Wall clock time and date at job start Fri Apr 10 2020 22:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47411 * 2 1 4 4 C 1.53007 * 109.47136 * 119.99502 * 2 1 3 5 5 C 1.52995 * 109.47281 * 174.99792 * 4 2 1 6 6 H 1.09006 * 109.47139 * 55.00416 * 5 4 2 7 7 C 1.52997 * 109.47490 * 295.00365 * 5 4 2 8 8 C 1.50701 * 109.47245 * 175.00286 * 5 4 2 9 9 O 1.21287 * 119.99598 * 34.86755 * 8 5 4 10 10 N 1.34770 * 120.00158 * 214.87023 * 8 5 4 11 11 C 1.47215 * 126.70217 * 354.87939 * 10 8 5 12 12 C 1.53782 * 106.37784 * 211.23528 * 11 10 8 13 13 H 1.09007 * 111.85400 * 103.08426 * 12 11 10 14 14 C 1.53782 * 109.34878 * 228.51703 * 12 11 10 15 15 N 1.47219 * 106.37513 * 93.95750 * 14 12 11 16 16 C 1.36934 * 126.70220 * 211.27531 * 15 14 12 17 17 H 1.08002 * 120.00031 * 179.97438 * 16 15 14 18 18 C 1.38807 * 119.99976 * 0.02562 * 16 15 14 19 19 N 1.31617 * 120.00351 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99874 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46909 * 89.99848 * 20 18 16 22 22 H 1.48504 * 109.46902 * 209.99899 * 20 18 16 23 23 H 1.48498 * 109.47007 * 329.99730 * 20 18 16 24 24 C 1.47220 * 106.59384 * 31.27709 * 15 14 12 25 25 C 1.53779 * 106.37568 * 328.72290 * 24 15 14 26 26 C 1.53000 * 112.60372 * 141.04265 * 25 24 15 27 27 C 1.47220 * 126.70174 * 174.84080 * 10 8 5 28 28 H 1.09004 * 109.47131 * 300.00745 * 1 2 3 29 29 H 1.09002 * 109.46717 * 59.99742 * 1 2 3 30 30 H 1.08998 * 109.47417 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47463 * 239.99939 * 2 1 3 32 32 H 1.08996 * 109.47455 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.46720 * 299.99908 * 3 2 1 34 34 H 1.09001 * 109.46857 * 59.99567 * 3 2 1 35 35 H 1.09006 * 109.46424 * 55.00127 * 4 2 1 36 36 H 1.08997 * 109.47283 * 295.00127 * 4 2 1 37 37 H 1.09004 * 109.47308 * 65.25133 * 7 5 4 38 38 H 1.09002 * 109.47602 * 185.25078 * 7 5 4 39 39 H 1.09000 * 109.47187 * 305.25437 * 7 5 4 40 40 H 1.09002 * 110.07283 * 92.01183 * 11 10 8 41 41 H 1.08994 * 110.07557 * 330.46985 * 11 10 8 42 42 H 1.08993 * 110.07730 * 213.18549 * 14 12 11 43 43 H 1.09000 * 110.07176 * 334.73217 * 14 12 11 44 44 H 0.96998 * 120.00450 * 180.02562 * 19 18 16 45 45 H 1.08995 * 110.07221 * 209.50036 * 24 15 14 46 46 H 1.08990 * 110.12051 * 87.97809 * 24 15 14 47 47 H 1.09004 * 109.47127 * 301.55801 * 26 25 24 48 48 H 1.08998 * 109.47019 * 61.55816 * 26 25 24 49 49 H 1.08999 * 109.47056 * 181.55616 * 26 25 24 50 50 H 1.08996 * 110.07067 * 267.99105 * 27 10 8 51 51 H 1.08998 * 110.07435 * 29.53240 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5647 -0.8310 1.1881 6 1 3.9954 0.1612 1.0528 7 6 3.9649 -1.7252 0.0129 8 6 4.0772 -1.4302 2.4724 9 8 3.4269 -2.2764 3.0486 10 7 5.2581 -1.0257 2.9807 11 6 6.2114 -0.0934 2.3568 12 6 7.6112 -0.5294 2.8209 13 1 8.1467 -1.0712 2.0412 14 6 8.3861 0.6991 3.3260 15 7 8.1729 0.7546 4.7816 16 6 8.1253 1.8807 5.5594 17 1 7.9614 1.7955 6.6235 18 6 8.2866 3.1317 4.9800 19 7 8.4859 3.2356 3.6832 20 14 8.2210 4.6678 6.0409 21 1 9.5860 4.9918 6.5278 22 1 7.6997 5.8026 5.2372 23 1 7.3250 4.4302 7.2011 24 6 8.0209 -0.6369 5.2377 25 6 7.3716 -1.4058 4.0750 26 6 7.9463 -2.8138 3.9074 27 6 5.8462 -1.4292 4.2685 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6053 -1.7198 1.2952 36 1 1.7516 -0.1582 2.1370 37 1 3.6764 -1.2462 -0.9228 38 1 5.0439 -1.8794 0.0245 39 1 3.4595 -2.6870 0.0996 40 1 6.0085 0.9255 2.6866 41 1 6.1406 -0.1568 1.2710 42 1 9.4481 0.5874 3.1075 43 1 8.0001 1.6039 2.8565 44 1 8.5990 4.1098 3.2783 45 1 7.3773 -0.6743 6.1166 46 1 8.9963 -1.0639 5.4702 47 1 9.0210 -2.7497 3.7369 48 1 7.7556 -3.3938 4.8103 49 1 7.4716 -3.3009 3.0557 50 1 5.5572 -0.7251 5.0487 51 1 5.5178 -2.4349 4.5311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101407378.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:08 Heat of formation + Delta-G solvation = -31.872494 kcal Electronic energy + Delta-G solvation = -27425.891399 eV Core-core repulsion = 23938.911430 eV Total energy + Delta-G solvation = -3486.979970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.32691 -38.73199 -36.78643 -34.87638 -33.08942 -32.36049 -30.81802 -29.95851 -27.26542 -26.77670 -26.66562 -25.82598 -25.14605 -23.33233 -22.16408 -20.16891 -19.80290 -18.87828 -18.35604 -17.02225 -16.62732 -15.67670 -15.47711 -15.07380 -14.70919 -14.44183 -14.04828 -13.98594 -13.56771 -13.51119 -13.19426 -13.09301 -12.78514 -12.41884 -12.37960 -12.33624 -12.11460 -11.99289 -11.69110 -11.63914 -11.51710 -11.33875 -11.28513 -10.93210 -10.86679 -10.76379 -10.73153 -10.58559 -10.53809 -10.15462 -10.12895 -9.91209 -9.79200 -9.59307 -9.39123 -8.75199 -8.25939 -6.93279 -5.70737 -3.15010 2.89783 3.32195 3.36444 3.42075 3.43142 4.43500 4.55879 4.67075 4.78471 4.88958 5.01049 5.08877 5.11111 5.21392 5.24845 5.38686 5.44255 5.50798 5.54628 5.57813 5.65019 5.67991 5.71716 5.73899 5.79087 5.82414 5.83114 5.93063 5.94114 6.00101 6.05487 6.07607 6.12311 6.18224 6.28701 6.31228 6.32671 6.35084 6.36369 6.47535 6.53527 6.75390 6.77279 6.90230 7.35172 7.55694 7.75813 7.93428 8.32566 8.46079 9.15094 9.75604 10.42885 11.30810 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.004372 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.014670 B = 6402.188389 C = 7766.339543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.152 4.152 4 C -0.096 4.096 5 C -0.109 4.109 6 H 0.093 0.907 7 C -0.139 4.139 8 C 0.533 3.467 9 O -0.556 6.556 10 N -0.611 5.611 11 C 0.112 3.888 12 C -0.115 4.115 13 H 0.077 0.923 14 C 0.141 3.859 15 N -0.595 5.595 16 C -0.217 4.217 17 H 0.079 0.921 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.915 3.085 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.145 3.855 25 C -0.089 4.089 26 C -0.123 4.123 27 C 0.123 3.877 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.009 0.991 43 H 0.128 0.872 44 H 0.253 0.747 45 H 0.044 0.956 46 H 0.022 0.978 47 H 0.057 0.943 48 H 0.053 0.947 49 H 0.050 0.950 50 H 0.070 0.930 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.747 -7.911 -8.792 14.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.209 4.209 4 C -0.134 4.134 5 C -0.130 4.130 6 H 0.111 0.889 7 C -0.196 4.196 8 C 0.322 3.678 9 O -0.435 6.435 10 N -0.343 5.343 11 C -0.011 4.011 12 C -0.135 4.135 13 H 0.095 0.905 14 C 0.016 3.984 15 N -0.318 5.318 16 C -0.345 4.345 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.571 5.571 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.017 3.983 25 C -0.091 4.091 26 C -0.181 4.181 27 C 0.000 4.000 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.027 0.973 43 H 0.145 0.855 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.039 0.961 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.088 0.912 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.172 -8.108 -8.506 14.907 hybrid contribution 0.185 0.837 0.570 1.029 sum -8.987 -7.271 -7.936 14.022 Atomic orbital electron populations 1.21826 0.95289 1.01620 1.01642 1.21171 0.95632 0.96454 0.98351 1.21926 1.01468 0.95810 1.01717 1.21493 0.92565 1.01416 0.97879 1.21330 0.97641 1.00889 0.93147 0.88878 1.21734 1.01653 0.99542 0.96697 1.20287 0.79499 0.81742 0.86228 1.90646 1.57324 1.32967 1.62516 1.48665 1.18904 1.45751 1.21009 1.22309 0.88051 0.93878 0.96813 1.23049 0.95593 0.98788 0.96118 0.90473 1.21970 0.95290 0.96146 0.85040 1.44490 1.83829 0.99713 1.03782 1.19094 1.41531 0.83279 0.90643 0.90363 1.24736 1.02227 0.97468 0.96116 1.69570 1.56408 1.22370 1.08771 0.86067 0.77683 0.82679 0.79060 1.21617 1.21632 1.20718 1.21369 0.96710 0.86333 0.93839 1.22170 0.94042 0.95282 0.97585 1.21643 1.00598 0.94818 1.01041 1.22091 0.91978 1.00244 0.85662 0.92705 0.92821 0.92758 0.90909 0.92216 0.92855 0.92593 0.90931 0.91759 0.91384 0.92318 0.92016 0.90006 0.91691 0.97296 0.85485 0.93618 0.93809 0.96079 0.92348 0.92794 0.93106 0.91191 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.19 37.15 0.34 -0.94 16 2 C -0.10 -0.94 2.78 -90.62 -0.25 -1.19 16 3 C -0.15 -1.48 8.96 37.16 0.33 -1.15 16 4 C -0.10 -1.15 3.73 -26.73 -0.10 -1.25 16 5 C -0.11 -1.40 2.00 -91.78 -0.18 -1.58 16 6 H 0.09 1.17 5.28 -51.93 -0.27 0.89 16 7 C -0.14 -1.51 8.80 37.16 0.33 -1.18 16 8 C 0.53 8.93 6.87 -10.99 -0.08 8.85 16 9 O -0.56 -10.95 16.58 5.55 0.09 -10.85 16 10 N -0.61 -10.43 3.32 -171.58 -0.57 -11.00 16 11 C 0.11 1.88 5.88 -3.24 -0.02 1.86 16 12 C -0.11 -2.04 3.68 -88.83 -0.33 -2.37 16 13 H 0.08 1.24 7.88 -51.93 -0.41 0.83 16 14 C 0.14 3.18 5.57 -3.24 -0.02 3.16 16 15 N -0.59 -14.37 3.39 -171.13 -0.58 -14.95 16 16 C -0.22 -5.79 10.34 -15.06 -0.16 -5.94 16 17 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -25.35 10.08 55.49 0.56 -24.79 16 20 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.14 2.90 6.22 -3.24 -0.02 2.87 16 25 C -0.09 -1.52 1.09 -152.72 -0.17 -1.68 16 26 C -0.12 -1.77 8.49 37.16 0.32 -1.45 16 27 C 0.12 2.17 6.15 -3.24 -0.02 2.15 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.65 6.46 -51.93 -0.34 0.31 16 32 H 0.06 0.60 6.46 -51.93 -0.34 0.27 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.92 8.02 -51.93 -0.42 0.50 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.60 6.72 -51.93 -0.35 0.25 16 38 H 0.06 0.65 8.11 -51.93 -0.42 0.22 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 1.59 7.39 -51.93 -0.38 1.21 16 41 H 0.06 0.92 7.34 -51.93 -0.38 0.54 16 42 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 43 H 0.13 3.18 4.81 -51.93 -0.25 2.93 16 44 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 45 H 0.04 0.86 7.51 -51.93 -0.39 0.47 16 46 H 0.02 0.42 7.90 -51.93 -0.41 0.01 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.07 1.35 7.39 -51.93 -0.38 0.97 16 51 H 0.07 1.20 7.56 -51.93 -0.39 0.81 16 LS Contribution 384.01 15.07 5.79 5.79 Total: -1.00 -29.36 384.01 -9.18 -38.54 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -9.33 Total: 1.10 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -0.12 Total: -0.22 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.59 Total: -50.75 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.36 -9.18 -38.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101407378.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.671 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds