Wall clock time and date at job start Fri Apr 10 2020 22:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.63684 * 2 1 4 4 C 1.54332 * 111.00423 * 236.91729 * 2 1 3 5 5 N 1.47014 * 107.26884 * 219.60091 * 4 2 1 6 6 C 1.36936 * 125.65416 * 178.84951 * 5 4 2 7 7 H 1.07991 * 120.00330 * 174.34296 * 6 5 4 8 8 C 1.38808 * 119.99387 * 354.06819 * 6 5 4 9 9 N 1.31615 * 120.00397 * 7.48085 * 8 6 5 10 10 Si 1.86799 * 119.99965 * 187.47537 * 8 6 5 11 11 H 1.48500 * 109.47264 * 94.98196 * 10 8 6 12 12 H 1.48501 * 109.47359 * 214.98252 * 10 8 6 13 13 H 1.48505 * 109.46980 * 334.98304 * 10 8 6 14 14 C 1.47432 * 108.70028 * 358.58767 * 5 4 2 15 15 C 1.54912 * 104.83381 * 24.35485 * 14 5 4 16 16 H 1.09008 * 111.00157 * 81.09649 * 15 14 5 17 17 C 1.52995 * 111.00561 * 204.91684 * 15 14 5 18 18 N 1.46506 * 109.46965 * 293.54471 * 17 15 14 19 19 C 1.34775 * 120.00077 * 180.02562 * 18 17 15 20 20 O 1.21282 * 119.99795 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.00017 * 180.02562 * 19 18 17 22 22 C 1.52997 * 109.47016 * 299.99739 * 21 19 18 23 23 C 1.52991 * 109.47206 * 59.99946 * 21 19 18 24 24 C 1.53002 * 109.46730 * 179.97438 * 21 19 18 25 25 C 1.53783 * 113.61140 * 280.26769 * 24 21 19 26 26 C 1.53961 * 87.01866 * 220.04941 * 25 24 21 27 27 C 1.53784 * 87.11018 * 25.36538 * 26 25 24 28 28 H 1.08995 * 109.47447 * 296.86152 * 1 2 3 29 29 H 1.09004 * 109.46811 * 56.86664 * 1 2 3 30 30 H 1.09003 * 109.46853 * 176.85869 * 1 2 3 31 31 H 1.09006 * 109.99063 * 100.12540 * 4 2 1 32 32 H 1.08997 * 109.77831 * 338.96636 * 4 2 1 33 33 H 0.97004 * 120.00695 * 179.97438 * 9 8 6 34 34 H 1.09003 * 110.36546 * 143.19481 * 14 5 4 35 35 H 1.08992 * 110.36840 * 265.40746 * 14 5 4 36 36 H 1.08995 * 109.47274 * 53.54564 * 17 15 14 37 37 H 1.08997 * 109.46869 * 173.54660 * 17 15 14 38 38 H 0.97000 * 119.99967 * 359.97438 * 18 17 15 39 39 H 1.08994 * 109.47176 * 59.99939 * 22 21 19 40 40 H 1.09005 * 109.47108 * 180.02562 * 22 21 19 41 41 H 1.09005 * 109.47220 * 300.00111 * 22 21 19 42 42 H 1.09003 * 109.47605 * 53.33418 * 23 21 19 43 43 H 1.08997 * 109.47594 * 173.33666 * 23 21 19 44 44 H 1.09004 * 109.47498 * 293.33621 * 23 21 19 45 45 H 1.08995 * 112.85170 * 51.46375 * 24 21 19 46 46 H 1.08997 * 113.61983 * 334.56651 * 25 24 21 47 47 H 1.08997 * 113.61413 * 105.47936 * 25 24 21 48 48 H 1.08993 * 113.53918 * 270.81083 * 26 25 24 49 49 H 1.09003 * 113.74209 * 139.94439 * 26 25 24 50 50 H 1.08995 * 113.61196 * 220.08960 * 27 26 25 51 51 H 1.08999 * 113.61567 * 89.18190 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0832 -0.7864 -1.2072 5 7 3.2495 -1.5470 -0.7352 6 6 4.0126 -2.3919 -1.4961 7 1 4.9052 -2.8354 -1.0804 8 6 3.6357 -2.6827 -2.8000 9 7 2.6321 -2.0366 -3.3547 10 14 4.5530 -3.9909 -3.7677 11 1 3.8388 -5.2874 -3.6477 12 1 4.6204 -3.5934 -5.1969 13 1 5.9292 -4.1321 -3.2277 14 6 3.4652 -1.2446 0.6915 15 6 2.0789 -0.7933 1.2153 16 1 1.4470 -1.6529 1.4390 17 6 2.2235 0.1113 2.4407 18 7 2.7733 -0.6624 3.5567 19 6 2.9879 -0.0686 4.7473 20 8 2.7263 1.1064 4.8948 21 6 3.5539 -0.8644 5.8951 22 6 2.6122 -2.0242 6.2249 23 6 4.9262 -1.4168 5.5050 24 6 3.6984 0.0402 7.1206 25 6 4.9491 0.9342 7.0822 26 6 5.1055 0.6422 8.5857 27 6 4.3309 -0.6622 8.3336 28 1 -0.3634 0.4643 0.9167 29 1 -0.3633 0.5617 -0.8606 30 1 -0.3633 -1.0262 -0.0563 31 1 2.3849 -0.0962 -1.9951 32 1 1.3217 -1.4701 -1.5823 33 1 2.3689 -2.2396 -4.2660 34 1 3.7993 -2.1363 1.2220 35 1 4.1943 -0.4422 0.8032 36 1 2.8949 0.9371 2.2055 37 1 1.2461 0.5056 2.7185 38 1 2.9821 -1.6023 3.4388 39 1 2.5096 -2.6685 5.3518 40 1 3.0214 -2.5996 7.0554 41 1 1.6344 -1.6306 6.5029 42 1 5.5605 -0.6015 5.1568 43 1 5.3869 -1.8908 6.3716 44 1 4.8091 -2.1516 4.7084 45 1 2.7823 0.5810 7.3579 46 1 5.7567 0.5293 6.4725 47 1 4.7323 1.9790 6.8598 48 1 4.5748 1.3487 9.2239 49 1 6.1380 0.4837 8.8969 50 1 3.6159 -0.9043 9.1198 51 1 4.9693 -1.5044 8.0665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102196127.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:22 Heat of formation + Delta-G solvation = -30.784312 kcal Electronic energy + Delta-G solvation = -26660.819886 eV Core-core repulsion = 23173.887104 eV Total energy + Delta-G solvation = -3486.932782 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65264 -39.96473 -39.06893 -36.03835 -35.15401 -34.35262 -32.55295 -30.64619 -28.44799 -27.86169 -26.76961 -26.58468 -26.08774 -24.76801 -23.39826 -21.61506 -21.35126 -20.55277 -19.35966 -18.78859 -17.95798 -17.26250 -16.91317 -16.41791 -16.16002 -15.97986 -15.66294 -15.56967 -14.92367 -14.83943 -14.45280 -14.20954 -14.00654 -13.78211 -13.61725 -13.44937 -13.24335 -13.10248 -13.04060 -12.86858 -12.76862 -12.66962 -12.50520 -12.41159 -12.24825 -12.01491 -11.92589 -11.85317 -11.57952 -11.40000 -11.36694 -11.22415 -11.19952 -10.91529 -10.68344 -10.47961 -10.02403 -8.88891 -7.85627 -5.20088 1.46189 1.47738 1.56660 1.71865 2.24136 2.49623 3.32162 3.54786 3.60989 3.70339 3.73665 3.81869 3.92475 3.95344 3.98950 4.05138 4.17174 4.31759 4.36423 4.40909 4.49839 4.59506 4.71583 4.72929 4.78845 4.84149 4.86370 4.87158 4.89711 4.96449 4.98685 5.01352 5.07683 5.08315 5.15078 5.16477 5.20478 5.30287 5.33866 5.36556 5.40493 5.46178 5.48932 5.51105 5.70073 5.70359 5.81578 6.20437 6.60998 7.10487 7.30455 7.78346 8.43674 9.25258 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.020171 B = 0.003020 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.787299 B = 9267.806778 C =10120.294125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.071 0.929 4 C 0.191 3.809 5 N -0.629 5.629 6 C -0.243 4.243 7 H 0.083 0.917 8 C -0.066 4.066 9 N -0.950 5.950 10 Si 0.977 3.023 11 H -0.286 1.286 12 H -0.297 1.297 13 H -0.267 1.267 14 C 0.139 3.861 15 C -0.089 4.089 16 H 0.089 0.911 17 C 0.145 3.855 18 N -0.717 5.717 19 C 0.517 3.483 20 O -0.583 6.583 21 C -0.066 4.066 22 C -0.137 4.137 23 C -0.145 4.145 24 C -0.088 4.088 25 C -0.147 4.147 26 C -0.138 4.138 27 C -0.124 4.124 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.049 0.951 31 H -0.004 1.004 32 H 0.019 0.981 33 H 0.246 0.754 34 H 0.050 0.950 35 H 0.014 0.986 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.410 0.590 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.092 0.908 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.043 0.957 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.075 0.925 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 0.230 23.738 23.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.122 4.122 3 H 0.089 0.911 4 C 0.066 3.934 5 N -0.355 5.355 6 C -0.372 4.372 7 H 0.101 0.899 8 C -0.259 4.259 9 N -0.599 5.599 10 Si 0.805 3.195 11 H -0.212 1.212 12 H -0.224 1.224 13 H -0.191 1.191 14 C 0.014 3.986 15 C -0.109 4.109 16 H 0.107 0.893 17 C 0.021 3.979 18 N -0.369 5.369 19 C 0.305 3.695 20 O -0.463 6.463 21 C -0.070 4.070 22 C -0.195 4.195 23 C -0.202 4.202 24 C -0.107 4.107 25 C -0.184 4.184 26 C -0.175 4.175 27 C -0.161 4.161 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.014 0.986 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.032 0.968 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.246 0.754 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.106 0.894 47 H 0.062 0.938 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.094 0.906 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.696 0.982 23.624 23.655 hybrid contribution 0.387 -0.551 -1.522 1.665 sum 1.083 0.431 22.102 22.133 Atomic orbital electron populations 1.21632 0.92976 1.01696 1.02126 1.22314 0.96990 0.98470 0.94382 0.91083 1.20988 0.88376 0.91885 0.92151 1.44799 1.32753 1.51329 1.06574 1.19458 1.04600 1.18486 0.94619 0.89881 1.25670 0.99760 1.02061 0.98389 1.70202 1.31772 1.44071 1.13811 0.85086 0.78294 0.78806 0.77324 1.21250 1.22431 1.19148 1.21719 0.94957 0.97434 0.84447 1.22457 0.97082 0.98269 0.93091 0.89286 1.21098 0.98719 0.93487 0.84595 1.46018 1.65190 1.14774 1.10889 1.21193 0.76744 0.87425 0.84128 1.90654 1.53462 1.18262 1.83889 1.20741 0.97752 0.96217 0.92244 1.21848 0.98189 0.96019 1.03423 1.22041 0.93921 1.01011 1.03268 1.22331 0.97955 0.96506 0.93886 1.23112 0.98287 0.99156 0.97831 1.22811 1.01200 0.98062 0.95474 1.23010 0.99349 0.97286 0.96497 0.90688 0.92760 0.93203 0.98620 0.96229 0.94450 0.93148 0.96777 0.92917 0.91092 0.75358 0.91329 0.89260 0.92863 0.92911 0.88980 0.91236 0.90806 0.89423 0.93814 0.90483 0.90435 0.90614 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 9.17 71.98 0.66 -3.14 16 2 C -0.10 -3.66 3.00 -9.60 -0.03 -3.69 16 3 H 0.07 2.50 8.04 -2.39 -0.02 2.48 16 4 C 0.19 9.44 5.00 86.73 0.43 9.87 16 5 N -0.63 -32.02 3.39 -691.98 -2.35 -34.37 16 6 C -0.24 -13.52 10.26 84.03 0.86 -12.66 16 7 H 0.08 4.40 7.84 -2.92 -0.02 4.37 16 8 C -0.07 -3.74 5.48 84.86 0.46 -3.28 16 9 N -0.95 -57.43 10.37 21.65 0.22 -57.20 16 10 Si 0.98 45.54 29.56 68.60 2.03 47.56 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 13 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 14 C 0.14 5.43 6.40 86.85 0.56 5.98 16 15 C -0.09 -2.83 2.55 -9.40 -0.02 -2.86 16 16 H 0.09 2.72 8.05 -2.38 -0.02 2.70 16 17 C 0.15 4.03 5.13 86.38 0.44 4.47 16 18 N -0.72 -17.15 5.20 -463.07 -2.41 -19.56 16 19 C 0.52 13.21 6.44 87.66 0.56 13.77 16 20 O -0.58 -19.63 15.80 -3.04 -0.05 -19.68 16 21 C -0.07 -1.18 0.53 -52.93 -0.03 -1.21 16 22 C -0.14 -1.87 8.20 71.98 0.59 -1.28 16 23 C -0.15 -2.16 7.30 71.98 0.53 -1.63 16 24 C -0.09 -1.61 2.44 -10.26 -0.03 -1.63 16 25 C -0.15 -2.80 7.20 31.18 0.22 -2.58 16 26 C -0.14 -1.94 8.09 31.18 0.25 -1.68 16 27 C -0.12 -1.53 6.61 31.12 0.21 -1.33 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.61 8.14 -2.38 -0.02 1.60 16 30 H 0.05 1.54 8.08 -2.39 -0.02 1.52 16 31 H 0.00 -0.25 7.64 -2.38 -0.02 -0.27 16 32 H 0.02 1.08 6.91 -2.39 -0.02 1.06 16 33 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 35 H 0.01 0.58 8.01 -2.39 -0.02 0.56 16 36 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.41 8.23 7.31 -92.71 -0.68 7.55 16 39 H 0.07 0.85 7.56 -2.39 -0.02 0.83 16 40 H 0.09 0.86 7.53 -2.38 -0.02 0.84 16 41 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.05 0.93 6.47 -2.39 -0.02 0.91 16 43 H 0.09 0.97 6.10 -2.39 -0.01 0.96 16 44 H 0.07 0.95 7.76 -2.38 -0.02 0.93 16 45 H 0.07 1.65 7.94 -2.39 -0.02 1.64 16 46 H 0.09 1.59 5.67 -2.39 -0.01 1.58 16 47 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.10 0.94 6.15 -2.39 -0.01 0.93 16 Total: -1.00 -70.58 386.19 3.33 -67.25 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.21 Total: 18.86 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 5.68 Total: -2.87 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -4.53 Total: -111.13 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.05 Total: -19.68 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -70.58 3.33 -67.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102196127.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.465 kcal (2) G-P(sol) polarization free energy of solvation -70.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds