Wall clock time and date at job start Fri Apr 10 2020 22:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 5 5 O 1.21283 * 120.00472 * 240.00297 * 4 2 1 6 6 N 1.34777 * 119.99538 * 59.99635 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 H 1.09004 * 110.64159 * 54.30064 * 8 7 6 10 10 C 1.54325 * 110.71948 * 291.15745 * 8 7 6 11 11 N 1.47020 * 107.27137 * 219.44289 * 10 8 7 12 12 C 1.36933 * 125.64585 * 178.97413 * 11 10 8 13 13 H 1.07994 * 120.00444 * 0.02562 * 12 11 10 14 14 C 1.38815 * 119.99577 * 179.97438 * 12 11 10 15 15 N 1.31621 * 120.00364 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99791 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47319 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47457 * 120.00172 * 16 14 12 19 19 H 1.48502 * 109.47007 * 239.99985 * 16 14 12 20 20 C 1.47420 * 108.70288 * 358.94004 * 11 10 8 21 21 C 1.55126 * 104.94474 * 24.00408 * 20 11 10 22 22 H 1.08997 * 110.93604 * 81.21184 * 21 20 11 23 23 C 1.52999 * 111.16318 * 205.13163 * 21 20 11 24 24 C 1.52999 * 109.47028 * 119.99588 * 2 1 3 25 25 C 1.54268 * 110.03533 * 297.16522 * 24 2 1 26 26 C 1.54883 * 104.19985 * 217.10491 * 25 24 2 27 27 C 1.54894 * 102.74668 * 37.94452 * 26 25 24 28 28 C 1.53879 * 110.03260 * 180.02562 * 24 2 1 29 29 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 31 31 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 32 32 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 33 33 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 34 34 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 35 35 H 1.08997 * 109.88334 * 338.86093 * 10 8 7 36 36 H 1.09003 * 109.88125 * 100.02407 * 10 8 7 37 37 H 0.97000 * 120.00012 * 180.02562 * 15 14 12 38 38 H 1.09002 * 110.36938 * 142.96642 * 20 11 10 39 39 H 1.09002 * 110.37126 * 265.18026 * 20 11 10 40 40 H 1.08998 * 109.46911 * 172.16997 * 23 21 20 41 41 H 1.09004 * 109.46795 * 292.16981 * 23 21 20 42 42 H 1.08998 * 109.47407 * 52.16806 * 23 21 20 43 43 H 1.09004 * 110.01872 * 58.61390 * 24 2 1 44 44 H 1.08994 * 110.48614 * 335.78633 * 25 24 2 45 45 H 1.08997 * 110.48386 * 98.42603 * 25 24 2 46 46 H 1.08996 * 110.76054 * 279.63279 * 26 25 24 47 47 H 1.09002 * 110.91582 * 156.33136 * 26 25 24 48 48 H 1.09007 * 110.48440 * 203.37876 * 27 26 25 49 49 H 1.08996 * 110.59998 * 80.79484 * 27 26 25 50 50 H 1.09008 * 110.03114 * 238.57035 * 28 24 2 51 51 H 1.09001 * 110.03114 * 359.97438 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.2000 -0.9372 -3.6506 8 6 1.6946 -0.2128 -4.8999 9 1 1.9617 0.8435 -4.8661 10 6 0.1686 -0.3856 -5.0514 11 7 -0.1089 -0.5787 -6.4822 12 6 -1.3444 -0.7883 -7.0342 13 1 -2.2196 -0.8219 -6.4024 14 6 -1.4720 -0.9564 -8.4063 15 7 -0.4054 -0.9149 -9.1764 16 14 -3.1574 -1.2415 -9.1595 17 1 -4.1849 -1.2440 -8.0873 18 1 -3.4566 -0.1567 -10.1285 19 1 -3.1708 -2.5499 -9.8617 20 6 1.1630 -0.5087 -7.2241 21 6 2.2533 -0.8794 -6.1847 22 1 2.3253 -1.9603 -6.0644 23 6 3.6083 -0.2810 -6.5682 24 6 2.0399 -0.7212 1.2493 25 6 1.5922 0.0362 2.5165 26 6 2.7934 -0.1000 3.4848 27 6 4.0122 0.0244 2.5370 28 6 3.5786 -0.7281 1.2627 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.1493 0.5388 -2.5436 33 1 3.2901 -0.9367 -3.6464 34 1 1.8372 -1.9650 -3.6549 35 1 -0.1634 -1.2578 -4.4883 36 1 -0.3431 0.5072 -4.6917 37 1 -0.4947 -1.0320 -10.1352 38 1 1.1626 -1.2242 -8.0463 39 1 1.3274 0.5009 -7.6009 40 1 4.3179 -0.4384 -5.7560 41 1 3.9769 -0.7662 -7.4721 42 1 3.4952 0.7878 -6.7499 43 1 1.6614 -1.7431 1.2709 44 1 1.4039 1.0850 2.2875 45 1 0.7032 -0.4275 2.9439 46 1 2.7845 -1.0725 3.9770 47 1 2.7929 0.7039 4.2209 48 1 4.8893 -0.4480 2.9795 49 1 4.2169 1.0708 2.3109 50 1 3.9471 -1.7537 1.2914 51 1 3.9620 -0.2182 0.3789 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102507235.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:33 Heat of formation + Delta-G solvation = -64.877860 kcal Electronic energy + Delta-G solvation = -26281.193489 eV Core-core repulsion = 22792.782300 eV Total energy + Delta-G solvation = -3488.411190 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.28365 -39.77648 -38.63875 -36.02303 -34.80474 -34.09972 -32.56841 -30.71423 -29.60201 -28.44742 -27.83959 -26.71033 -25.15599 -24.03698 -21.86699 -21.43366 -21.38371 -20.86500 -20.21644 -18.88210 -18.04976 -17.25752 -16.89645 -16.49981 -16.31670 -15.85497 -15.80664 -15.54962 -14.93023 -14.67306 -14.42962 -14.20259 -14.07551 -13.97692 -13.60182 -13.51952 -13.40490 -13.09925 -12.98883 -12.77975 -12.68165 -12.47815 -12.46242 -11.96030 -11.93640 -11.86986 -11.84558 -11.81507 -11.60647 -11.53086 -11.42388 -11.41381 -11.26367 -11.19889 -10.76343 -10.56603 -10.03096 -8.88388 -7.77865 -5.22266 1.45729 1.46576 1.56821 1.71193 2.25286 2.48623 3.31452 3.57124 3.63183 3.71911 3.75864 3.81865 3.89704 3.96776 4.03836 4.23600 4.27660 4.37711 4.47629 4.50517 4.62054 4.62679 4.73174 4.74196 4.76963 4.80846 4.85036 4.85504 4.89240 4.94117 4.97429 5.02731 5.08849 5.15335 5.16234 5.19480 5.28202 5.31852 5.35487 5.39336 5.46270 5.47060 5.51191 5.52948 5.58483 5.71370 5.84151 6.31419 6.61141 7.10838 7.31056 7.78548 8.42241 9.23899 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.023598 B = 0.002732 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.236212 B =10248.187994 C =11174.636492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.118 0.882 4 C 0.510 3.490 5 O -0.580 6.580 6 N -0.719 5.719 7 C 0.146 3.854 8 C -0.088 4.088 9 H 0.095 0.905 10 C 0.139 3.861 11 N -0.629 5.629 12 C -0.237 4.237 13 H 0.080 0.920 14 C -0.069 4.069 15 N -0.949 5.949 16 Si 0.979 3.021 17 H -0.267 1.267 18 H -0.291 1.291 19 H -0.292 1.292 20 C 0.162 3.838 21 C -0.102 4.102 22 H 0.063 0.937 23 C -0.127 4.127 24 C -0.071 4.071 25 C -0.113 4.113 26 C -0.124 4.124 27 C -0.126 4.126 28 C -0.108 4.108 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.411 0.589 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.018 0.982 36 H 0.030 0.970 37 H 0.246 0.754 38 H 0.068 0.932 39 H -0.009 1.009 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.080 0.920 48 H 0.062 0.938 49 H 0.071 0.929 50 H 0.043 0.957 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.908 5.990 23.158 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.136 0.864 4 C 0.297 3.703 5 O -0.460 6.460 6 N -0.371 5.371 7 C 0.021 3.979 8 C -0.108 4.108 9 H 0.113 0.887 10 C 0.014 3.986 11 N -0.355 5.355 12 C -0.366 4.366 13 H 0.098 0.902 14 C -0.261 4.261 15 N -0.599 5.599 16 Si 0.808 3.192 17 H -0.191 1.191 18 H -0.218 1.218 19 H -0.220 1.220 20 C 0.037 3.963 21 C -0.122 4.122 22 H 0.081 0.919 23 C -0.184 4.184 24 C -0.090 4.090 25 C -0.151 4.151 26 C -0.161 4.161 27 C -0.163 4.163 28 C -0.146 4.146 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.248 0.752 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.036 0.964 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.009 0.991 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.081 0.919 49 H 0.090 0.910 50 H 0.061 0.939 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.283 5.255 23.045 24.734 hybrid contribution -1.090 -0.196 -1.250 1.670 sum 6.193 5.058 21.796 23.216 Atomic orbital electron populations 1.21822 0.91713 1.02441 1.04131 1.21508 0.98256 1.01058 0.90949 0.86406 1.21304 0.79256 0.84243 0.85449 1.90677 1.39770 1.28136 1.87374 1.46034 1.53434 1.32411 1.05213 1.21123 0.98768 0.95203 0.82765 1.22322 0.94353 1.00503 0.93580 0.88679 1.21486 0.94346 0.97426 0.85323 1.44818 1.03666 1.84444 1.02559 1.19477 0.85180 1.40759 0.91185 0.90233 1.25637 1.01083 1.02811 0.96581 1.70069 1.28120 1.58009 1.03658 0.84994 0.79257 0.76809 0.78181 1.19099 1.21824 1.21958 1.21787 0.82843 0.97558 0.94073 1.22471 0.95873 0.99182 0.94679 0.91870 1.21591 0.94706 1.00559 1.01557 1.21567 0.95246 0.98735 0.93496 1.22444 0.98184 1.00856 0.93589 1.22496 0.94188 1.02009 0.97410 1.22414 0.98280 1.00480 0.95169 1.22044 0.95243 0.99635 0.97655 0.93489 0.89079 0.91406 0.75222 0.91040 0.93540 0.96368 0.95227 0.94372 0.91445 0.99098 0.90912 0.92739 0.92598 0.92649 0.89889 0.90867 0.91933 0.90168 0.91893 0.91005 0.93855 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.89 71.98 0.64 -1.44 16 2 C -0.10 -1.66 2.02 -11.54 -0.02 -1.69 16 3 H 0.12 1.53 8.12 -2.39 -0.02 1.51 16 4 C 0.51 12.82 6.54 87.66 0.57 13.39 16 5 O -0.58 -19.30 14.67 -3.04 -0.04 -19.35 16 6 N -0.72 -17.05 5.32 -463.05 -2.46 -19.51 16 7 C 0.15 4.14 5.00 86.38 0.43 4.57 16 8 C -0.09 -2.80 2.45 -9.60 -0.02 -2.82 16 9 H 0.10 2.70 8.04 -2.38 -0.02 2.68 16 10 C 0.14 5.53 6.64 86.73 0.58 6.11 16 11 N -0.63 -32.39 3.40 -691.57 -2.35 -34.74 16 12 C -0.24 -13.35 10.27 84.03 0.86 -12.48 16 13 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 14 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 15 N -0.95 -56.89 10.09 21.65 0.22 -56.67 16 16 Si 0.98 45.89 29.55 68.60 2.03 47.92 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 20 C 0.16 7.97 5.37 86.93 0.47 8.43 16 21 C -0.10 -3.72 3.10 -9.33 -0.03 -3.75 16 22 H 0.06 2.40 8.05 -2.39 -0.02 2.38 16 23 C -0.13 -3.69 9.32 71.98 0.67 -3.02 16 24 C -0.07 -1.30 2.12 -10.07 -0.02 -1.32 16 25 C -0.11 -1.39 5.32 31.67 0.17 -1.22 16 26 C -0.12 -1.51 6.91 31.88 0.22 -1.29 16 27 C -0.13 -1.86 6.83 31.65 0.22 -1.64 16 28 C -0.11 -2.20 5.07 31.30 0.16 -2.04 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 0.92 7.27 -2.39 -0.02 0.91 16 31 H 0.07 0.92 7.56 -2.39 -0.02 0.90 16 32 H 0.41 7.87 7.82 -92.71 -0.73 7.14 16 33 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.05 1.54 8.00 -2.39 -0.02 1.52 16 35 H 0.02 0.75 7.73 -2.39 -0.02 0.73 16 36 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 38 H 0.07 3.84 5.87 -2.39 -0.01 3.82 16 39 H -0.01 -0.47 7.99 -2.39 -0.02 -0.49 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.05 1.60 8.08 -2.39 -0.02 1.58 16 43 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 44 H 0.08 0.80 7.75 -2.39 -0.02 0.78 16 45 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 49 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 51 H 0.05 1.08 6.91 -2.39 -0.02 1.06 16 Total: -1.00 -69.97 388.70 2.89 -67.07 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.15 Total: 18.95 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 5.35 Total: -3.67 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -4.59 Total: -110.92 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.04 Total: -19.35 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -69.97 2.89 -67.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102507235.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.194 kcal (2) G-P(sol) polarization free energy of solvation -69.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds