Wall clock time and date at job start Fri Apr 10 2020 22:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 110.91143 * 2 1 4 4 C 1.55126 * 111.15833 * 236.07291 * 2 1 3 5 5 N 1.47434 * 104.93702 * 205.13025 * 4 2 1 6 6 C 1.36929 * 125.64397 * 203.96694 * 5 4 2 7 7 H 1.08006 * 120.00246 * 180.02562 * 6 5 4 8 8 C 1.38817 * 120.00589 * 0.04381 * 6 5 4 9 9 N 1.31625 * 119.99627 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00318 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47316 * 89.99828 * 10 8 6 12 12 H 1.48499 * 109.47213 * 209.99999 * 10 8 6 13 13 H 1.48503 * 109.47370 * 330.00030 * 10 8 6 14 14 C 1.47013 * 108.70154 * 24.00588 * 5 4 2 15 15 C 1.54323 * 107.27508 * 358.93882 * 14 5 4 16 16 H 1.08993 * 110.71765 * 96.35039 * 15 14 5 17 17 C 1.53004 * 110.71833 * 219.44304 * 15 14 5 18 18 N 1.46495 * 109.47508 * 291.15521 * 17 15 14 19 19 C 1.34769 * 120.00388 * 179.97438 * 18 17 15 20 20 O 1.21285 * 119.99908 * 0.02562 * 19 18 17 21 21 C 1.50704 * 120.00430 * 179.97438 * 19 18 17 22 22 C 1.52997 * 109.47147 * 180.02562 * 21 19 18 23 23 C 1.52997 * 109.47582 * 60.00186 * 22 21 19 24 24 C 1.53005 * 109.47083 * 299.99945 * 22 21 19 25 25 C 1.53003 * 109.46999 * 180.02562 * 22 21 19 26 26 C 1.53001 * 117.51964 * 111.28362 * 25 22 21 27 27 C 1.52999 * 60.00190 * 107.47982 * 26 25 22 28 28 H 1.08998 * 109.46942 * 296.09672 * 1 2 3 29 29 H 1.08997 * 109.46990 * 56.09738 * 1 2 3 30 30 H 1.09002 * 109.46862 * 176.09795 * 1 2 3 31 31 H 1.09000 * 110.41744 * 86.20865 * 4 2 1 32 32 H 1.08993 * 110.30231 * 323.99800 * 4 2 1 33 33 H 0.96994 * 119.99740 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.88161 * 239.52095 * 14 5 4 35 35 H 1.09003 * 109.88394 * 118.35821 * 14 5 4 36 36 H 1.09010 * 109.46971 * 171.15530 * 17 15 14 37 37 H 1.09003 * 109.47066 * 51.16333 * 17 15 14 38 38 H 0.97001 * 119.99792 * 0.02562 * 18 17 15 39 39 H 1.09000 * 109.46634 * 60.00494 * 21 19 18 40 40 H 1.08996 * 109.46811 * 300.00356 * 21 19 18 41 41 H 1.08996 * 109.47501 * 179.97438 * 23 22 21 42 42 H 1.09004 * 109.47169 * 300.00278 * 23 22 21 43 43 H 1.09005 * 109.46926 * 59.99406 * 23 22 21 44 44 H 1.08997 * 109.47548 * 299.99808 * 24 22 21 45 45 H 1.08996 * 109.46727 * 60.00688 * 24 22 21 46 46 H 1.09002 * 109.47133 * 180.02562 * 24 22 21 47 47 H 1.09002 * 115.54973 * 325.58146 * 25 22 21 48 48 H 1.09001 * 117.49733 * 214.97413 * 26 25 22 49 49 H 1.08995 * 117.49577 * 359.97438 * 26 25 22 50 50 H 1.09004 * 117.50150 * 252.51496 * 27 26 25 51 51 H 1.09004 * 117.49681 * 107.48417 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0900 -0.8074 -1.2004 5 7 3.4299 -1.2474 -0.7705 6 6 4.4675 -1.5741 -1.6022 7 1 5.4144 -1.8868 -1.1873 8 6 4.3026 -1.5031 -2.9788 9 7 3.1489 -1.1213 -3.4845 10 14 5.7182 -1.9482 -4.1133 11 1 5.6613 -3.3977 -4.4308 12 1 5.6125 -1.1619 -5.3686 13 1 7.0064 -1.6387 -3.4424 14 6 3.4672 -1.2781 0.6988 15 6 2.0862 -0.8079 1.2021 16 1 1.4452 -1.6614 1.4228 17 6 2.2351 0.0876 2.4338 18 7 2.7030 -0.7143 3.5670 19 6 2.9074 -0.1327 4.7654 20 8 2.7035 1.0546 4.9059 21 6 3.3882 -0.9577 5.9313 22 6 3.5372 -0.0621 7.1628 23 6 2.1838 0.5640 7.5049 24 6 4.5515 1.0449 6.8686 25 6 4.0259 -0.8996 8.3463 26 6 5.4450 -0.6417 8.8567 27 6 4.2405 -0.1807 9.6798 28 1 -0.3633 0.4521 0.9229 29 1 -0.3633 0.5732 -0.8529 30 1 -0.3633 -1.0253 -0.0699 31 1 2.1643 -0.1732 -2.0838 32 1 1.4553 -1.6695 -1.4053 33 1 3.0338 -1.0713 -4.4463 34 1 4.2434 -0.6057 1.0641 35 1 3.6613 -2.2938 1.0436 36 1 1.2706 0.5332 2.6777 37 1 2.9572 0.8766 2.2241 38 1 2.8664 -1.6638 3.4545 39 1 4.3522 -1.4040 5.6874 40 1 2.6654 -1.7461 6.1410 41 1 2.2898 1.2016 8.3825 42 1 1.8359 1.1607 6.6616 43 1 1.4611 -0.2247 7.7144 44 1 5.5158 0.5989 6.6250 45 1 4.2037 1.6417 6.0255 46 1 4.6580 1.6827 7.7461 47 1 3.6572 -1.9248 8.3808 48 1 6.0100 -1.4972 9.2270 49 1 6.0309 0.1245 8.3491 50 1 4.0337 0.8890 9.7137 51 1 4.0129 -0.7330 10.5915 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101944410.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:17 Heat of formation + Delta-G solvation = -20.476483 kcal Electronic energy + Delta-G solvation = -26166.848071 eV Core-core repulsion = 22680.362270 eV Total energy + Delta-G solvation = -3486.485801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29979 -39.86232 -38.97793 -36.06739 -34.65943 -34.38280 -32.55936 -31.10728 -28.92395 -28.22875 -27.73682 -26.46405 -24.73617 -23.92476 -23.00999 -21.83763 -21.38162 -20.63394 -19.26751 -18.86729 -17.94306 -17.34197 -16.79422 -16.57656 -16.41065 -15.99705 -15.62120 -15.40897 -14.92057 -14.72735 -14.51109 -14.29425 -14.21310 -14.01793 -13.51482 -13.40877 -13.24619 -13.11077 -12.78312 -12.74159 -12.65023 -12.45595 -12.44680 -12.16697 -11.97393 -11.96669 -11.85409 -11.80166 -11.65160 -11.55208 -11.39476 -11.17482 -11.08985 -10.74542 -10.69918 -10.36064 -9.94104 -8.87697 -7.77228 -5.21595 1.45951 1.47648 1.56354 1.76015 2.29287 2.49243 2.98875 3.31903 3.63236 3.70864 3.76200 3.82686 3.92160 3.98789 4.03960 4.14646 4.26830 4.32745 4.39021 4.43660 4.50967 4.63508 4.64383 4.71800 4.75774 4.82865 4.83338 4.86979 4.88896 4.91115 4.98583 5.06291 5.10416 5.14742 5.16177 5.19258 5.21968 5.34594 5.36739 5.40533 5.43996 5.47776 5.51401 5.57502 5.71993 5.73404 5.85307 6.32209 6.66684 7.11412 7.39045 7.79383 8.43035 9.24294 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.020878 B = 0.002677 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.783605 B =10456.324220 C =11445.745182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.063 0.937 4 C 0.162 3.838 5 N -0.630 5.630 6 C -0.238 4.238 7 H 0.079 0.921 8 C -0.069 4.069 9 N -0.949 5.949 10 Si 0.979 3.021 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.270 1.270 14 C 0.139 3.861 15 C -0.088 4.088 16 H 0.094 0.906 17 C 0.147 3.853 18 N -0.722 5.722 19 C 0.508 3.492 20 O -0.568 6.568 21 C -0.126 4.126 22 C -0.012 4.012 23 C -0.146 4.146 24 C -0.153 4.153 25 C -0.144 4.144 26 C -0.186 4.186 27 C -0.179 4.179 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.067 0.933 32 H -0.010 1.010 33 H 0.247 0.753 34 H 0.019 0.981 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.412 0.588 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.116 0.884 48 H 0.100 0.900 49 H 0.094 0.906 50 H 0.087 0.913 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 -0.902 24.300 24.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.122 4.122 3 H 0.082 0.918 4 C 0.037 3.963 5 N -0.355 5.355 6 C -0.367 4.367 7 H 0.097 0.903 8 C -0.261 4.261 9 N -0.598 5.598 10 Si 0.808 3.192 11 H -0.212 1.212 12 H -0.220 1.220 13 H -0.195 1.195 14 C 0.014 3.986 15 C -0.108 4.108 16 H 0.113 0.887 17 C 0.022 3.978 18 N -0.373 5.373 19 C 0.297 3.703 20 O -0.448 6.448 21 C -0.166 4.166 22 C -0.013 4.013 23 C -0.203 4.203 24 C -0.210 4.210 25 C -0.162 4.162 26 C -0.223 4.223 27 C -0.216 4.216 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.008 0.992 33 H 0.056 0.944 34 H 0.037 0.963 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.248 0.752 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.134 0.866 48 H 0.119 0.881 49 H 0.113 0.887 50 H 0.105 0.895 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.087 -0.075 24.189 24.279 hybrid contribution 0.840 -0.565 -1.241 1.602 sum -1.247 -0.641 22.948 22.990 Atomic orbital electron populations 1.21593 0.92761 1.01936 1.02124 1.22467 0.96716 0.98281 0.94715 0.91819 1.21794 0.83762 0.94894 0.95861 1.44818 1.10635 1.78861 1.01219 1.19443 0.92044 1.37166 0.88081 0.90275 1.25637 0.99775 1.02548 0.98138 1.70064 1.24299 1.54787 1.10689 0.85061 0.78766 0.77328 0.78084 1.21245 1.22035 1.19532 1.21497 0.95645 0.97581 0.83918 1.22319 0.96318 0.98545 0.93579 0.88733 1.21105 0.99376 0.93074 0.84221 1.46062 1.68082 1.13473 1.09721 1.21194 0.76501 0.88276 0.84360 1.90581 1.52694 1.17493 1.84042 1.21787 1.04393 0.98759 0.91620 1.19709 0.95725 0.93868 0.91989 1.22001 0.95960 1.00741 1.01620 1.22165 0.98282 0.98650 1.01904 1.22334 0.99635 1.00075 0.94151 1.23187 0.91118 1.03917 1.04095 1.22962 1.02938 1.00727 0.94931 0.90815 0.92800 0.92669 0.91465 0.99176 0.94374 0.96329 0.95308 0.90930 0.93476 0.75232 0.87412 0.86569 0.93044 0.92147 0.92539 0.92675 0.92275 0.92971 0.86591 0.88148 0.88721 0.89453 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.32 71.99 0.67 -2.97 16 2 C -0.10 -3.66 3.10 -9.33 -0.03 -3.69 16 3 H 0.06 2.39 8.05 -2.39 -0.02 2.37 16 4 C 0.16 7.91 5.37 86.93 0.47 8.38 16 5 N -0.63 -32.33 3.40 -691.55 -2.35 -34.68 16 6 C -0.24 -13.41 10.27 84.04 0.86 -12.55 16 7 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 8 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 9 N -0.95 -56.82 10.09 21.65 0.22 -56.60 16 10 Si 0.98 45.84 29.55 68.60 2.03 47.87 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 14 C 0.14 5.46 6.64 86.73 0.58 6.04 16 15 C -0.09 -2.75 2.45 -9.61 -0.02 -2.77 16 16 H 0.09 2.64 8.04 -2.39 -0.02 2.62 16 17 C 0.15 3.99 5.00 86.38 0.43 4.42 16 18 N -0.72 -16.05 5.43 -463.05 -2.51 -18.57 16 19 C 0.51 11.72 7.24 87.66 0.63 12.36 16 20 O -0.57 -17.08 11.35 -3.05 -0.03 -17.11 16 21 C -0.13 -1.99 4.75 29.85 0.14 -1.85 16 22 C -0.01 -0.21 0.62 -52.18 -0.03 -0.25 16 23 C -0.15 -2.80 8.02 71.98 0.58 -2.22 16 24 C -0.15 -3.13 6.77 71.98 0.49 -2.64 16 25 C -0.14 -1.94 5.15 -10.79 -0.06 -2.00 16 26 C -0.19 -2.45 9.57 30.59 0.29 -2.16 16 27 C -0.18 -2.33 9.38 30.60 0.29 -2.05 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.56 8.08 -2.39 -0.02 1.54 16 31 H 0.07 3.82 5.87 -2.39 -0.01 3.80 16 32 H -0.01 -0.51 7.99 -2.39 -0.02 -0.53 16 33 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 34 H 0.02 0.76 7.73 -2.39 -0.02 0.74 16 35 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.05 1.50 8.00 -2.39 -0.02 1.48 16 38 H 0.41 7.33 8.40 -92.71 -0.78 6.55 16 39 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.05 0.94 7.29 -2.39 -0.02 0.92 16 42 H 0.06 1.50 5.51 -2.39 -0.01 1.48 16 43 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.05 1.04 6.97 -2.39 -0.02 1.03 16 45 H 0.06 1.57 5.51 -2.39 -0.01 1.55 16 46 H 0.05 1.00 7.07 -2.39 -0.02 0.99 16 47 H 0.12 1.27 8.11 -2.39 -0.02 1.25 16 48 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.09 1.37 5.85 -2.39 -0.01 1.36 16 50 H 0.09 1.25 7.07 -2.39 -0.02 1.24 16 51 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -68.35 385.23 3.22 -65.13 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.12 Total: 21.36 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 5.76 Total: -7.39 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -4.64 Total: -109.85 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.03 Total: -17.11 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -68.35 3.22 -65.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101944410.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.652 kcal (2) G-P(sol) polarization free energy of solvation -68.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds