Wall clock time and date at job start Fri Apr 10 2020 22:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.88674 * 2 1 4 4 C 1.54908 * 111.00222 * 236.12262 * 2 1 3 5 5 N 1.47426 * 104.83480 * 204.87534 * 4 2 1 6 6 C 1.36935 * 125.65095 * 204.08509 * 5 4 2 7 7 H 1.08001 * 119.99955 * 11.50619 * 6 5 4 8 8 C 1.38811 * 119.99853 * 191.49692 * 6 5 4 9 9 N 1.31621 * 120.00295 * 206.17070 * 8 6 5 10 10 Si 1.86803 * 119.99841 * 26.17539 * 8 6 5 11 11 H 1.48497 * 109.47088 * 275.72957 * 10 8 6 12 12 H 1.48499 * 109.47011 * 35.73234 * 10 8 6 13 13 H 1.48502 * 109.46918 * 155.73052 * 10 8 6 14 14 C 1.47022 * 108.69923 * 24.35526 * 5 4 2 15 15 C 1.54340 * 107.26661 * 358.58709 * 14 5 4 16 16 H 1.08995 * 110.67079 * 96.52100 * 15 14 5 17 17 C 1.53003 * 110.84892 * 219.67266 * 15 14 5 18 18 C 1.52998 * 109.47361 * 288.69215 * 17 15 14 19 19 N 1.46498 * 109.47274 * 179.97438 * 18 17 15 20 20 C 1.34773 * 120.00059 * 179.97438 * 19 18 17 21 21 O 1.21287 * 120.00160 * 0.02562 * 20 19 18 22 22 C 1.50703 * 120.00089 * 179.97438 * 20 19 18 23 23 C 1.53002 * 109.47031 * 180.02562 * 22 20 19 24 24 C 1.52997 * 109.46805 * 180.02562 * 23 22 20 25 25 C 1.52998 * 109.47079 * 180.02562 * 24 23 22 26 26 C 1.53005 * 117.49886 * 243.74739 * 25 24 23 27 27 C 1.53000 * 117.49970 * 175.08702 * 25 24 23 28 28 H 1.08991 * 109.46861 * 182.42661 * 1 2 3 29 29 H 1.09000 * 109.46110 * 302.42702 * 1 2 3 30 30 H 1.09000 * 109.47063 * 62.42276 * 1 2 3 31 31 H 1.09006 * 110.37290 * 86.03669 * 4 2 1 32 32 H 1.09004 * 110.36903 * 323.71634 * 4 2 1 33 33 H 0.96991 * 120.00246 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.88281 * 118.12776 * 14 5 4 35 35 H 1.08999 * 109.88588 * 239.29734 * 14 5 4 36 36 H 1.09008 * 109.46756 * 48.69158 * 17 15 14 37 37 H 1.08996 * 109.46968 * 168.68933 * 17 15 14 38 38 H 1.09005 * 109.46659 * 300.00288 * 18 17 15 39 39 H 1.09005 * 109.47110 * 59.99851 * 18 17 15 40 40 H 0.97000 * 119.99890 * 0.02562 * 19 18 17 41 41 H 1.08995 * 109.47156 * 300.00426 * 22 20 19 42 42 H 1.09005 * 109.47053 * 60.00244 * 22 20 19 43 43 H 1.08996 * 109.46909 * 300.00238 * 23 22 20 44 44 H 1.08996 * 109.47271 * 60.00247 * 23 22 20 45 45 H 1.09005 * 109.47515 * 299.99861 * 24 23 22 46 46 H 1.09005 * 109.47367 * 60.00106 * 24 23 22 47 47 H 1.08997 * 115.55222 * 29.41590 * 25 24 23 48 48 H 1.08996 * 117.49755 * 359.97438 * 26 25 24 49 49 H 1.09002 * 117.49987 * 145.01980 * 26 25 24 50 50 H 1.09004 * 117.49927 * 214.97661 * 27 25 24 51 51 H 1.08998 * 117.50287 * 359.97146 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8061 -1.2007 5 7 3.4275 -1.2419 -0.7743 6 6 4.4642 -1.5650 -1.6087 7 1 4.4008 -1.3365 -2.6623 8 6 5.5967 -2.1861 -1.1001 9 7 6.7545 -2.0455 -1.7102 10 14 5.4774 -3.2217 0.4500 11 1 5.5796 -2.3420 1.6420 12 1 4.1745 -3.9338 0.4705 13 1 6.5835 -4.2124 0.4697 14 6 3.4667 -1.2785 0.6949 15 6 2.0870 -0.8078 1.2018 16 1 1.4465 -1.6616 1.4226 17 6 2.2359 0.0876 2.4335 18 6 2.6670 -0.7606 3.6317 19 7 2.8101 0.0968 4.8108 20 6 3.1839 -0.4367 5.9907 21 8 3.4022 -1.6267 6.0761 22 6 3.3317 0.4454 7.2036 23 6 3.7626 -0.4029 8.4017 24 6 3.9120 0.4926 9.6332 25 6 4.3436 -0.3556 10.8312 26 6 3.3774 -0.4512 12.0137 27 6 4.6595 0.3758 12.1374 28 1 -0.3633 -1.0267 0.0435 29 1 -0.3632 0.5511 0.8675 30 1 -0.3633 0.4758 -0.9109 31 1 2.1553 -0.1713 -2.0840 32 1 1.4522 -1.6702 -1.4027 33 1 7.5457 -2.4798 -1.3550 34 1 3.6617 -2.2955 1.0354 35 1 4.2431 -0.6072 1.0619 36 1 2.9894 0.8509 2.2388 37 1 1.2815 0.5665 2.6520 38 1 1.9135 -1.5240 3.8262 39 1 3.6214 -1.2396 3.4131 40 1 2.6351 1.0484 4.7426 41 1 4.0858 1.2078 7.0086 42 1 2.3777 0.9254 7.4221 43 1 3.0088 -1.1656 8.5968 44 1 4.7166 -0.8826 8.1830 45 1 4.6657 1.2556 9.4384 46 1 2.9578 0.9720 9.8518 47 1 4.9362 -1.2387 10.5929 48 1 2.4345 0.0904 11.9383 49 1 3.3347 -1.3972 12.5536 50 1 5.4599 -0.0264 12.7586 51 1 4.5605 1.4613 12.1432 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103349787.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:21 Heat of formation + Delta-G solvation = -14.927514 kcal Electronic energy + Delta-G solvation = -25199.494800 eV Core-core repulsion = 21713.249620 eV Total energy + Delta-G solvation = -3486.245180 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.84605 -38.54910 -38.00965 -35.35647 -34.01526 -33.30891 -31.59178 -30.98075 -28.70526 -26.97029 -26.10101 -24.17470 -22.81029 -22.52695 -21.85280 -20.80548 -20.52723 -20.04422 -19.53370 -17.13297 -16.92506 -16.24267 -15.96954 -15.80017 -15.57945 -14.89143 -14.65744 -14.57331 -13.92881 -13.78500 -13.55650 -13.20457 -13.12710 -12.71687 -12.62486 -12.46071 -12.16715 -12.00370 -11.92598 -11.88114 -11.72707 -11.41465 -11.37479 -11.25552 -11.11378 -10.92939 -10.79228 -10.56490 -10.41641 -10.21362 -10.19889 -10.10454 -9.80636 -9.73526 -9.19069 -9.07495 -8.60026 -7.06013 -5.90943 -3.14849 2.60390 3.10579 3.41321 3.44551 3.54623 3.56203 4.24820 4.49644 4.56508 4.59927 4.63205 4.76835 4.79309 4.87959 4.94066 4.98856 5.00371 5.11804 5.24942 5.27452 5.31521 5.36894 5.40763 5.45628 5.46967 5.49704 5.55635 5.61054 5.74439 5.77674 5.84862 5.86618 5.87553 5.96237 5.96511 6.07746 6.11289 6.15251 6.17646 6.25175 6.41521 6.42280 6.52283 6.66662 6.83451 6.87397 7.43549 7.71887 8.18651 8.33905 8.87481 9.74388 10.22416 11.25056 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.016500 B = 0.002526 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.547529 B =11081.611478 C =12379.826701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 H 0.078 0.922 4 C 0.139 3.861 5 N -0.611 5.611 6 C -0.242 4.242 7 H 0.094 0.906 8 C 0.019 3.981 9 N -0.906 5.906 10 Si 0.884 3.116 11 H -0.286 1.286 12 H -0.281 1.281 13 H -0.305 1.305 14 C 0.122 3.878 15 C -0.093 4.093 16 H 0.076 0.924 17 C -0.116 4.116 18 C 0.114 3.886 19 N -0.731 5.731 20 C 0.507 3.493 21 O -0.540 6.540 22 C -0.140 4.140 23 C -0.102 4.102 24 C -0.089 4.089 25 C -0.152 4.152 26 C -0.182 4.182 27 C -0.184 4.184 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.024 0.976 33 H 0.262 0.738 34 H 0.026 0.974 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.399 0.601 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.105 0.895 48 H 0.093 0.907 49 H 0.092 0.908 50 H 0.092 0.908 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.556 9.747 22.357 26.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.120 4.120 3 H 0.096 0.904 4 C 0.013 3.987 5 N -0.337 5.337 6 C -0.369 4.369 7 H 0.112 0.888 8 C -0.179 4.179 9 N -0.550 5.550 10 Si 0.716 3.284 11 H -0.213 1.213 12 H -0.208 1.208 13 H -0.233 1.233 14 C -0.003 4.003 15 C -0.113 4.113 16 H 0.095 0.905 17 C -0.154 4.154 18 C -0.010 4.010 19 N -0.383 5.383 20 C 0.293 3.707 21 O -0.417 6.417 22 C -0.180 4.180 23 C -0.140 4.140 24 C -0.126 4.126 25 C -0.170 4.170 26 C -0.219 4.219 27 C -0.221 4.221 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.233 0.767 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.123 0.877 48 H 0.112 0.888 49 H 0.110 0.890 50 H 0.111 0.889 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.137 8.806 22.316 26.449 hybrid contribution 0.017 -0.325 0.809 0.872 sum -11.120 8.481 23.124 27.024 Atomic orbital electron populations 1.21688 0.95099 1.01593 1.01102 1.22369 0.94626 0.99388 0.95644 0.90370 1.21637 0.86544 0.95468 0.95011 1.44810 1.09304 1.79359 1.00275 1.18659 0.92168 1.33787 0.92254 0.88808 1.24798 0.94939 1.00541 0.97633 1.69897 0.98146 1.44629 1.42304 0.87016 0.75835 0.81465 0.84106 1.21326 1.20822 1.23290 1.21745 0.94483 0.98155 0.85911 1.22170 0.97914 0.97726 0.93478 0.90520 1.21770 1.01669 0.98449 0.93538 1.21492 1.02319 0.93398 0.83763 1.46086 1.70361 1.12085 1.09743 1.20758 0.76417 0.89019 0.84482 1.90728 1.49539 1.16261 1.85139 1.21693 1.03754 0.99101 0.93494 1.21319 1.03020 0.97693 0.91965 1.21204 1.01110 0.97334 0.92997 1.22361 1.03386 1.01744 0.89527 1.23047 0.94344 1.02012 1.02499 1.22979 0.99481 0.98957 1.00665 0.92742 0.93088 0.92705 0.93415 0.95858 0.92802 0.95647 0.94192 0.90879 0.91304 0.91503 0.91071 0.76702 0.88885 0.89029 0.91060 0.91017 0.91483 0.91817 0.87663 0.88847 0.88974 0.88940 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.30 37.16 0.35 -1.28 16 2 C -0.10 -1.54 3.09 -88.47 -0.27 -1.81 16 3 H 0.08 1.17 8.05 -51.93 -0.42 0.76 16 4 C 0.14 2.73 6.70 -2.53 -0.02 2.71 16 5 N -0.61 -15.06 3.28 -170.06 -0.56 -15.62 16 6 C -0.24 -7.02 10.57 -15.06 -0.16 -7.18 16 7 H 0.09 2.85 8.06 -52.49 -0.42 2.42 16 8 C 0.02 0.57 5.43 -17.43 -0.09 0.48 16 9 N -0.91 -28.58 13.97 55.49 0.78 -27.81 16 10 Si 0.88 23.81 24.29 -169.99 -4.13 19.68 16 11 H -0.29 -7.49 6.72 56.52 0.38 -7.11 16 12 H -0.28 -7.51 6.74 56.52 0.38 -7.13 16 13 H -0.30 -8.30 7.11 56.52 0.40 -7.90 16 14 C 0.12 2.69 3.94 -3.06 -0.01 2.68 16 15 C -0.09 -1.51 2.39 -88.78 -0.21 -1.72 16 16 H 0.08 1.21 8.01 -51.93 -0.42 0.79 16 17 C -0.12 -1.48 4.73 -26.73 -0.13 -1.60 16 18 C 0.11 1.59 5.56 -4.04 -0.02 1.56 16 19 N -0.73 -8.22 5.56 -60.29 -0.33 -8.56 16 20 C 0.51 6.40 7.83 -10.99 -0.09 6.31 16 21 O -0.54 -9.40 15.98 5.55 0.09 -9.31 16 22 C -0.14 -1.14 5.70 -27.88 -0.16 -1.30 16 23 C -0.10 -0.91 4.46 -26.73 -0.12 -1.03 16 24 C -0.09 -0.62 5.49 -26.73 -0.15 -0.77 16 25 C -0.15 -1.13 5.73 -90.62 -0.52 -1.65 16 26 C -0.18 -1.23 10.18 -26.69 -0.27 -1.50 16 27 C -0.18 -1.20 10.25 -26.69 -0.27 -1.47 16 28 H 0.05 0.65 8.11 -51.93 -0.42 0.23 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.02 0.46 8.04 -51.93 -0.42 0.04 16 33 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 34 H 0.03 0.63 3.73 -51.93 -0.19 0.44 16 35 H 0.04 0.93 7.38 -51.93 -0.38 0.55 16 36 H 0.07 0.94 7.94 -51.92 -0.41 0.53 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.24 7.68 -51.93 -0.40 0.84 16 40 H 0.40 3.10 8.47 -40.82 -0.35 2.76 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 44 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.39 7.88 -51.93 -0.41 -0.02 16 47 H 0.11 0.84 8.08 -51.93 -0.42 0.42 16 48 H 0.09 0.58 8.03 -51.93 -0.42 0.16 16 49 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 51 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 398.54 15.07 6.01 6.01 Total: -1.00 -34.88 398.54 -10.04 -44.92 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -9.74 Total: -1.75 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.15 Total: -7.58 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.12 Total: -51.98 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -4.13 Total: 19.68 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.88 -10.04 -44.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103349787.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.997 kcal (2) G-P(sol) polarization free energy of solvation -34.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds