Wall clock time and date at job start Fri Apr 10 2020 22:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.01716 * 2 1 4 4 C 1.53870 * 110.03660 * 121.39570 * 2 1 3 5 5 C 1.54265 * 106.60025 * 119.28335 * 4 2 1 6 6 C 1.54891 * 104.19500 * 23.61363 * 5 4 2 7 7 H 1.08997 * 110.75857 * 80.55711 * 6 5 4 8 8 C 1.53002 * 110.75632 * 203.74147 * 6 5 4 9 9 C 1.50700 * 109.47037 * 293.54960 * 8 6 5 10 10 O 1.21277 * 120.00263 * 359.97438 * 9 8 6 11 11 N 1.34785 * 119.99551 * 180.02562 * 9 8 6 12 12 C 1.46921 * 120.63364 * 359.71922 * 11 9 8 13 13 C 1.52766 * 109.00659 * 233.58594 * 12 11 9 14 14 C 1.53039 * 109.38111 * 305.58518 * 13 12 11 15 15 C 1.53000 * 109.46221 * 181.26191 * 14 13 12 16 16 N 1.46497 * 109.46743 * 64.92835 * 15 14 13 17 17 C 1.36939 * 119.99443 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00306 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99956 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99641 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00299 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47206 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47287 * 119.99812 * 21 19 17 24 24 H 1.48499 * 109.47299 * 240.00031 * 21 19 17 25 25 C 1.53044 * 109.54055 * 61.23926 * 14 13 12 26 26 C 1.46926 * 120.62416 * 179.97438 * 11 9 8 27 27 C 1.54269 * 110.03270 * 238.56604 * 2 1 3 28 28 H 1.09002 * 109.47153 * 300.05645 * 1 2 3 29 29 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47261 * 60.05817 * 1 2 3 31 31 H 1.08995 * 110.03570 * 238.57425 * 4 2 1 32 32 H 1.09001 * 110.02839 * 359.95032 * 4 2 1 33 33 H 1.09002 * 110.48891 * 142.29173 * 5 4 2 34 34 H 1.09003 * 110.48710 * 264.93202 * 5 4 2 35 35 H 1.09006 * 109.46844 * 53.54481 * 8 6 5 36 36 H 1.08997 * 109.47343 * 173.54145 * 8 6 5 37 37 H 1.09003 * 109.58363 * 353.41544 * 12 11 9 38 38 H 1.08992 * 109.58916 * 113.84252 * 12 11 9 39 39 H 1.08994 * 109.56390 * 185.55206 * 13 12 11 40 40 H 1.08995 * 109.38720 * 65.51060 * 13 12 11 41 41 H 1.09006 * 109.46152 * 301.22402 * 14 13 12 42 42 H 1.08996 * 109.47190 * 184.93092 * 15 14 13 43 43 H 1.09002 * 109.47019 * 304.93346 * 15 14 13 44 44 H 0.96997 * 120.00687 * 0.02562 * 16 15 14 45 45 H 0.97003 * 119.99698 * 180.02562 * 20 19 17 46 46 H 1.08993 * 109.50139 * 178.68155 * 25 14 13 47 47 H 1.09007 * 109.49107 * 58.58381 * 25 14 13 48 48 H 1.08998 * 109.58704 * 246.15596 * 26 11 9 49 49 H 1.08995 * 109.59086 * 6.58529 * 26 11 9 50 50 H 1.09000 * 110.48482 * 335.77919 * 27 2 1 51 51 H 1.08997 * 110.48904 * 98.42427 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0572 -0.7531 1.2339 5 6 2.8875 -1.9403 0.7042 6 6 3.3137 -1.5009 -0.7187 7 1 4.1730 -0.8318 -0.6752 8 6 3.6209 -2.7184 -1.5929 9 6 4.8419 -3.4236 -1.0609 10 8 5.4106 -2.9945 -0.0795 11 7 5.3023 -4.5307 -1.6765 12 6 4.6212 -5.0655 -2.8634 13 6 4.2946 -6.5391 -2.6278 14 6 5.5734 -7.2880 -2.2458 15 6 5.2541 -8.7701 -2.0401 16 7 4.8239 -9.3578 -3.3112 17 6 4.4830 -10.6827 -3.3723 18 1 4.5308 -11.2941 -2.4834 19 6 4.0759 -11.2398 -4.5768 20 7 4.0171 -10.4945 -5.6600 21 14 3.6101 -13.0468 -4.6600 22 1 3.7586 -13.6587 -3.3151 23 1 2.2001 -13.1745 -5.1083 24 1 4.5006 -13.7437 -5.6226 25 6 6.1408 -6.7041 -0.9499 26 6 6.4918 -5.2288 -1.1700 27 6 2.0584 -0.7559 -1.2367 28 1 -0.3633 0.5147 0.8895 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5129 -0.8905 31 1 2.6867 -0.0947 1.8324 32 1 1.2230 -1.1178 1.8333 33 1 3.7638 -2.1032 1.3316 34 1 2.2772 -2.8423 0.6581 35 1 2.7712 -3.4010 -1.5768 36 1 3.8062 -2.3932 -2.6166 37 1 3.6986 -4.5112 -3.0359 38 1 5.2734 -4.9729 -3.7317 39 1 3.8784 -6.9707 -3.5381 40 1 3.5681 -6.6240 -1.8197 41 1 6.3083 -7.1824 -3.0439 42 1 6.1446 -9.2875 -1.6835 43 1 4.4560 -8.8712 -1.3046 44 1 4.7806 -8.8086 -4.1096 45 1 3.7322 -10.8837 -6.5017 46 1 7.0385 -7.2531 -0.6659 47 1 5.3970 -6.7869 -0.1573 48 1 7.2994 -5.1498 -1.8976 49 1 6.8030 -4.7824 -0.2256 50 1 1.3143 -1.4665 -1.5961 51 1 2.3297 -0.0543 -2.0255 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205931160.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:54 Heat of formation + Delta-G solvation = -77.723896 kcal Electronic energy + Delta-G solvation = -25981.747697 eV Core-core repulsion = 22492.779461 eV Total energy + Delta-G solvation = -3488.968236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.36244 -39.59467 -38.58489 -36.52545 -34.50968 -33.65140 -32.35971 -31.87898 -30.44933 -28.66455 -27.67921 -25.65377 -24.92371 -24.24409 -23.18137 -21.68245 -20.87423 -20.56058 -19.74835 -19.13687 -17.98430 -17.20717 -16.74827 -16.55787 -16.35606 -15.65435 -15.51133 -15.33455 -15.20917 -14.93481 -14.85393 -14.27865 -14.09802 -14.00628 -13.88844 -13.68951 -13.51597 -13.12713 -13.00385 -12.91140 -12.79645 -12.77157 -12.21598 -12.12325 -11.96475 -11.90881 -11.72885 -11.67760 -11.59006 -11.47713 -11.41849 -11.39605 -11.31072 -11.23817 -10.93028 -10.61472 -9.61041 -8.97897 -7.95058 -5.22747 1.47846 1.47983 1.58053 1.67997 2.06140 2.56213 3.38570 3.48090 3.67116 3.75271 3.76900 3.82717 3.88240 3.99488 4.15532 4.26342 4.30108 4.34804 4.39821 4.43933 4.51932 4.59294 4.61408 4.69723 4.73490 4.74001 4.77675 4.82888 4.84780 4.87111 4.91120 4.97867 5.04425 5.06698 5.08233 5.14213 5.17661 5.18831 5.26104 5.31937 5.36631 5.45522 5.48154 5.54383 5.54795 5.62443 5.62694 6.28280 6.46692 7.22475 7.34994 8.10877 8.35563 9.28483 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.019837 B = 0.002511 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.178870 B =11148.162900 C =11923.554688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.072 0.928 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.073 4.073 7 H 0.067 0.933 8 C -0.130 4.130 9 C 0.510 3.490 10 O -0.580 6.580 11 N -0.611 5.611 12 C 0.112 3.888 13 C -0.120 4.120 14 C -0.084 4.084 15 C 0.157 3.843 16 N -0.741 5.741 17 C -0.245 4.245 18 H 0.071 0.929 19 C -0.073 4.073 20 N -0.966 5.966 21 Si 0.970 3.030 22 H -0.269 1.269 23 H -0.292 1.292 24 H -0.293 1.293 25 C -0.115 4.115 26 C 0.115 3.885 27 C -0.111 4.111 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.016 0.984 43 H 0.013 0.987 44 H 0.377 0.623 45 H 0.252 0.748 46 H 0.084 0.916 47 H 0.058 0.942 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.076 0.924 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.151 22.371 9.119 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.158 4.158 5 C -0.155 4.155 6 C -0.092 4.092 7 H 0.085 0.915 8 C -0.169 4.169 9 C 0.300 3.700 10 O -0.460 6.460 11 N -0.344 5.344 12 C -0.010 4.010 13 C -0.158 4.158 14 C -0.103 4.103 15 C 0.030 3.970 16 N -0.385 5.385 17 C -0.377 4.377 18 H 0.089 0.911 19 C -0.266 4.266 20 N -0.617 5.617 21 Si 0.800 3.200 22 H -0.194 1.194 23 H -0.219 1.219 24 H -0.220 1.220 25 C -0.154 4.154 26 C -0.008 4.008 27 C -0.148 4.148 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.034 0.966 43 H 0.031 0.969 44 H 0.209 0.791 45 H 0.061 0.939 46 H 0.102 0.898 47 H 0.077 0.923 48 H 0.095 0.905 49 H 0.100 0.900 50 H 0.094 0.906 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.878 22.426 9.725 24.613 hybrid contribution -0.075 -1.290 -0.405 1.354 sum -2.953 21.136 9.320 23.288 Atomic orbital electron populations 1.21870 0.94353 1.01824 1.01954 1.21737 0.96168 0.99269 0.94388 0.90972 1.22230 0.99137 0.96747 0.97706 1.22358 0.98739 0.97854 0.96517 1.21826 0.98077 0.95151 0.94183 0.91478 1.21806 0.95407 0.97802 1.01933 1.21264 0.86049 0.80014 0.82638 1.90639 1.60936 1.66565 1.27883 1.48295 1.29299 1.26796 1.30027 1.21792 0.98672 0.93716 0.86803 1.21741 0.97195 0.94911 1.01986 1.21184 0.97596 0.93423 0.98053 1.20812 0.95871 0.92440 0.87841 1.42549 1.80438 1.08066 1.07406 1.19638 1.35654 0.87756 0.94639 0.91125 1.25507 1.03383 1.02115 0.95549 1.69800 1.55663 1.36464 0.99788 0.85117 0.77042 0.80329 0.77537 1.19398 1.21904 1.21997 1.21811 1.01687 0.95146 0.96726 1.21557 0.87316 0.91417 1.00511 1.22504 0.96007 0.98966 0.97339 0.92574 0.92794 0.92073 0.92406 0.91595 0.93156 0.92463 0.87547 0.86679 0.87294 0.90215 0.91516 0.92389 0.91285 0.96584 0.96869 0.79059 0.93947 0.89778 0.92285 0.90537 0.89998 0.90564 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.84 71.98 0.64 -1.02 16 2 C -0.10 -1.31 3.50 -10.07 -0.04 -1.35 16 3 H 0.07 0.93 8.14 -2.38 -0.02 0.92 16 4 C -0.12 -1.97 6.46 31.32 0.20 -1.77 16 5 C -0.12 -2.34 5.59 31.67 0.18 -2.16 16 6 C -0.07 -1.29 2.49 -9.50 -0.02 -1.31 16 7 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 8 C -0.13 -2.17 3.56 29.85 0.11 -2.06 16 9 C 0.51 12.22 7.49 87.66 0.66 12.87 16 10 O -0.58 -17.86 13.94 -3.02 -0.04 -17.90 16 11 N -0.61 -13.96 2.98 -819.68 -2.44 -16.40 16 12 C 0.11 2.30 6.31 86.22 0.54 2.85 16 13 C -0.12 -3.30 5.23 30.53 0.16 -3.14 16 14 C -0.08 -2.50 2.19 -10.77 -0.02 -2.53 16 15 C 0.16 6.16 5.65 86.38 0.49 6.65 16 16 N -0.74 -36.87 5.32 -343.46 -1.83 -38.70 16 17 C -0.24 -13.62 9.99 84.03 0.84 -12.78 16 18 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 19 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 20 N -0.97 -57.93 13.06 21.65 0.28 -57.65 16 21 Si 0.97 45.79 29.55 68.60 2.03 47.81 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 25 C -0.12 -2.88 5.36 30.69 0.16 -2.71 16 26 C 0.11 2.68 6.44 86.37 0.56 3.24 16 27 C -0.11 -1.45 5.81 31.67 0.18 -1.27 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.01 7.67 -2.39 -0.02 0.99 16 33 H 0.05 1.27 7.06 -2.39 -0.02 1.25 16 34 H 0.06 1.15 8.01 -2.39 -0.02 1.13 16 35 H 0.11 1.55 7.64 -2.38 -0.02 1.53 16 36 H 0.12 1.42 7.95 -2.39 -0.02 1.40 16 37 H 0.11 1.68 5.93 -2.39 -0.01 1.67 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 2.16 7.15 -2.39 -0.02 2.14 16 40 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 42 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.38 19.52 6.84 -92.71 -0.63 18.88 16 45 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 46 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 48 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.08 2.08 7.00 -2.39 -0.02 2.06 16 50 H 0.08 0.92 7.76 -2.39 -0.02 0.90 16 51 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -66.85 387.76 3.34 -63.51 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: 0.24 Total: 29.50 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 5.10 Total: -10.18 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -3.98 Total: -112.74 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.04 Total: -17.90 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -66.85 3.34 -63.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205931160.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.215 kcal (2) G-P(sol) polarization free energy of solvation -66.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds