0.11 -3.01 5.75 30.59 0.18 -2.84 16 26 C -0.11 -2.91 4.67 30.60 0.14 -2.77 16 27 C -0.11 -3.08 5.97 31.36 0.19 -2.89 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.06 0.94 8.11 -2.39 -0.02 0.92 16 31 H 0.08 1.24 8.06 -2.39 -0.02 1.22 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.06 1.40 7.85 -2.39 -0.02 1.38 16 35 H 0.41 13.58 7.28 -92.71 -0.67 12.91 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.03 1.23 7.34 -2.39 -0.02 1.21 16 38 H 0.38 17.81 6.40 -92.70 -0.59 17.21 16 39 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 40 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.03 1.31 7.40 -2.38 -0.02 1.30 16 42 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.04 1.60 7.60 -2.39 -0.02 1.58 16 44 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 46 H 0.04 1.43 6.78 -2.39 -0.02 1.42 16 47 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 48 H 0.06 1.67 7.12 -2.39 -0.02 1.65 16 49 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 50 H 0.06 1.92 6.41 -2.39 -0.02 1.90 16 51 H 0.07 1.79 7.82 -2.39 -0.02 1.77 16 Total: -1.00 -64.32 384.10 2.60 -61.72 By element: Atomic # 1 Polarization: 40.65 SS G_CDS: -0.37 Total: 40.28 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 4.17 Total: -10.81 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -3.19 Total: -113.85 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.05 Total: -26.13 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -64.32 2.60 -61.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115758011.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.230 kcal (2) G-P(sol) polarization free energy of solvation -64.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds