Wall clock time and date at job start Fri Apr 10 2020 22:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 5 5 O 1.21283 * 120.00472 * 240.00297 * 4 2 1 6 6 N 1.34777 * 119.99538 * 59.99635 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 H 1.09004 * 110.64159 * 54.30064 * 8 7 6 10 10 C 1.54325 * 110.71948 * 291.15745 * 8 7 6 11 11 N 1.47020 * 107.27137 * 219.44289 * 10 8 7 12 12 C 1.36933 * 125.64585 * 178.97413 * 11 10 8 13 13 H 1.07994 * 120.00444 * 0.02562 * 12 11 10 14 14 C 1.38815 * 119.99577 * 179.97438 * 12 11 10 15 15 N 1.31621 * 120.00364 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99791 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47319 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47457 * 120.00172 * 16 14 12 19 19 H 1.48502 * 109.47007 * 239.99985 * 16 14 12 20 20 C 1.47420 * 108.70288 * 358.94004 * 11 10 8 21 21 C 1.55126 * 104.94474 * 24.00408 * 20 11 10 22 22 H 1.08997 * 110.93604 * 81.21184 * 21 20 11 23 23 C 1.52999 * 111.16318 * 205.13163 * 21 20 11 24 24 C 1.52999 * 109.47028 * 119.99588 * 2 1 3 25 25 C 1.54268 * 110.03533 * 297.16522 * 24 2 1 26 26 C 1.54883 * 104.19985 * 217.10491 * 25 24 2 27 27 C 1.54894 * 102.74668 * 37.94452 * 26 25 24 28 28 C 1.53879 * 110.03260 * 180.02562 * 24 2 1 29 29 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 31 31 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 32 32 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 33 33 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 34 34 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 35 35 H 1.08997 * 109.88334 * 338.86093 * 10 8 7 36 36 H 1.09003 * 109.88125 * 100.02407 * 10 8 7 37 37 H 0.97000 * 120.00012 * 180.02562 * 15 14 12 38 38 H 1.09002 * 110.36938 * 142.96642 * 20 11 10 39 39 H 1.09002 * 110.37126 * 265.18026 * 20 11 10 40 40 H 1.08998 * 109.46911 * 172.16997 * 23 21 20 41 41 H 1.09004 * 109.46795 * 292.16981 * 23 21 20 42 42 H 1.08998 * 109.47407 * 52.16806 * 23 21 20 43 43 H 1.09004 * 110.01872 * 58.61390 * 24 2 1 44 44 H 1.08994 * 110.48614 * 335.78633 * 25 24 2 45 45 H 1.08997 * 110.48386 * 98.42603 * 25 24 2 46 46 H 1.08996 * 110.76054 * 279.63279 * 26 25 24 47 47 H 1.09002 * 110.91582 * 156.33136 * 26 25 24 48 48 H 1.09007 * 110.48440 * 203.37876 * 27 26 25 49 49 H 1.08996 * 110.59998 * 80.79484 * 27 26 25 50 50 H 1.09008 * 110.03114 * 238.57035 * 28 24 2 51 51 H 1.09001 * 110.03114 * 359.97438 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.2000 -0.9372 -3.6506 8 6 1.6946 -0.2128 -4.8999 9 1 1.9617 0.8435 -4.8661 10 6 0.1686 -0.3856 -5.0514 11 7 -0.1089 -0.5787 -6.4822 12 6 -1.3444 -0.7883 -7.0342 13 1 -2.2196 -0.8219 -6.4024 14 6 -1.4720 -0.9564 -8.4063 15 7 -0.4054 -0.9149 -9.1764 16 14 -3.1574 -1.2415 -9.1595 17 1 -4.1849 -1.2440 -8.0873 18 1 -3.4566 -0.1567 -10.1285 19 1 -3.1708 -2.5499 -9.8617 20 6 1.1630 -0.5087 -7.2241 21 6 2.2533 -0.8794 -6.1847 22 1 2.3253 -1.9603 -6.0644 23 6 3.6083 -0.2810 -6.5682 24 6 2.0399 -0.7212 1.2493 25 6 1.5922 0.0362 2.5165 26 6 2.7934 -0.1000 3.4848 27 6 4.0122 0.0244 2.5370 28 6 3.5786 -0.7281 1.2627 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.1493 0.5388 -2.5436 33 1 3.2901 -0.9367 -3.6464 34 1 1.8372 -1.9650 -3.6549 35 1 -0.1634 -1.2578 -4.4883 36 1 -0.3431 0.5072 -4.6917 37 1 -0.4947 -1.0320 -10.1352 38 1 1.1626 -1.2242 -8.0463 39 1 1.3274 0.5009 -7.6009 40 1 4.3179 -0.4384 -5.7560 41 1 3.9769 -0.7662 -7.4721 42 1 3.4952 0.7878 -6.7499 43 1 1.6614 -1.7431 1.2709 44 1 1.4039 1.0850 2.2875 45 1 0.7032 -0.4275 2.9439 46 1 2.7845 -1.0725 3.9770 47 1 2.7929 0.7039 4.2209 48 1 4.8893 -0.4480 2.9795 49 1 4.2169 1.0708 2.3109 50 1 3.9471 -1.7537 1.2914 51 1 3.9620 -0.2182 0.3789 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102507235.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:33 Heat of formation + Delta-G solvation = -47.292075 kcal Electronic energy + Delta-G solvation = -26280.430912 eV Core-core repulsion = 22792.782300 eV Total energy + Delta-G solvation = -3487.648613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.28052 -38.40531 -37.59622 -34.61962 -33.58647 -32.80222 -30.75815 -29.28027 -28.91842 -27.69313 -26.04876 -25.24168 -23.99570 -22.60516 -20.79918 -20.66662 -19.86903 -19.69834 -19.07109 -17.17699 -16.72301 -16.13262 -15.81064 -15.26472 -15.00457 -14.96775 -14.39438 -13.78865 -13.72887 -13.50549 -13.44549 -13.15487 -12.95056 -12.63862 -12.55352 -12.39559 -11.90768 -11.71164 -11.56482 -11.42230 -11.25696 -11.21294 -11.16797 -11.13676 -10.88002 -10.86130 -10.82047 -10.77036 -10.45955 -10.21126 -10.01280 -9.91674 -9.83901 -9.61619 -9.31950 -8.88084 -8.66384 -6.84073 -5.66376 -3.08126 2.74554 3.29382 3.38665 3.44129 3.46640 4.34194 4.42209 4.47073 4.49416 4.80181 4.89344 4.96455 5.11741 5.23086 5.26147 5.29761 5.32435 5.42506 5.45190 5.47030 5.49180 5.55279 5.58563 5.60241 5.64338 5.75796 5.77683 5.84540 5.88883 5.93443 5.99369 6.07776 6.11336 6.14821 6.20567 6.26291 6.27296 6.31325 6.50093 6.54296 6.59851 6.62663 6.80374 6.95271 7.52932 7.62217 7.62773 7.85829 8.33584 8.35678 9.21276 9.82125 10.47080 11.37410 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.023598 B = 0.002732 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.236212 B =10248.187994 C =11174.636492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 H 0.095 0.905 4 C 0.513 3.487 5 O -0.541 6.541 6 N -0.726 5.726 7 C 0.133 3.867 8 C -0.110 4.110 9 H 0.075 0.925 10 C 0.142 3.858 11 N -0.605 5.605 12 C -0.222 4.222 13 H 0.077 0.923 14 C -0.012 4.012 15 N -0.922 5.922 16 Si 0.914 3.086 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.290 1.290 20 C 0.159 3.841 21 C -0.111 4.111 22 H 0.071 0.929 23 C -0.134 4.134 24 C -0.071 4.071 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.129 4.129 28 C -0.107 4.107 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.400 0.600 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.024 0.976 36 H 0.017 0.983 37 H 0.251 0.749 38 H 0.106 0.894 39 H 0.013 0.987 40 H 0.044 0.956 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.066 0.934 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.145 4.331 20.953 22.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 H 0.113 0.887 4 C 0.299 3.701 5 O -0.418 6.418 6 N -0.377 5.377 7 C 0.009 3.991 8 C -0.129 4.129 9 H 0.094 0.906 10 C 0.016 3.984 11 N -0.331 5.331 12 C -0.350 4.350 13 H 0.095 0.905 14 C -0.207 4.207 15 N -0.570 5.570 16 Si 0.745 3.255 17 H -0.206 1.206 18 H -0.218 1.218 19 H -0.217 1.217 20 C 0.034 3.966 21 C -0.132 4.132 22 H 0.089 0.911 23 C -0.192 4.192 24 C -0.089 4.089 25 C -0.157 4.157 26 C -0.163 4.163 27 C -0.167 4.167 28 C -0.145 4.145 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.234 0.766 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.035 0.965 37 H 0.062 0.938 38 H 0.124 0.876 39 H 0.031 0.969 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.531 3.572 20.805 22.412 hybrid contribution -1.172 0.356 -0.573 1.353 sum 6.358 3.929 20.232 21.568 Atomic orbital electron populations 1.21811 0.92897 1.02960 1.02705 1.21482 0.97484 1.00550 0.93116 0.88741 1.20622 0.80134 0.84719 0.84618 1.90688 1.37981 1.26292 1.86844 1.46128 1.53449 1.32250 1.05858 1.21422 0.98522 0.96421 0.82693 1.22490 0.97193 0.99425 0.93772 0.90637 1.21324 0.91647 0.97351 0.88082 1.44492 1.03885 1.84422 1.00261 1.19115 0.83890 1.41284 0.90705 0.90504 1.24793 0.97563 1.02378 0.96009 1.69808 1.26323 1.57011 1.03897 0.86005 0.83023 0.77468 0.79044 1.20552 1.21768 1.21721 1.22015 0.81217 0.99927 0.93398 1.22630 0.95819 0.99200 0.95514 0.91083 1.21643 0.96291 1.00686 1.00543 1.21575 0.95875 0.99387 0.92113 1.22456 0.97897 1.00341 0.95003 1.22484 0.94938 1.01472 0.97369 1.22426 0.97721 1.00359 0.96154 1.22084 0.94558 1.00860 0.97000 0.91985 0.91393 0.91921 0.76610 0.91813 0.91444 0.95838 0.96486 0.93777 0.87633 0.96949 0.93682 0.92669 0.92983 0.90466 0.91444 0.91655 0.91622 0.91840 0.92015 0.91968 0.91525 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.89 37.16 0.33 -0.91 16 2 C -0.10 -1.01 2.02 -91.78 -0.19 -1.20 16 3 H 0.09 0.78 8.12 -51.93 -0.42 0.36 16 4 C 0.51 6.74 6.54 -10.99 -0.07 6.67 16 5 O -0.54 -8.99 14.67 5.55 0.08 -8.90 16 6 N -0.73 -9.26 5.32 -60.29 -0.32 -9.58 16 7 C 0.13 1.98 5.00 -4.04 -0.02 1.96 16 8 C -0.11 -1.82 2.45 -88.78 -0.22 -2.03 16 9 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 10 C 0.14 2.87 6.64 -3.06 -0.02 2.85 16 11 N -0.61 -15.36 3.40 -169.94 -0.58 -15.94 16 12 C -0.22 -6.16 10.27 -15.06 -0.15 -6.32 16 13 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 14 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 15 N -0.92 -26.80 10.09 55.49 0.56 -26.24 16 16 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 C 0.16 3.81 5.37 -2.41 -0.01 3.79 16 21 C -0.11 -2.05 3.10 -88.35 -0.27 -2.33 16 22 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 23 C -0.13 -2.06 9.32 37.16 0.35 -1.72 16 24 C -0.07 -0.68 2.12 -89.50 -0.19 -0.87 16 25 C -0.12 -0.90 5.32 -25.07 -0.13 -1.03 16 26 C -0.13 -0.92 6.91 -24.74 -0.17 -1.09 16 27 C -0.13 -1.06 6.83 -25.10 -0.17 -1.24 16 28 C -0.11 -1.12 5.07 -25.64 -0.13 -1.25 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.47 7.27 -51.93 -0.38 0.09 16 31 H 0.06 0.52 7.56 -51.93 -0.39 0.12 16 32 H 0.40 4.36 7.82 -40.82 -0.32 4.04 16 33 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 35 H 0.02 0.49 7.73 -51.93 -0.40 0.09 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.11 2.87 5.87 -51.93 -0.31 2.57 16 39 H 0.01 0.32 7.99 -51.93 -0.41 -0.10 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 43 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 44 H 0.07 0.46 7.75 -51.93 -0.40 0.06 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 49 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 51 H 0.06 0.72 6.91 -51.93 -0.36 0.36 16 LS Contribution 388.70 15.07 5.86 5.86 Total: -1.00 -31.15 388.70 -10.28 -41.43 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -9.68 Total: 1.49 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -1.17 Total: -5.15 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.34 Total: -51.75 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.90 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.15 -10.28 -41.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102507235.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.863 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds