Wall clock time and date at job start Fri Apr 10 2020 22:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.50137 * 2 1 4 4 C 1.53197 * 109.49982 * 120.10067 * 2 1 3 5 5 N 1.46922 * 108.77778 * 174.58796 * 4 2 1 6 6 C 1.34774 * 120.63136 * 126.39141 * 5 4 2 7 7 O 1.21282 * 120.00042 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99870 * 179.97438 * 6 5 4 9 9 C 1.53008 * 117.49919 * 258.70020 * 8 6 5 10 10 C 1.52997 * 117.49488 * 0.02562 * 9 8 6 11 11 C 1.52999 * 117.49734 * 145.02094 * 9 8 6 12 12 C 1.53003 * 117.49961 * 190.07880 * 8 6 5 13 13 C 1.52995 * 117.49874 * 214.98184 * 12 8 6 14 14 C 1.53003 * 117.49702 * 0.02562 * 12 8 6 15 15 C 1.46937 * 118.73765 * 306.38883 * 5 4 2 16 16 C 1.53190 * 108.77187 * 53.61158 * 15 5 4 17 17 C 1.53037 * 109.31491 * 305.36256 * 16 15 5 18 18 H 1.09002 * 109.45469 * 181.38256 * 17 16 15 19 19 N 1.46501 * 109.46085 * 301.34941 * 17 16 15 20 20 C 1.36939 * 120.00314 * 275.06743 * 19 17 16 21 21 H 1.08004 * 119.99581 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00358 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99907 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00001 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46918 * 59.99949 * 24 22 20 26 26 H 1.48497 * 109.47268 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46859 * 300.00150 * 24 22 20 28 28 H 1.08996 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47525 * 300.06160 * 1 2 3 30 30 H 1.09004 * 109.47197 * 60.06335 * 1 2 3 31 31 H 1.09003 * 109.58034 * 294.37365 * 4 2 1 32 32 H 1.09006 * 109.58422 * 54.79433 * 4 2 1 33 33 H 1.09004 * 115.54940 * 44.40699 * 8 6 5 34 34 H 1.09001 * 109.47017 * 111.39330 * 10 9 8 35 35 H 1.09009 * 109.46699 * 231.38927 * 10 9 8 36 36 H 1.09001 * 109.47648 * 351.38768 * 10 9 8 37 37 H 1.09002 * 109.47380 * 8.61178 * 11 9 8 38 38 H 1.08998 * 109.46613 * 128.61101 * 11 9 8 39 39 H 1.08998 * 109.47015 * 248.60731 * 11 9 8 40 40 H 1.09000 * 109.47195 * 111.39061 * 13 12 8 41 41 H 1.09009 * 109.46842 * 231.38807 * 13 12 8 42 42 H 1.08998 * 109.47477 * 351.38352 * 13 12 8 43 43 H 1.09000 * 109.47496 * 54.55699 * 14 12 8 44 44 H 1.09001 * 109.47099 * 174.56069 * 14 12 8 45 45 H 1.08998 * 109.46915 * 294.56050 * 14 12 8 46 46 H 1.08998 * 109.58148 * 293.82201 * 15 5 4 47 47 H 1.09000 * 109.69972 * 173.46956 * 15 5 4 48 48 H 1.09006 * 109.49492 * 185.41453 * 16 15 5 49 49 H 1.09000 * 109.52568 * 65.33324 * 16 15 5 50 50 H 0.96998 * 120.00063 * 95.06604 * 19 17 16 51 51 H 0.97005 * 119.99519 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7242 1.2494 5 7 3.5045 -0.8295 1.1693 6 6 4.2810 -0.3867 2.1780 7 8 3.7731 0.1047 3.1636 8 6 5.7805 -0.5023 2.0812 9 6 6.4518 -1.6450 2.8457 10 6 5.5494 -2.5833 3.6494 11 6 7.6795 -2.2972 2.2065 12 6 6.5949 -0.2048 3.3418 13 6 7.9545 0.4730 3.1609 14 6 5.8245 0.1867 4.6045 15 6 4.1053 -1.4267 -0.0313 16 6 3.5708 -0.6946 -1.2662 17 6 2.0408 -0.7227 -1.2486 18 1 1.6583 -0.2236 -2.1390 19 7 1.5783 -2.1126 -1.2315 20 6 1.4481 -2.8055 -2.4055 21 1 1.6860 -2.3270 -3.3441 22 6 1.0104 -4.1227 -2.3892 23 7 0.7200 -4.7056 -1.2455 24 14 0.8321 -5.0675 -3.9908 25 1 2.1485 -5.1353 -4.6747 26 1 0.3517 -6.4429 -3.7034 27 1 -0.1461 -4.3751 -4.8677 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5148 0.8894 30 1 -0.3634 0.5129 -0.8906 31 1 1.7637 -0.1586 2.1388 32 1 1.6051 -1.7221 1.2975 33 1 6.2132 -0.2148 1.1229 34 1 5.5428 -3.5686 3.1834 35 1 5.9270 -2.6658 4.6687 36 1 4.5354 -2.1838 3.6689 37 1 7.9839 -1.7207 1.3330 38 1 8.4956 -2.3209 2.9287 39 1 7.4336 -3.3147 1.9027 40 1 7.9103 1.4875 3.5571 41 1 8.7168 -0.0932 3.6961 42 1 8.2051 0.5076 2.1007 43 1 5.0802 -0.5777 4.8277 44 1 6.5180 0.2739 5.4408 45 1 5.3264 1.1429 4.4443 46 1 3.8375 -2.4818 -0.0875 47 1 5.1898 -1.3268 0.0120 48 1 3.9334 -1.1890 -2.1675 49 1 3.9159 0.3393 -1.2545 50 1 1.3643 -2.5422 -0.3886 51 1 0.4137 -5.6259 -1.2342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035972777.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:58 Heat of formation + Delta-G solvation = -12.566349 kcal Electronic energy + Delta-G solvation = -27751.586053 eV Core-core repulsion = 24265.443260 eV Total energy + Delta-G solvation = -3486.142792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.72184 -38.81050 -37.01850 -34.21608 -32.81182 -31.39171 -31.15551 -29.15884 -28.72510 -28.37713 -26.25918 -26.11417 -24.84913 -23.46059 -21.87797 -21.56462 -18.95169 -17.95525 -17.85068 -17.34768 -16.74682 -15.51225 -15.40298 -14.82378 -14.60696 -14.36536 -13.96391 -13.88233 -13.67440 -13.54464 -13.22279 -12.82008 -12.72200 -12.55563 -12.46958 -12.39059 -12.24127 -12.17611 -11.87062 -11.78012 -11.74826 -11.47010 -11.34379 -11.14814 -10.89442 -10.77679 -10.76320 -10.47333 -10.39705 -10.22136 -9.82761 -9.71424 -9.58960 -9.54135 -9.08190 -8.91800 -8.13391 -6.97433 -5.79086 -3.07362 2.75804 3.29503 3.41348 3.46687 3.47292 3.69989 4.53609 4.57017 4.58942 4.62989 4.94597 5.05257 5.12636 5.29289 5.34177 5.39983 5.43360 5.51844 5.57303 5.61090 5.62208 5.64590 5.76503 5.80805 5.84933 5.86769 5.88427 5.89775 5.95977 6.00804 6.04883 6.08043 6.09491 6.13206 6.23887 6.27359 6.31054 6.34746 6.45220 6.52360 6.60586 6.67908 6.71211 6.79497 6.95882 7.05308 7.67745 7.82322 8.39481 8.52467 9.51043 10.08138 10.43415 11.43239 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.017327 B = 0.004093 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.574479 B = 6839.187931 C = 7575.253338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.064 0.936 4 C 0.120 3.880 5 N -0.597 5.597 6 C 0.545 3.455 7 O -0.550 6.550 8 C -0.176 4.176 9 C -0.095 4.095 10 C -0.121 4.121 11 C -0.115 4.115 12 C -0.091 4.091 13 C -0.113 4.113 14 C -0.104 4.104 15 C 0.117 3.883 16 C -0.151 4.151 17 C 0.179 3.821 18 H 0.049 0.951 19 N -0.718 5.718 20 C -0.238 4.238 21 H 0.068 0.932 22 C -0.011 4.011 23 N -0.932 5.932 24 Si 0.904 3.096 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.287 1.287 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.043 0.957 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.047 0.953 50 H 0.384 0.616 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.480 8.853 7.916 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.082 0.918 4 C -0.003 4.003 5 N -0.328 5.328 6 C 0.333 3.667 7 O -0.429 6.429 8 C -0.197 4.197 9 C -0.096 4.096 10 C -0.178 4.178 11 C -0.172 4.172 12 C -0.091 4.091 13 C -0.170 4.170 14 C -0.161 4.161 15 C -0.005 4.005 16 C -0.192 4.192 17 C 0.069 3.931 18 H 0.067 0.933 19 N -0.360 5.360 20 C -0.369 4.369 21 H 0.086 0.914 22 C -0.207 4.207 23 N -0.581 5.581 24 Si 0.735 3.265 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.214 1.214 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.137 0.863 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.101 0.899 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.065 0.935 50 H 0.219 0.781 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.170 9.019 8.252 17.249 hybrid contribution -0.169 -0.770 -1.031 1.298 sum 12.000 8.249 7.221 16.254 Atomic orbital electron populations 1.21663 0.94309 1.03143 1.00368 1.21695 0.96423 0.98793 0.95871 0.91755 1.21619 0.78815 1.01373 0.98455 1.48078 1.06859 1.59573 1.18277 1.19539 0.87507 0.77278 0.82363 1.90644 1.75307 1.45818 1.31121 1.22701 0.92209 1.06794 0.98021 1.21683 0.97883 0.89623 1.00391 1.21427 0.98852 0.98364 0.99140 1.21367 0.95354 1.00594 0.99838 1.21685 0.96176 0.96805 0.94482 1.21327 0.94059 1.00019 1.01613 1.21347 0.98348 1.03084 0.93326 1.21679 0.96455 0.98829 0.83572 1.22533 1.00494 0.98557 0.97587 1.20206 0.90789 0.87357 0.94794 0.93259 1.42461 1.78964 1.07704 1.06909 1.19175 1.37300 0.93879 0.86564 0.91361 1.24688 1.02278 0.97157 0.96545 1.69641 1.51642 1.13079 1.23697 0.86324 0.77739 0.79234 0.83191 1.21384 1.21806 1.21392 0.91063 0.93815 0.92873 0.89920 0.90822 0.86255 0.91878 0.91982 0.91758 0.92308 0.91970 0.91789 0.92098 0.91992 0.92462 0.91301 0.93775 0.91510 0.89898 0.91223 0.90873 0.93458 0.78089 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.05 37.15 0.34 -1.90 16 2 C -0.11 -1.80 2.67 -90.50 -0.24 -2.04 16 3 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.12 2.06 5.42 -3.71 -0.02 2.04 16 5 N -0.60 -9.78 2.97 -172.76 -0.51 -10.29 16 6 C 0.54 8.75 5.73 -10.99 -0.06 8.69 16 7 O -0.55 -9.99 12.29 5.56 0.07 -9.92 16 8 C -0.18 -2.30 4.09 -91.77 -0.38 -2.68 16 9 C -0.10 -1.11 2.70 -154.50 -0.42 -1.53 16 10 C -0.12 -1.52 8.21 37.16 0.31 -1.22 16 11 C -0.11 -1.10 8.88 37.16 0.33 -0.77 16 12 C -0.09 -1.06 2.70 -154.51 -0.42 -1.48 16 13 C -0.11 -1.04 8.87 37.15 0.33 -0.71 16 14 C -0.10 -1.32 7.82 37.16 0.29 -1.03 16 15 C 0.12 1.89 6.09 -3.71 -0.02 1.87 16 16 C -0.15 -2.50 5.78 -26.61 -0.15 -2.66 16 17 C 0.18 3.35 2.53 -67.89 -0.17 3.18 16 18 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 19 N -0.72 -16.48 3.64 -53.38 -0.19 -16.68 16 20 C -0.24 -6.19 9.93 -15.06 -0.15 -6.34 16 21 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 23 N -0.93 -26.97 13.06 55.49 0.72 -26.25 16 24 Si 0.90 21.71 29.55 -169.99 -5.02 16.68 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H 0.07 1.34 7.53 -51.93 -0.39 0.95 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.43 7.01 -51.93 -0.36 1.07 16 32 H 0.07 1.41 6.64 -51.93 -0.34 1.06 16 33 H 0.12 1.43 6.90 -51.93 -0.36 1.07 16 34 H 0.06 0.77 7.92 -51.93 -0.41 0.36 16 35 H 0.06 0.70 8.09 -51.92 -0.42 0.28 16 36 H 0.06 0.97 5.53 -51.93 -0.29 0.68 16 37 H 0.06 0.52 7.78 -51.93 -0.40 0.12 16 38 H 0.06 0.52 8.02 -51.93 -0.42 0.10 16 39 H 0.06 0.62 7.92 -51.93 -0.41 0.21 16 40 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 41 H 0.06 0.50 8.02 -51.92 -0.42 0.08 16 42 H 0.06 0.49 7.78 -51.93 -0.40 0.08 16 43 H 0.07 0.98 5.14 -51.93 -0.27 0.71 16 44 H 0.04 0.47 8.13 -51.93 -0.42 0.05 16 45 H 0.07 0.94 7.37 -51.93 -0.38 0.56 16 46 H 0.08 1.59 7.74 -51.93 -0.40 1.18 16 47 H 0.07 0.96 5.75 -51.93 -0.30 0.66 16 48 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 49 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.38 9.48 5.92 -40.82 -0.24 9.23 16 51 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -28.65 380.99 -8.87 -37.53 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -9.14 Total: 10.14 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -0.54 Total: -6.95 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.02 Total: -53.22 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.07 Total: -9.92 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.65 -8.87 -37.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035972777.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.961 kcal (2) G-P(sol) polarization free energy of solvation -28.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds