Wall clock time and date at job start Fri Apr 10 2020 22:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.63684 * 2 1 4 4 C 1.54332 * 111.00423 * 236.91729 * 2 1 3 5 5 N 1.47014 * 107.26884 * 219.60091 * 4 2 1 6 6 C 1.36936 * 125.65416 * 178.84951 * 5 4 2 7 7 H 1.07991 * 120.00330 * 174.34296 * 6 5 4 8 8 C 1.38808 * 119.99387 * 354.06819 * 6 5 4 9 9 N 1.31615 * 120.00397 * 7.48085 * 8 6 5 10 10 Si 1.86799 * 119.99965 * 187.47537 * 8 6 5 11 11 H 1.48500 * 109.47264 * 94.98196 * 10 8 6 12 12 H 1.48501 * 109.47359 * 214.98252 * 10 8 6 13 13 H 1.48505 * 109.46980 * 334.98304 * 10 8 6 14 14 C 1.47432 * 108.70028 * 358.58767 * 5 4 2 15 15 C 1.54912 * 104.83381 * 24.35485 * 14 5 4 16 16 H 1.09008 * 111.00157 * 81.09649 * 15 14 5 17 17 C 1.52995 * 111.00561 * 204.91684 * 15 14 5 18 18 N 1.46506 * 109.46965 * 293.54471 * 17 15 14 19 19 C 1.34775 * 120.00077 * 180.02562 * 18 17 15 20 20 O 1.21282 * 119.99795 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.00017 * 180.02562 * 19 18 17 22 22 C 1.52997 * 109.47016 * 299.99739 * 21 19 18 23 23 C 1.52991 * 109.47206 * 59.99946 * 21 19 18 24 24 C 1.53002 * 109.46730 * 179.97438 * 21 19 18 25 25 C 1.53783 * 113.61140 * 280.26769 * 24 21 19 26 26 C 1.53961 * 87.01866 * 220.04941 * 25 24 21 27 27 C 1.53784 * 87.11018 * 25.36538 * 26 25 24 28 28 H 1.08995 * 109.47447 * 296.86152 * 1 2 3 29 29 H 1.09004 * 109.46811 * 56.86664 * 1 2 3 30 30 H 1.09003 * 109.46853 * 176.85869 * 1 2 3 31 31 H 1.09006 * 109.99063 * 100.12540 * 4 2 1 32 32 H 1.08997 * 109.77831 * 338.96636 * 4 2 1 33 33 H 0.97004 * 120.00695 * 179.97438 * 9 8 6 34 34 H 1.09003 * 110.36546 * 143.19481 * 14 5 4 35 35 H 1.08992 * 110.36840 * 265.40746 * 14 5 4 36 36 H 1.08995 * 109.47274 * 53.54564 * 17 15 14 37 37 H 1.08997 * 109.46869 * 173.54660 * 17 15 14 38 38 H 0.97000 * 119.99967 * 359.97438 * 18 17 15 39 39 H 1.08994 * 109.47176 * 59.99939 * 22 21 19 40 40 H 1.09005 * 109.47108 * 180.02562 * 22 21 19 41 41 H 1.09005 * 109.47220 * 300.00111 * 22 21 19 42 42 H 1.09003 * 109.47605 * 53.33418 * 23 21 19 43 43 H 1.08997 * 109.47594 * 173.33666 * 23 21 19 44 44 H 1.09004 * 109.47498 * 293.33621 * 23 21 19 45 45 H 1.08995 * 112.85170 * 51.46375 * 24 21 19 46 46 H 1.08997 * 113.61983 * 334.56651 * 25 24 21 47 47 H 1.08997 * 113.61413 * 105.47936 * 25 24 21 48 48 H 1.08993 * 113.53918 * 270.81083 * 26 25 24 49 49 H 1.09003 * 113.74209 * 139.94439 * 26 25 24 50 50 H 1.08995 * 113.61196 * 220.08960 * 27 26 25 51 51 H 1.08999 * 113.61567 * 89.18190 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0832 -0.7864 -1.2072 5 7 3.2495 -1.5470 -0.7352 6 6 4.0126 -2.3919 -1.4961 7 1 4.9052 -2.8354 -1.0804 8 6 3.6357 -2.6827 -2.8000 9 7 2.6321 -2.0366 -3.3547 10 14 4.5530 -3.9909 -3.7677 11 1 3.8388 -5.2874 -3.6477 12 1 4.6204 -3.5934 -5.1969 13 1 5.9292 -4.1321 -3.2277 14 6 3.4652 -1.2446 0.6915 15 6 2.0789 -0.7933 1.2153 16 1 1.4470 -1.6529 1.4390 17 6 2.2235 0.1113 2.4407 18 7 2.7733 -0.6624 3.5567 19 6 2.9879 -0.0686 4.7473 20 8 2.7263 1.1064 4.8948 21 6 3.5539 -0.8644 5.8951 22 6 2.6122 -2.0242 6.2249 23 6 4.9262 -1.4168 5.5050 24 6 3.6984 0.0402 7.1206 25 6 4.9491 0.9342 7.0822 26 6 5.1055 0.6422 8.5857 27 6 4.3309 -0.6622 8.3336 28 1 -0.3634 0.4643 0.9167 29 1 -0.3633 0.5617 -0.8606 30 1 -0.3633 -1.0262 -0.0563 31 1 2.3849 -0.0962 -1.9951 32 1 1.3217 -1.4701 -1.5823 33 1 2.3689 -2.2396 -4.2660 34 1 3.7993 -2.1363 1.2220 35 1 4.1943 -0.4422 0.8032 36 1 2.8949 0.9371 2.2055 37 1 1.2461 0.5056 2.7185 38 1 2.9821 -1.6023 3.4388 39 1 2.5096 -2.6685 5.3518 40 1 3.0214 -2.5996 7.0554 41 1 1.6344 -1.6306 6.5029 42 1 5.5605 -0.6015 5.1568 43 1 5.3869 -1.8908 6.3716 44 1 4.8091 -2.1516 4.7084 45 1 2.7823 0.5810 7.3579 46 1 5.7567 0.5293 6.4725 47 1 4.7323 1.9790 6.8598 48 1 4.5748 1.3487 9.2239 49 1 6.1380 0.4837 8.8969 50 1 3.6159 -0.9043 9.1198 51 1 4.9693 -1.5044 8.0665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102196127.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:23 Heat of formation + Delta-G solvation = -12.716325 kcal Electronic energy + Delta-G solvation = -26660.036400 eV Core-core repulsion = 23173.887104 eV Total energy + Delta-G solvation = -3486.149296 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.74488 -38.73048 -37.78314 -34.72084 -34.08287 -32.80702 -30.73392 -29.17274 -27.78860 -26.04492 -25.91096 -25.45714 -25.14922 -23.32220 -22.20334 -20.25760 -19.95672 -19.24105 -18.46125 -17.13179 -16.72846 -16.18494 -15.60818 -15.22242 -15.07622 -14.76151 -14.35113 -13.95438 -13.75154 -13.56876 -13.20879 -12.96563 -12.93193 -12.80939 -12.53224 -12.38657 -12.05421 -11.86244 -11.80575 -11.64683 -11.52643 -11.37118 -11.31929 -11.21253 -10.81300 -10.78988 -10.53342 -10.45605 -10.23458 -10.15715 -9.99371 -9.94813 -9.85298 -9.62103 -9.38186 -8.87291 -8.58385 -6.83288 -5.73382 -3.05645 2.75981 3.28253 3.38799 3.44026 3.46205 4.34705 4.43021 4.46005 4.48692 4.67088 4.76489 4.86220 5.03856 5.07745 5.16755 5.24100 5.33185 5.34688 5.48671 5.51863 5.52457 5.53988 5.56947 5.63526 5.68430 5.74317 5.77704 5.79082 5.88368 5.89655 5.96663 6.03596 6.04839 6.11511 6.16131 6.19679 6.29097 6.39456 6.48737 6.53046 6.57534 6.63288 6.77572 6.95024 7.55693 7.64040 7.65001 7.83102 8.25297 8.34549 9.20949 9.81654 10.48497 11.38613 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.020171 B = 0.003020 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.787299 B = 9267.806778 C =10120.294125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.066 0.934 4 C 0.183 3.817 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.077 0.923 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.909 3.091 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.143 3.857 15 C -0.112 4.112 16 H 0.079 0.921 17 C 0.133 3.867 18 N -0.723 5.723 19 C 0.521 3.479 20 O -0.543 6.543 21 C -0.073 4.073 22 C -0.139 4.139 23 C -0.146 4.146 24 C -0.082 4.082 25 C -0.138 4.138 26 C -0.143 4.143 27 C -0.138 4.138 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.252 0.748 34 H 0.035 0.965 35 H 0.018 0.982 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.400 0.600 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.068 0.932 48 H 0.077 0.923 49 H 0.064 0.936 50 H 0.064 0.936 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.329 1.808 21.347 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.130 4.130 3 H 0.085 0.915 4 C 0.058 3.942 5 N -0.332 5.332 6 C -0.358 4.358 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.566 5.566 10 Si 0.740 3.260 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.206 1.206 14 C 0.016 3.984 15 C -0.132 4.132 16 H 0.098 0.902 17 C 0.009 3.991 18 N -0.374 5.374 19 C 0.307 3.693 20 O -0.420 6.420 21 C -0.076 4.076 22 C -0.197 4.197 23 C -0.203 4.203 24 C -0.101 4.101 25 C -0.175 4.175 26 C -0.180 4.180 27 C -0.175 4.175 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.036 0.964 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.235 0.765 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.112 0.888 46 H 0.103 0.897 47 H 0.087 0.913 48 H 0.095 0.905 49 H 0.083 0.917 50 H 0.083 0.917 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.141 2.579 21.195 21.352 hybrid contribution 0.516 -1.111 -0.778 1.451 sum 0.658 1.468 20.418 20.481 Atomic orbital electron populations 1.21687 0.95313 1.01596 1.00544 1.22432 0.95145 0.99086 0.96342 0.91531 1.21231 0.89268 0.93031 0.90683 1.44467 1.32796 1.51551 1.04405 1.19044 1.04161 1.18513 0.94088 0.90503 1.24820 0.98468 0.99875 0.97155 1.69976 1.30068 1.42634 1.13926 0.86139 0.78875 0.81645 0.79371 1.21637 1.21778 1.20648 1.21556 0.93062 0.96922 0.86824 1.22662 0.99329 0.98065 0.93153 0.90230 1.21364 0.98488 0.94290 0.84926 1.46098 1.65521 1.14428 1.11396 1.20496 0.77641 0.87671 0.83514 1.90669 1.51766 1.16348 1.83235 1.20723 0.96871 0.96124 0.93900 1.21827 0.98916 0.96648 1.02300 1.22016 0.94960 1.01282 1.02091 1.22336 0.98865 0.96141 0.92716 1.23061 0.97893 1.00526 0.96017 1.22822 1.00297 0.97796 0.97132 1.23044 0.99491 0.97313 0.97692 0.93659 0.92793 0.92726 0.94332 0.93097 0.93753 0.94694 0.96446 0.91594 0.91844 0.76530 0.92009 0.91371 0.92170 0.91647 0.91184 0.91847 0.88761 0.89738 0.91325 0.90469 0.91674 0.91678 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 9.17 37.16 0.34 -1.75 16 2 C -0.11 -2.00 3.00 -88.78 -0.27 -2.27 16 3 H 0.07 1.18 8.04 -51.93 -0.42 0.77 16 4 C 0.18 4.36 5.00 -3.06 -0.02 4.35 16 5 N -0.61 -15.25 3.39 -170.07 -0.58 -15.83 16 6 C -0.23 -6.35 10.26 -15.06 -0.15 -6.51 16 7 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 8 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 9 N -0.92 -26.86 10.37 55.49 0.58 -26.29 16 10 Si 0.91 21.93 29.56 -169.99 -5.02 16.91 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.14 2.84 6.40 -2.52 -0.02 2.82 16 15 C -0.11 -1.86 2.55 -88.47 -0.23 -2.08 16 16 H 0.08 1.31 8.05 -51.92 -0.42 0.89 16 17 C 0.13 1.95 5.13 -4.04 -0.02 1.93 16 18 N -0.72 -9.29 5.20 -60.30 -0.31 -9.61 16 19 C 0.52 6.95 6.44 -10.99 -0.07 6.88 16 20 O -0.54 -9.17 15.80 5.56 0.09 -9.09 16 21 C -0.07 -0.72 0.53 -155.67 -0.08 -0.80 16 22 C -0.14 -1.15 8.20 37.16 0.30 -0.85 16 23 C -0.15 -1.28 7.30 37.15 0.27 -1.01 16 24 C -0.08 -0.80 2.44 -89.80 -0.22 -1.02 16 25 C -0.14 -1.36 7.20 -25.82 -0.19 -1.55 16 26 C -0.14 -1.14 8.09 -25.82 -0.21 -1.34 16 27 C -0.14 -1.05 6.61 -25.92 -0.17 -1.22 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.04 1.03 7.64 -51.93 -0.40 0.64 16 32 H 0.05 1.34 6.91 -51.93 -0.36 0.98 16 33 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.02 0.36 8.01 -51.93 -0.42 -0.05 16 36 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.40 4.52 7.31 -40.82 -0.30 4.22 16 39 H 0.06 0.48 7.56 -51.93 -0.39 0.09 16 40 H 0.07 0.46 7.53 -51.93 -0.39 0.07 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.63 6.47 -51.93 -0.34 0.29 16 43 H 0.07 0.50 6.10 -51.93 -0.32 0.18 16 44 H 0.06 0.53 7.76 -51.93 -0.40 0.13 16 45 H 0.09 1.06 7.94 -51.93 -0.41 0.65 16 46 H 0.08 0.81 5.67 -51.93 -0.29 0.51 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 51 H 0.08 0.58 6.15 -51.93 -0.32 0.26 16 LS Contribution 386.19 15.07 5.82 5.82 Total: -1.00 -31.41 386.19 -9.61 -41.02 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -9.36 Total: 1.77 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -0.82 Total: -4.71 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.32 Total: -51.72 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.41 -9.61 -41.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102196127.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.306 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds