Wall clock time and date at job start Fri Apr 10 2020 22:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.91785 * 2 1 4 4 C 1.54908 * 111.00021 * 236.09635 * 2 1 3 5 5 N 1.47428 * 104.83036 * 204.91700 * 4 2 1 6 6 C 1.36943 * 125.64749 * 204.16459 * 5 4 2 7 7 H 1.08001 * 119.99876 * 179.97438 * 6 5 4 8 8 C 1.38811 * 119.99989 * 359.95663 * 6 5 4 9 9 N 1.31621 * 120.00055 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00045 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47095 * 90.00168 * 10 8 6 12 12 H 1.48499 * 109.47038 * 210.00289 * 10 8 6 13 13 H 1.48502 * 109.46925 * 330.00344 * 10 8 6 14 14 C 1.47014 * 108.70477 * 24.12873 * 5 4 2 15 15 C 1.54331 * 107.27155 * 358.94386 * 14 5 4 16 16 H 1.08992 * 110.72387 * 96.34875 * 15 14 5 17 17 C 1.53002 * 110.71837 * 219.44586 * 15 14 5 18 18 C 1.52997 * 109.46978 * 293.54028 * 17 15 14 19 19 N 1.46504 * 109.47417 * 180.02562 * 18 17 15 20 20 C 1.34770 * 120.00094 * 180.02562 * 19 18 17 21 21 O 1.21281 * 120.00244 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99761 * 180.02562 * 20 19 18 23 23 C 1.52999 * 109.47466 * 300.00109 * 22 20 19 24 24 C 1.52997 * 109.47317 * 180.02562 * 23 22 20 25 25 C 1.53000 * 109.47060 * 59.99960 * 24 23 22 26 26 C 1.53002 * 109.47233 * 299.99657 * 25 24 23 27 27 C 1.52997 * 109.46817 * 60.00194 * 26 25 24 28 28 H 1.09003 * 109.46772 * 296.10130 * 1 2 3 29 29 H 1.08996 * 109.47481 * 56.09349 * 1 2 3 30 30 H 1.08999 * 109.47466 * 176.10011 * 1 2 3 31 31 H 1.08996 * 110.36797 * 86.08072 * 4 2 1 32 32 H 1.09002 * 110.37196 * 323.75297 * 4 2 1 33 33 H 0.97002 * 120.00348 * 180.02562 * 9 8 6 34 34 H 1.08993 * 109.88710 * 239.52550 * 14 5 4 35 35 H 1.09002 * 110.01436 * 118.42941 * 14 5 4 36 36 H 1.09002 * 109.47097 * 173.54227 * 17 15 14 37 37 H 1.09001 * 109.47600 * 53.53987 * 17 15 14 38 38 H 1.09002 * 109.47497 * 60.00450 * 18 17 15 39 39 H 1.08998 * 109.47624 * 300.00543 * 18 17 15 40 40 H 0.97006 * 119.99455 * 0.02562 * 19 18 17 41 41 H 1.09002 * 109.47152 * 59.99841 * 22 20 19 42 42 H 1.08996 * 109.46929 * 59.99194 * 23 22 20 43 43 H 1.09002 * 109.46716 * 299.99999 * 23 22 20 44 44 H 1.09002 * 109.47153 * 299.99641 * 24 23 22 45 45 H 1.09001 * 109.46832 * 179.97438 * 24 23 22 46 46 H 1.08992 * 109.47399 * 59.99823 * 25 24 23 47 47 H 1.09004 * 109.46724 * 180.02562 * 25 24 23 48 48 H 1.08993 * 109.47662 * 180.02562 * 26 25 24 49 49 H 1.09002 * 109.47075 * 300.00932 * 26 25 24 50 50 H 1.09002 * 109.47153 * 60.00231 * 27 26 25 51 51 H 1.09001 * 109.47289 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0851 -0.8067 -1.2003 5 7 3.4270 -1.2432 -0.7733 6 6 4.4644 -1.5655 -1.6072 7 1 5.4130 -1.8751 -1.1942 8 6 4.2964 -1.4948 -2.9833 9 7 3.1402 -1.1173 -3.4866 10 14 5.7115 -1.9338 -4.1208 11 1 5.6596 -3.3835 -4.4388 12 1 5.6002 -1.1475 -5.3757 13 1 6.9998 -1.6195 -3.4523 14 6 3.4674 -1.2742 0.6959 15 6 2.0861 -0.8080 1.2022 16 1 1.4478 -1.6632 1.4240 17 6 2.2350 0.0876 2.4338 18 6 2.7849 -0.7362 3.5999 19 7 2.9269 0.1212 4.7794 20 6 3.3976 -0.3924 5.9330 21 8 3.7032 -1.5645 5.9950 22 6 3.5432 0.4894 7.1464 23 6 4.5069 1.6353 6.8315 24 6 4.6551 2.5302 8.0636 25 6 5.2060 1.7062 9.2291 26 6 4.2423 0.5603 9.5441 27 6 4.0941 -0.3346 8.3120 28 1 -0.3633 0.4522 0.9229 29 1 -0.3634 0.5732 -0.8529 30 1 -0.3634 -1.0252 -0.0699 31 1 2.1559 -0.1721 -2.0837 32 1 1.4518 -1.6705 -1.4024 33 1 3.0227 -1.0682 -4.4483 34 1 4.2425 -0.5999 1.0598 35 1 3.6661 -2.2884 1.0423 36 1 1.2619 0.4970 2.7051 37 1 2.9224 0.9032 2.2091 38 1 3.7580 -1.1455 3.3286 39 1 2.0976 -1.5517 3.8246 40 1 2.6821 1.0585 4.7298 41 1 2.5696 0.8977 7.4177 42 1 4.1147 2.2219 6.0009 43 1 5.4804 1.2270 6.5602 44 1 3.6817 2.9385 8.3354 45 1 5.3421 3.3462 7.8394 46 1 6.1794 1.2979 8.9574 47 1 5.3112 2.3437 10.1070 48 1 4.6345 -0.0265 10.3747 49 1 3.2688 0.9686 9.8158 50 1 5.0675 -0.7429 8.0403 51 1 3.4071 -1.1507 8.5362 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102643289.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:36 Heat of formation + Delta-G solvation = -55.387055 kcal Electronic energy + Delta-G solvation = -25814.768189 eV Core-core repulsion = 22326.768552 eV Total energy + Delta-G solvation = -3487.999638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.30443 -38.32163 -37.70034 -35.21991 -33.26419 -31.85948 -31.05233 -30.76610 -30.48739 -26.87727 -25.65926 -24.45826 -23.41527 -22.83719 -21.94549 -20.67373 -19.96254 -19.59917 -19.17460 -17.22610 -16.83220 -16.07296 -15.76167 -15.25258 -15.01683 -14.56176 -14.43378 -14.31129 -14.07592 -13.74426 -13.43471 -12.96548 -12.93161 -12.75809 -12.65399 -12.51085 -12.02083 -11.99689 -11.65166 -11.56332 -11.48205 -11.46028 -11.10684 -10.99514 -10.95459 -10.82011 -10.75279 -10.72566 -10.43938 -10.10051 -9.93288 -9.82738 -9.71498 -9.66496 -9.28044 -9.05136 -8.61526 -6.78334 -5.61581 -3.02928 2.59716 3.13690 3.42135 3.47024 3.48907 4.31540 4.35958 4.40341 4.52154 4.84598 4.85492 4.89570 4.99139 5.06309 5.12852 5.13576 5.17873 5.27124 5.31624 5.47635 5.49964 5.56393 5.59089 5.67925 5.69870 5.73531 5.76818 5.80493 5.84564 5.89195 5.97059 5.99485 6.01239 6.12605 6.17715 6.27333 6.28779 6.35267 6.44333 6.58393 6.64541 6.72738 6.86268 7.05289 7.45543 7.58539 7.67693 7.90363 8.19219 8.40629 9.26485 9.87477 10.53035 11.42101 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.020249 B = 0.002483 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.461783 B =11275.737476 C =11957.257433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.068 0.932 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.220 4.220 7 H 0.076 0.924 8 C -0.013 4.013 9 N -0.923 5.923 10 Si 0.914 3.086 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.140 3.860 15 C -0.092 4.092 16 H 0.072 0.928 17 C -0.115 4.115 18 C 0.116 3.884 19 N -0.729 5.729 20 C 0.512 3.488 21 O -0.540 6.540 22 C -0.106 4.106 23 C -0.112 4.112 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.100 4.100 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.105 0.895 32 H 0.011 0.989 33 H 0.251 0.749 34 H 0.022 0.978 35 H 0.019 0.981 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.398 0.602 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.070 0.930 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 9.007 23.476 25.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.086 0.914 4 C 0.034 3.966 5 N -0.331 5.331 6 C -0.348 4.348 7 H 0.094 0.906 8 C -0.208 4.208 9 N -0.572 5.572 10 Si 0.744 3.256 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.014 3.986 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.153 4.153 18 C -0.007 4.007 19 N -0.380 5.380 20 C 0.298 3.702 21 O -0.417 6.417 22 C -0.127 4.127 23 C -0.149 4.149 24 C -0.155 4.155 25 C -0.160 4.160 26 C -0.157 4.157 27 C -0.138 4.138 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.122 0.878 32 H 0.029 0.971 33 H 0.062 0.938 34 H 0.040 0.960 35 H 0.037 0.963 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.232 0.768 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.080 0.920 50 H 0.089 0.911 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.461 8.123 23.274 24.773 hybrid contribution 0.538 0.115 -0.698 0.889 sum -1.923 8.238 22.576 24.109 Atomic orbital electron populations 1.21633 0.95786 1.01327 1.00330 1.22631 0.94357 0.99321 0.97120 0.91405 1.21975 0.84093 0.95833 0.94742 1.44510 1.10511 1.78944 0.99182 1.19094 0.91049 1.37451 0.87248 0.90574 1.24782 0.97288 1.02150 0.96608 1.69806 1.22410 1.54041 1.10946 0.86081 0.81276 0.77839 0.80381 1.21663 1.21681 1.20725 1.21359 0.93731 0.97206 0.86325 1.22142 0.98107 0.97620 0.93328 0.90947 1.21775 1.00883 0.98656 0.94034 1.21498 1.01966 0.93380 0.83817 1.46123 1.66616 1.13870 1.11430 1.20682 0.76650 0.88481 0.84343 1.90709 1.49321 1.17280 1.84408 1.21360 1.01236 0.96279 0.93821 1.21541 0.99618 0.95538 0.98252 1.21525 1.01435 0.97763 0.94778 1.21573 0.99199 0.97151 0.98088 1.21561 0.99704 0.96848 0.97599 1.21345 1.02247 0.97266 0.92909 0.93865 0.92905 0.93021 0.87777 0.97071 0.93813 0.96038 0.96313 0.91700 0.91283 0.91018 0.91635 0.76780 0.88708 0.91390 0.91226 0.91777 0.91608 0.91833 0.92011 0.91711 0.91992 0.91138 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.31 37.16 0.35 -1.69 16 2 C -0.11 -2.11 3.09 -88.47 -0.27 -2.38 16 3 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 4 C 0.16 3.86 5.36 -2.53 -0.01 3.85 16 5 N -0.61 -15.84 3.39 -170.07 -0.58 -16.42 16 6 C -0.22 -6.27 10.27 -15.06 -0.15 -6.42 16 7 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 8 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 9 N -0.92 -27.23 10.09 55.49 0.56 -26.67 16 10 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.14 2.96 5.99 -3.06 -0.02 2.95 16 15 C -0.09 -1.57 2.45 -88.78 -0.22 -1.78 16 16 H 0.07 1.21 8.04 -51.93 -0.42 0.80 16 17 C -0.12 -1.49 4.71 -26.73 -0.13 -1.62 16 18 C 0.12 1.53 5.52 -4.04 -0.02 1.51 16 19 N -0.73 -7.89 5.45 -60.29 -0.33 -8.22 16 20 C 0.51 6.25 7.15 -10.99 -0.08 6.17 16 21 O -0.54 -8.97 15.98 5.56 0.09 -8.88 16 22 C -0.11 -0.90 2.53 -91.77 -0.23 -1.13 16 23 C -0.11 -0.81 5.10 -26.73 -0.14 -0.95 16 24 C -0.12 -0.70 5.92 -26.73 -0.16 -0.86 16 25 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 26 C -0.12 -0.80 5.92 -26.73 -0.16 -0.95 16 27 C -0.10 -0.89 4.49 -26.73 -0.12 -1.01 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.10 2.86 5.87 -51.93 -0.30 2.56 16 32 H 0.01 0.29 7.98 -51.93 -0.41 -0.12 16 33 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.02 0.46 7.75 -51.93 -0.40 0.05 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 38 H 0.07 1.10 7.49 -51.93 -0.39 0.71 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.40 3.16 7.89 -40.82 -0.32 2.84 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.43 7.56 -51.93 -0.39 0.04 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 51 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 389.98 15.07 5.88 5.88 Total: -1.00 -32.56 389.98 -10.80 -43.36 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -9.78 Total: -0.75 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -1.62 Total: -5.71 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.35 Total: -51.31 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.56 -10.80 -43.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102643289.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.023 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds