Wall clock time and date at job start Fri Apr 10 2020 22:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 110.64266 * 2 1 4 4 C 1.54318 * 110.72135 * 236.65932 * 2 1 3 5 5 N 1.47023 * 107.27444 * 219.44633 * 4 2 1 6 6 C 1.36931 * 125.65140 * 178.97533 * 5 4 2 7 7 H 1.08002 * 120.00184 * 179.97438 * 6 5 4 8 8 C 1.38820 * 120.00013 * 359.97438 * 6 5 4 9 9 N 1.31619 * 119.99740 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99873 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47298 * 90.00028 * 10 8 6 12 12 H 1.48508 * 109.46734 * 209.99838 * 10 8 6 13 13 H 1.48502 * 109.47478 * 329.99715 * 10 8 6 14 14 C 1.47470 * 108.71793 * 358.97682 * 5 4 2 15 15 C 1.54902 * 104.81643 * 24.07191 * 14 5 4 16 16 H 1.09004 * 111.00542 * 81.13305 * 15 14 5 17 17 C 1.52997 * 111.00875 * 204.95157 * 15 14 5 18 18 C 1.53004 * 109.47000 * 290.41516 * 17 15 14 19 19 N 1.46499 * 109.47198 * 179.97438 * 18 17 15 20 20 C 1.34777 * 119.99665 * 180.27868 * 19 18 17 21 21 O 1.21283 * 119.99990 * 359.71991 * 20 19 18 22 22 C 1.50698 * 119.99538 * 179.72653 * 20 19 18 23 23 C 1.53001 * 109.47207 * 299.99218 * 22 20 19 24 24 C 1.52995 * 109.47490 * 59.99635 * 22 20 19 25 25 C 1.52999 * 109.47004 * 179.97438 * 22 20 19 26 26 C 1.52994 * 117.50234 * 248.74668 * 25 22 20 27 27 C 1.53005 * 117.50059 * 180.08336 * 25 22 20 28 28 H 1.09005 * 109.47058 * 296.86266 * 1 2 3 29 29 H 1.09001 * 109.47061 * 56.85768 * 1 2 3 30 30 H 1.09003 * 109.47207 * 176.86235 * 1 2 3 31 31 H 1.09006 * 109.88164 * 338.86160 * 4 2 1 32 32 H 1.08998 * 109.88331 * 100.03015 * 4 2 1 33 33 H 0.97001 * 120.00026 * 180.02562 * 9 8 6 34 34 H 1.09000 * 110.34586 * 265.24593 * 14 5 4 35 35 H 1.09004 * 110.40296 * 142.91889 * 14 5 4 36 36 H 1.08995 * 109.47672 * 170.41847 * 17 15 14 37 37 H 1.09006 * 109.46819 * 50.41277 * 17 15 14 38 38 H 1.09009 * 109.46730 * 59.99606 * 18 17 15 39 39 H 1.08998 * 109.46846 * 300.00150 * 18 17 15 40 40 H 0.97001 * 119.99790 * 359.97438 * 19 18 17 41 41 H 1.09001 * 109.47038 * 60.00421 * 23 22 20 42 42 H 1.08995 * 109.47475 * 180.02562 * 23 22 20 43 43 H 1.09001 * 109.47406 * 300.00436 * 23 22 20 44 44 H 1.08995 * 109.47139 * 60.00165 * 24 22 20 45 45 H 1.09003 * 109.47199 * 179.97438 * 24 22 20 46 46 H 1.09001 * 109.46983 * 299.99719 * 24 22 20 47 47 H 1.09008 * 115.54874 * 34.41606 * 25 22 20 48 48 H 1.09003 * 117.49858 * 359.97438 * 26 25 22 49 49 H 1.09001 * 117.50349 * 145.02029 * 26 25 22 50 50 H 1.09000 * 117.49785 * 214.98100 * 27 25 22 51 51 H 1.08995 * 117.49629 * 359.97438 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0199 0.0000 4 6 2.0760 -0.7933 -1.2058 5 7 3.2445 -1.5521 -0.7362 6 6 4.0042 -2.3996 -1.4975 7 1 4.8467 -2.9124 -1.0572 8 6 3.6916 -2.5998 -2.8351 9 7 2.6647 -1.9754 -3.3715 10 14 4.7276 -3.7566 -3.8733 11 1 4.1672 -5.1294 -3.7937 12 1 4.7161 -3.2983 -5.2859 13 1 6.1233 -3.7615 -3.3659 14 6 3.4631 -1.2495 0.6904 15 6 2.0789 -0.7934 1.2153 16 1 1.4447 -1.6508 1.4408 17 6 2.2276 0.1122 2.4395 18 6 2.7269 -0.7134 3.6269 19 7 2.8699 0.1538 4.7990 20 6 3.3048 -0.3586 5.9672 21 8 3.5729 -1.5386 6.0496 22 6 3.4578 0.5347 7.1712 23 6 4.4625 1.6452 6.8580 24 6 2.1039 1.1556 7.5210 25 6 3.9618 -0.2899 8.3573 26 6 2.9961 -0.5151 9.5224 27 6 4.1808 0.4408 9.6837 28 1 -0.3633 0.4644 0.9168 29 1 -0.3633 0.5619 -0.8605 30 1 -0.3634 -1.0261 -0.0563 31 1 1.3129 -1.4786 -1.5749 32 1 2.3742 -0.1059 -1.9974 33 1 2.4460 -2.1155 -4.3061 34 1 4.1935 -0.4479 0.8002 35 1 3.7951 -2.1416 1.2216 36 1 1.2617 0.5536 2.6845 37 1 2.9440 0.9041 2.2206 38 1 3.6930 -1.1549 3.3819 39 1 2.0106 -1.5053 3.8456 40 1 2.6559 1.0975 4.7330 41 1 4.1031 2.2327 6.0131 42 1 4.5736 2.2911 7.7289 43 1 5.4271 1.2029 6.6088 44 1 1.3882 0.3645 7.7442 45 1 2.2145 1.8014 8.3921 46 1 1.7445 1.7431 6.6761 47 1 4.6486 -1.0992 8.1092 48 1 2.0018 -0.0755 9.4442 49 1 3.0478 -1.4724 10.0412 50 1 5.0113 0.1120 10.3083 51 1 3.9661 1.5091 9.7111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103350480.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:24 Heat of formation + Delta-G solvation = -10.289421 kcal Electronic energy + Delta-G solvation = -25984.301250 eV Core-core repulsion = 22498.257193 eV Total energy + Delta-G solvation = -3486.044057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.55290 -38.35236 -37.72368 -35.22691 -33.67631 -32.96808 -30.91563 -30.58211 -27.85258 -26.88352 -25.66381 -24.81721 -23.99529 -22.51132 -22.13652 -21.33310 -19.85982 -19.24293 -18.77795 -17.35988 -16.81638 -16.33551 -15.66548 -15.30586 -14.96859 -14.83483 -14.39155 -14.11859 -13.87491 -13.63314 -13.11381 -13.09228 -12.95159 -12.61301 -12.50538 -12.49280 -12.23380 -11.92817 -11.82880 -11.68182 -11.42896 -11.35369 -11.19946 -11.09224 -11.02816 -10.74257 -10.73474 -10.61149 -10.28209 -10.03888 -9.90020 -9.84746 -9.72861 -9.60035 -9.42474 -9.05269 -8.55600 -6.77145 -5.66474 -2.99311 2.60030 3.05378 3.43177 3.48143 3.49949 3.58170 4.21530 4.39391 4.54125 4.57136 4.71386 4.77445 4.88916 4.93825 5.11610 5.13133 5.19606 5.30229 5.33704 5.37857 5.45628 5.49817 5.52321 5.55984 5.60745 5.63373 5.71731 5.77432 5.80866 5.83645 5.86160 5.96111 6.03605 6.05004 6.12559 6.24530 6.27859 6.38259 6.43409 6.54551 6.66491 6.69386 6.82829 7.04668 7.44897 7.62182 7.69409 7.88628 8.18662 8.31512 9.27661 9.88059 10.54712 11.45228 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.023472 B = 0.002522 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.643307 B =11098.034537 C =11853.006365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.063 0.937 4 C 0.183 3.817 5 N -0.607 5.607 6 C -0.225 4.225 7 H 0.077 0.923 8 C -0.010 4.010 9 N -0.923 5.923 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.140 3.860 15 C -0.095 4.095 16 H 0.076 0.924 17 C -0.115 4.115 18 C 0.117 3.883 19 N -0.728 5.728 20 C 0.522 3.478 21 O -0.536 6.536 22 C -0.052 4.052 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.130 4.130 26 C -0.182 4.182 27 C -0.178 4.178 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.251 0.749 34 H 0.017 0.983 35 H 0.037 0.963 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.398 0.602 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.115 0.885 48 H 0.099 0.901 49 H 0.092 0.908 50 H 0.093 0.907 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.542 10.822 23.276 25.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.134 4.134 3 H 0.082 0.918 4 C 0.059 3.941 5 N -0.333 5.333 6 C -0.354 4.354 7 H 0.095 0.905 8 C -0.206 4.206 9 N -0.571 5.571 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.013 3.987 15 C -0.115 4.115 16 H 0.094 0.906 17 C -0.154 4.154 18 C -0.006 4.006 19 N -0.379 5.379 20 C 0.307 3.693 21 O -0.412 6.412 22 C -0.055 4.055 23 C -0.196 4.196 24 C -0.202 4.202 25 C -0.148 4.148 26 C -0.219 4.219 27 C -0.215 4.215 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.034 0.966 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.232 0.768 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.133 0.867 48 H 0.117 0.883 49 H 0.111 0.889 50 H 0.112 0.888 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.334 9.869 23.076 25.206 hybrid contribution 0.422 -0.184 -0.727 0.861 sum -1.912 9.685 22.349 24.432 Atomic orbital electron populations 1.21679 0.95597 1.01542 1.00220 1.22483 0.94927 0.98908 0.97049 0.91815 1.21204 0.89103 0.93023 0.90794 1.44489 1.32554 1.51427 1.04867 1.19076 1.07474 1.17531 0.91312 0.90517 1.24797 0.98509 1.00408 0.96915 1.69970 1.28854 1.45668 1.12595 0.86127 0.79555 0.80423 0.79735 1.21642 1.21725 1.20730 1.21619 0.93332 0.97051 0.86666 1.22328 0.98865 0.97566 0.92750 0.90578 1.21736 1.01070 0.98568 0.93988 1.21490 1.02090 0.93200 0.83775 1.46078 1.68133 1.12971 1.10720 1.20398 0.76479 0.88482 0.83935 1.90703 1.49453 1.16717 1.84336 1.20256 0.97316 0.95188 0.92724 1.21835 0.98702 0.96910 1.02132 1.21996 0.95021 1.00898 1.02249 1.22058 1.03424 1.01558 0.87797 1.23140 0.95419 1.01086 1.02210 1.22984 1.00620 0.98152 0.99778 0.93867 0.93016 0.92769 0.93459 0.94271 0.93856 0.96560 0.94483 0.91705 0.91394 0.91022 0.91536 0.76836 0.92006 0.91333 0.91799 0.91580 0.91322 0.91949 0.86678 0.88256 0.88917 0.88811 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.16 37.16 0.34 -1.72 16 2 C -0.11 -2.07 3.02 -88.78 -0.27 -2.34 16 3 H 0.06 1.10 8.04 -51.93 -0.42 0.68 16 4 C 0.18 4.47 4.97 -3.07 -0.02 4.46 16 5 N -0.61 -15.81 3.40 -170.04 -0.58 -16.39 16 6 C -0.23 -6.44 10.28 -15.06 -0.15 -6.60 16 7 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 8 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 9 N -0.92 -27.53 10.31 55.49 0.57 -26.96 16 10 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.14 2.90 6.04 -2.51 -0.02 2.89 16 15 C -0.10 -1.60 2.48 -88.47 -0.22 -1.82 16 16 H 0.08 1.32 8.05 -51.93 -0.42 0.91 16 17 C -0.12 -1.44 4.84 -26.73 -0.13 -1.57 16 18 C 0.12 1.51 5.55 -4.04 -0.02 1.49 16 19 N -0.73 -7.73 5.34 -60.29 -0.32 -8.05 16 20 C 0.52 6.35 6.48 -10.99 -0.07 6.28 16 21 O -0.54 -8.89 15.65 5.55 0.09 -8.80 16 22 C -0.05 -0.45 0.72 -155.66 -0.11 -0.56 16 23 C -0.14 -0.97 8.21 37.16 0.31 -0.66 16 24 C -0.14 -0.95 6.97 37.16 0.26 -0.70 16 25 C -0.13 -1.20 4.75 -90.62 -0.43 -1.63 16 26 C -0.18 -1.44 9.57 -26.69 -0.26 -1.70 16 27 C -0.18 -1.24 9.39 -26.69 -0.25 -1.49 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.88 8.06 -51.93 -0.42 0.46 16 31 H 0.05 1.28 7.00 -51.93 -0.36 0.91 16 32 H 0.04 1.06 7.51 -51.93 -0.39 0.67 16 33 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.02 0.34 7.96 -51.93 -0.41 -0.07 16 35 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.83 8.04 -51.93 -0.42 0.41 16 38 H 0.07 1.06 7.60 -51.92 -0.39 0.67 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.40 3.09 7.31 -40.82 -0.30 2.80 16 41 H 0.06 0.37 7.56 -51.93 -0.39 -0.03 16 42 H 0.07 0.38 7.29 -51.93 -0.38 0.01 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.49 6.97 -51.93 -0.36 0.13 16 45 H 0.07 0.36 7.07 -51.93 -0.37 0.00 16 46 H 0.06 0.34 7.56 -51.93 -0.39 -0.05 16 47 H 0.12 1.32 7.47 -51.92 -0.39 0.93 16 48 H 0.10 0.70 5.85 -51.93 -0.30 0.40 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.09 0.54 7.07 -51.93 -0.37 0.17 16 LS Contribution 391.12 15.07 5.89 5.89 Total: -1.00 -33.03 391.12 -9.91 -42.95 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -9.41 Total: -0.14 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -1.14 Total: -6.05 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.33 Total: -51.40 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.03 -9.91 -42.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103350480.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.658 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds