Wall clock time and date at job start Fri Apr 10 2020 22:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.88941 * 2 1 4 4 C 1.54912 * 111.00381 * 236.11270 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.91502 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47028 * 60.00888 * 10 8 6 12 12 H 1.48503 * 109.46851 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47412 * 300.00497 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.67030 * 96.52509 * 15 14 5 17 17 C 1.53002 * 110.84636 * 219.66998 * 15 14 5 18 18 C 1.52998 * 109.47515 * 288.69230 * 17 15 14 19 19 N 1.46499 * 109.47243 * 180.02562 * 18 17 15 20 20 C 1.34777 * 119.99790 * 180.02562 * 19 18 17 21 21 O 1.21278 * 120.00225 * 359.97438 * 20 19 18 22 22 C 1.50704 * 119.99643 * 179.97438 * 20 19 18 23 23 C 1.53778 * 113.61293 * 279.13320 * 22 20 19 24 24 C 1.53952 * 87.01910 * 220.05277 * 23 22 20 25 25 C 1.53000 * 113.53491 * 270.81011 * 24 23 22 26 26 C 1.53002 * 113.66843 * 139.93626 * 24 23 22 27 27 C 1.53778 * 87.11320 * 25.36399 * 24 23 22 28 28 H 1.09005 * 109.46589 * 182.43061 * 1 2 3 29 29 H 1.08990 * 109.47291 * 302.42894 * 1 2 3 30 30 H 1.09000 * 109.47086 * 62.43700 * 1 2 3 31 31 H 1.08998 * 110.36455 * 86.08226 * 4 2 1 32 32 H 1.08995 * 110.37228 * 323.75362 * 4 2 1 33 33 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 34 34 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 35 35 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 36 36 H 1.09004 * 109.46957 * 48.69868 * 17 15 14 37 37 H 1.09005 * 109.47022 * 168.68986 * 17 15 14 38 38 H 1.09005 * 109.47010 * 300.00334 * 18 17 15 39 39 H 1.08992 * 109.47010 * 59.99637 * 18 17 15 40 40 H 0.97000 * 120.00023 * 359.97438 * 19 18 17 41 41 H 1.08990 * 112.85098 * 50.32990 * 22 20 19 42 42 H 1.09002 * 113.61656 * 334.57004 * 23 22 20 43 43 H 1.08998 * 113.61433 * 105.47137 * 23 22 20 44 44 H 1.09001 * 109.47562 * 157.49648 * 25 24 23 45 45 H 1.09002 * 109.47676 * 277.49757 * 25 24 23 46 46 H 1.09000 * 109.47319 * 37.49807 * 25 24 23 47 47 H 1.09002 * 109.46995 * 322.43751 * 26 24 23 48 48 H 1.08993 * 109.47217 * 82.43871 * 26 24 23 49 49 H 1.09006 * 109.47076 * 202.43839 * 26 24 23 50 50 H 1.09001 * 113.61010 * 220.09416 * 27 24 23 51 51 H 1.08996 * 113.61749 * 89.19029 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0852 -0.8063 -1.2005 5 7 3.4271 -1.2428 -0.7736 6 6 4.4640 -1.5662 -1.6075 7 1 5.4139 -1.8723 -1.1946 8 6 4.2961 -1.4952 -2.9837 9 7 3.1404 -1.1165 -3.4869 10 14 5.7108 -1.9356 -4.1212 11 1 6.1186 -3.3433 -3.8819 12 1 5.2781 -1.7784 -5.5330 13 1 6.8605 -1.0348 -3.8531 14 6 3.4658 -1.2796 0.6956 15 6 2.0861 -0.8083 1.2020 16 1 1.4451 -1.6619 1.4225 17 6 2.2350 0.0868 2.4339 18 6 2.6651 -0.7618 3.6321 19 7 2.8070 0.0952 4.8117 20 6 3.1808 -0.4386 5.9914 21 8 3.3993 -1.6285 6.0766 22 6 3.3273 0.4431 7.2048 23 6 4.6630 1.2034 7.2561 24 6 4.6802 0.9093 8.7672 25 6 3.9793 1.9799 9.6059 26 6 6.0645 0.5426 9.3059 27 6 3.7953 -0.3105 8.4609 28 1 -0.3633 -1.0268 0.0436 29 1 -0.3633 0.5510 0.8673 30 1 -0.3633 0.4755 -0.9110 31 1 2.1560 -0.1714 -2.0837 32 1 1.4519 -1.6700 -1.4029 33 1 3.0232 -1.0665 -4.4484 34 1 3.6601 -2.2968 1.0360 35 1 4.2424 -0.6088 1.0630 36 1 2.9888 0.8498 2.2396 37 1 1.2806 0.5663 2.6521 38 1 1.9112 -1.5248 3.8263 39 1 3.6193 -1.2413 3.4139 40 1 2.6326 1.0470 4.7436 41 1 2.4573 1.0772 7.3748 42 1 5.4663 0.7124 6.7066 43 1 4.5718 2.2630 7.0175 44 1 3.6742 1.5516 10.5606 45 1 4.6640 2.8095 9.7821 46 1 3.1002 2.3415 9.0725 47 1 6.5914 -0.0650 8.5701 48 1 6.6321 1.4528 9.4990 49 1 5.9561 -0.0214 10.2323 50 1 3.0045 -0.4712 9.1937 51 1 4.3608 -1.2161 8.2415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102937915.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:49 Heat of formation + Delta-G solvation = -20.276673 kcal Electronic energy + Delta-G solvation = -25636.938872 eV Core-core repulsion = 22150.461735 eV Total energy + Delta-G solvation = -3486.477137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.75465 -38.67535 -37.96452 -35.18021 -33.23398 -31.61139 -30.80150 -30.57059 -27.79114 -27.03875 -26.02771 -25.70000 -24.62944 -23.38130 -21.89582 -20.35540 -19.62475 -19.17641 -18.57218 -17.26768 -16.82428 -15.94141 -15.82378 -15.26554 -14.94840 -14.51641 -14.43164 -14.23161 -13.86498 -13.59227 -13.26675 -13.12471 -13.00919 -12.90141 -12.77877 -12.20347 -12.07994 -11.98051 -11.91225 -11.63289 -11.50476 -11.36555 -11.13949 -11.10447 -10.99257 -10.82987 -10.71661 -10.65570 -10.43079 -10.12002 -9.92948 -9.83150 -9.70916 -9.66188 -9.27951 -9.05551 -8.61139 -6.78229 -5.61398 -3.02739 2.57862 3.15843 3.42700 3.46633 3.48082 4.07931 4.21376 4.36304 4.39409 4.52226 4.77970 4.92357 5.01633 5.07964 5.13300 5.27559 5.28238 5.32052 5.41436 5.48695 5.48821 5.51139 5.56523 5.57705 5.59270 5.66115 5.70256 5.77507 5.80196 5.84038 5.97160 6.01310 6.03497 6.16453 6.18548 6.27482 6.29388 6.36254 6.45100 6.58838 6.64404 6.72637 6.86399 7.05415 7.46896 7.58849 7.67185 7.90534 8.19932 8.40839 9.26606 9.87585 10.53287 11.42270 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.020109 B = 0.002427 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.106420 B =11533.857257 C =12425.174356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.067 0.933 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.221 4.221 7 H 0.076 0.924 8 C -0.013 4.013 9 N -0.923 5.923 10 Si 0.914 3.086 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.140 3.860 15 C -0.092 4.092 16 H 0.072 0.928 17 C -0.115 4.115 18 C 0.117 3.883 19 N -0.728 5.728 20 C 0.519 3.481 21 O -0.541 6.541 22 C -0.138 4.138 23 C -0.115 4.115 24 C -0.091 4.091 25 C -0.128 4.128 26 C -0.136 4.136 27 C -0.107 4.107 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.011 0.989 33 H 0.252 0.748 34 H 0.019 0.981 35 H 0.022 0.978 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.399 0.601 41 H 0.111 0.889 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.057 0.943 50 H 0.070 0.930 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.380 8.589 23.845 25.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.086 0.914 4 C 0.034 3.966 5 N -0.331 5.331 6 C -0.349 4.349 7 H 0.094 0.906 8 C -0.208 4.208 9 N -0.572 5.572 10 Si 0.745 3.255 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.014 3.986 15 C -0.112 4.112 16 H 0.090 0.910 17 C -0.154 4.154 18 C -0.006 4.006 19 N -0.379 5.379 20 C 0.305 3.695 21 O -0.418 6.418 22 C -0.159 4.159 23 C -0.153 4.153 24 C -0.091 4.091 25 C -0.186 4.186 26 C -0.193 4.193 27 C -0.145 4.145 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.122 0.878 32 H 0.029 0.971 33 H 0.062 0.938 34 H 0.037 0.963 35 H 0.040 0.960 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.233 0.767 41 H 0.129 0.871 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.076 0.924 50 H 0.089 0.911 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.165 7.690 23.652 24.965 hybrid contribution 0.547 0.143 -0.728 0.922 sum -1.618 7.833 22.923 24.279 Atomic orbital electron populations 1.21632 0.95790 1.01122 1.00527 1.22630 0.94344 0.99337 0.97133 0.91409 1.21967 0.84078 0.95855 0.94733 1.44504 1.10542 1.78912 0.99185 1.19046 0.90981 1.37662 0.87248 0.90631 1.24783 0.97283 1.02130 0.96606 1.69794 1.22444 1.53935 1.11037 0.86156 0.81246 0.78213 0.79926 1.21236 1.21590 1.21211 1.21371 0.93724 0.97176 0.86344 1.22150 0.98115 0.97601 0.93323 0.90973 1.21782 1.01398 0.98463 0.93716 1.21493 1.02086 0.93368 0.83694 1.46115 1.69926 1.12122 1.09732 1.20506 0.76168 0.88624 0.84242 1.90699 1.49881 1.16068 1.85149 1.22735 1.00009 0.98901 0.94274 1.23050 0.95701 1.00261 0.96242 1.21830 0.96173 0.96395 0.94711 1.21608 1.00036 0.97541 0.99380 1.21723 0.95172 1.01289 1.01120 1.22952 0.99105 0.97503 0.94956 0.93093 0.93888 0.92810 0.87766 0.97095 0.93755 0.96316 0.96031 0.91263 0.91665 0.91641 0.91131 0.76742 0.87137 0.89503 0.90638 0.92242 0.92285 0.92383 0.92330 0.92586 0.92441 0.91112 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.29 37.16 0.35 -1.70 16 2 C -0.11 -2.12 3.09 -88.47 -0.27 -2.39 16 3 H 0.07 1.25 8.05 -51.93 -0.42 0.84 16 4 C 0.16 3.87 5.36 -2.53 -0.01 3.86 16 5 N -0.61 -15.85 3.39 -170.06 -0.58 -16.43 16 6 C -0.22 -6.30 10.27 -15.06 -0.15 -6.45 16 7 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 8 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 9 N -0.92 -27.23 10.09 55.49 0.56 -26.67 16 10 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.14 2.97 6.24 -3.06 -0.02 2.95 16 15 C -0.09 -1.57 2.39 -88.78 -0.21 -1.78 16 16 H 0.07 1.22 8.01 -51.93 -0.42 0.80 16 17 C -0.12 -1.50 4.73 -26.73 -0.13 -1.63 16 18 C 0.12 1.53 5.56 -4.04 -0.02 1.51 16 19 N -0.73 -7.92 5.56 -60.30 -0.33 -8.26 16 20 C 0.52 6.33 7.35 -10.98 -0.08 6.25 16 21 O -0.54 -8.97 15.91 5.56 0.09 -8.88 16 22 C -0.14 -1.17 3.79 -90.96 -0.34 -1.52 16 23 C -0.11 -0.87 6.75 -25.83 -0.17 -1.04 16 24 C -0.09 -0.64 1.39 -153.61 -0.21 -0.85 16 25 C -0.13 -0.71 9.07 37.16 0.34 -0.37 16 26 C -0.14 -0.92 9.20 37.16 0.34 -0.58 16 27 C -0.11 -0.93 6.55 -25.92 -0.17 -1.10 16 28 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 2.87 5.87 -51.93 -0.31 2.56 16 32 H 0.01 0.29 8.04 -51.93 -0.42 -0.13 16 33 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 35 H 0.02 0.46 7.69 -51.93 -0.40 0.06 16 36 H 0.07 0.91 7.94 -51.93 -0.41 0.50 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.07 7.68 -51.93 -0.40 0.67 16 40 H 0.40 3.19 8.47 -40.82 -0.35 2.85 16 41 H 0.11 0.72 7.66 -51.93 -0.40 0.32 16 42 H 0.09 0.77 7.92 -51.93 -0.41 0.36 16 43 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 44 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.06 0.29 7.34 -51.93 -0.38 -0.09 16 47 H 0.06 0.44 7.95 -51.93 -0.41 0.03 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 51 H 0.10 1.03 7.41 -51.93 -0.38 0.64 16 LS Contribution 396.12 15.07 5.97 5.97 Total: -1.00 -32.59 396.12 -9.91 -42.50 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -9.71 Total: -0.32 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -0.88 Total: -5.31 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.35 Total: -51.36 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.59 -9.91 -42.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102937915.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.225 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds