Wall clock time and date at job start Fri Apr 10 2020 22:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 110.64266 * 2 1 4 4 C 1.54318 * 110.72135 * 236.65932 * 2 1 3 5 5 N 1.47023 * 107.27444 * 219.44633 * 4 2 1 6 6 C 1.36931 * 125.65140 * 178.97533 * 5 4 2 7 7 H 1.08002 * 120.00184 * 179.97438 * 6 5 4 8 8 C 1.38820 * 120.00013 * 359.97438 * 6 5 4 9 9 N 1.31619 * 119.99740 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99873 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47298 * 90.00028 * 10 8 6 12 12 H 1.48508 * 109.46734 * 209.99838 * 10 8 6 13 13 H 1.48502 * 109.47478 * 329.99715 * 10 8 6 14 14 C 1.47470 * 108.71793 * 358.97682 * 5 4 2 15 15 C 1.54902 * 104.81643 * 24.07191 * 14 5 4 16 16 H 1.09004 * 111.00542 * 81.13305 * 15 14 5 17 17 C 1.52997 * 111.00875 * 204.95157 * 15 14 5 18 18 C 1.53004 * 109.47000 * 290.41516 * 17 15 14 19 19 N 1.46499 * 109.47198 * 179.97438 * 18 17 15 20 20 C 1.34777 * 119.99665 * 180.27868 * 19 18 17 21 21 O 1.21283 * 119.99990 * 359.71991 * 20 19 18 22 22 C 1.50698 * 119.99538 * 179.72653 * 20 19 18 23 23 C 1.53001 * 109.47207 * 299.99218 * 22 20 19 24 24 C 1.52995 * 109.47490 * 59.99635 * 22 20 19 25 25 C 1.52999 * 109.47004 * 179.97438 * 22 20 19 26 26 C 1.52994 * 117.50234 * 248.74668 * 25 22 20 27 27 C 1.53005 * 117.50059 * 180.08336 * 25 22 20 28 28 H 1.09005 * 109.47058 * 296.86266 * 1 2 3 29 29 H 1.09001 * 109.47061 * 56.85768 * 1 2 3 30 30 H 1.09003 * 109.47207 * 176.86235 * 1 2 3 31 31 H 1.09006 * 109.88164 * 338.86160 * 4 2 1 32 32 H 1.08998 * 109.88331 * 100.03015 * 4 2 1 33 33 H 0.97001 * 120.00026 * 180.02562 * 9 8 6 34 34 H 1.09000 * 110.34586 * 265.24593 * 14 5 4 35 35 H 1.09004 * 110.40296 * 142.91889 * 14 5 4 36 36 H 1.08995 * 109.47672 * 170.41847 * 17 15 14 37 37 H 1.09006 * 109.46819 * 50.41277 * 17 15 14 38 38 H 1.09009 * 109.46730 * 59.99606 * 18 17 15 39 39 H 1.08998 * 109.46846 * 300.00150 * 18 17 15 40 40 H 0.97001 * 119.99790 * 359.97438 * 19 18 17 41 41 H 1.09001 * 109.47038 * 60.00421 * 23 22 20 42 42 H 1.08995 * 109.47475 * 180.02562 * 23 22 20 43 43 H 1.09001 * 109.47406 * 300.00436 * 23 22 20 44 44 H 1.08995 * 109.47139 * 60.00165 * 24 22 20 45 45 H 1.09003 * 109.47199 * 179.97438 * 24 22 20 46 46 H 1.09001 * 109.46983 * 299.99719 * 24 22 20 47 47 H 1.09008 * 115.54874 * 34.41606 * 25 22 20 48 48 H 1.09003 * 117.49858 * 359.97438 * 26 25 22 49 49 H 1.09001 * 117.50349 * 145.02029 * 26 25 22 50 50 H 1.09000 * 117.49785 * 214.98100 * 27 25 22 51 51 H 1.08995 * 117.49629 * 359.97438 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0199 0.0000 4 6 2.0760 -0.7933 -1.2058 5 7 3.2445 -1.5521 -0.7362 6 6 4.0042 -2.3996 -1.4975 7 1 4.8467 -2.9124 -1.0572 8 6 3.6916 -2.5998 -2.8351 9 7 2.6647 -1.9754 -3.3715 10 14 4.7276 -3.7566 -3.8733 11 1 4.1672 -5.1294 -3.7937 12 1 4.7161 -3.2983 -5.2859 13 1 6.1233 -3.7615 -3.3659 14 6 3.4631 -1.2495 0.6904 15 6 2.0789 -0.7934 1.2153 16 1 1.4447 -1.6508 1.4408 17 6 2.2276 0.1122 2.4395 18 6 2.7269 -0.7134 3.6269 19 7 2.8699 0.1538 4.7990 20 6 3.3048 -0.3586 5.9672 21 8 3.5729 -1.5386 6.0496 22 6 3.4578 0.5347 7.1712 23 6 4.4625 1.6452 6.8580 24 6 2.1039 1.1556 7.5210 25 6 3.9618 -0.2899 8.3573 26 6 2.9961 -0.5151 9.5224 27 6 4.1808 0.4408 9.6837 28 1 -0.3633 0.4644 0.9168 29 1 -0.3633 0.5619 -0.8605 30 1 -0.3634 -1.0261 -0.0563 31 1 1.3129 -1.4786 -1.5749 32 1 2.3742 -0.1059 -1.9974 33 1 2.4460 -2.1155 -4.3061 34 1 4.1935 -0.4479 0.8002 35 1 3.7951 -2.1416 1.2216 36 1 1.2617 0.5536 2.6845 37 1 2.9440 0.9041 2.2206 38 1 3.6930 -1.1549 3.3819 39 1 2.0106 -1.5053 3.8456 40 1 2.6559 1.0975 4.7330 41 1 4.1031 2.2327 6.0131 42 1 4.5736 2.2911 7.7289 43 1 5.4271 1.2029 6.6088 44 1 1.3882 0.3645 7.7442 45 1 2.2145 1.8014 8.3921 46 1 1.7445 1.7431 6.6761 47 1 4.6486 -1.0992 8.1092 48 1 2.0018 -0.0755 9.4442 49 1 3.0478 -1.4724 10.0412 50 1 5.0113 0.1120 10.3083 51 1 3.9661 1.5091 9.7111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103350480.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:23 Heat of formation + Delta-G solvation = -30.372753 kcal Electronic energy + Delta-G solvation = -25985.172129 eV Core-core repulsion = 22498.257193 eV Total energy + Delta-G solvation = -3486.914936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.40345 -39.81597 -38.62709 -36.44370 -35.08897 -34.08647 -32.52772 -32.09107 -28.46632 -28.34434 -27.42637 -25.85656 -25.18913 -23.59337 -23.07061 -22.26761 -21.45514 -20.74575 -19.63239 -18.86214 -18.07437 -17.30634 -16.97538 -16.53023 -16.11793 -15.99519 -15.62946 -15.50128 -15.17139 -14.77465 -14.44889 -14.18620 -13.97818 -13.66667 -13.55385 -13.42254 -13.33360 -13.15251 -12.99894 -12.92878 -12.78610 -12.72287 -12.44241 -12.37787 -12.20280 -11.96959 -11.91427 -11.80686 -11.71042 -11.42222 -11.25635 -11.24700 -11.13950 -10.90456 -10.71534 -10.55840 -10.06144 -8.89125 -7.85989 -5.21178 1.42635 1.44911 1.53552 1.67383 2.17665 2.47942 2.95777 3.31204 3.59505 3.64261 3.69066 3.77728 3.95572 3.98602 4.04272 4.10772 4.16455 4.27886 4.34855 4.36002 4.51473 4.53101 4.62243 4.73901 4.74359 4.75559 4.80752 4.83342 4.90334 4.93414 4.98375 5.01364 5.04886 5.07595 5.13173 5.18853 5.25659 5.28944 5.30462 5.34257 5.40118 5.40691 5.45990 5.49482 5.54682 5.75581 5.83766 6.20556 6.60592 7.10620 7.30274 7.78519 8.42910 9.23976 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.023472 B = 0.002522 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.643307 B =11098.034537 C =11853.006365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.082 0.918 4 C 0.189 3.811 5 N -0.632 5.632 6 C -0.244 4.244 7 H 0.077 0.923 8 C -0.068 4.068 9 N -0.950 5.950 10 Si 0.978 3.022 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.270 1.270 14 C 0.133 3.867 15 C -0.080 4.080 16 H 0.069 0.931 17 C -0.098 4.098 18 C 0.123 3.877 19 N -0.712 5.712 20 C 0.515 3.485 21 O -0.590 6.590 22 C -0.043 4.043 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.155 4.155 26 C -0.186 4.186 27 C -0.156 4.156 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.039 0.961 31 H 0.010 0.990 32 H 0.000 1.000 33 H 0.247 0.753 34 H 0.024 0.976 35 H 0.029 0.971 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.416 0.584 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.045 0.955 44 H 0.055 0.945 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.112 0.888 49 H 0.085 0.915 50 H 0.097 0.903 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.245 13.410 25.444 28.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.100 0.900 4 C 0.064 3.936 5 N -0.358 5.358 6 C -0.373 4.373 7 H 0.095 0.905 8 C -0.261 4.261 9 N -0.599 5.599 10 Si 0.806 3.194 11 H -0.213 1.213 12 H -0.218 1.218 13 H -0.195 1.195 14 C 0.008 3.992 15 C -0.100 4.100 16 H 0.088 0.912 17 C -0.136 4.136 18 C -0.001 4.001 19 N -0.365 5.365 20 C 0.302 3.698 21 O -0.470 6.470 22 C -0.046 4.046 23 C -0.194 4.194 24 C -0.199 4.199 25 C -0.173 4.173 26 C -0.223 4.223 27 C -0.193 4.193 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.028 0.972 32 H 0.018 0.982 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.047 0.953 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.253 0.747 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.108 0.892 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.130 0.870 49 H 0.103 0.897 50 H 0.115 0.885 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.038 12.504 25.277 28.363 hybrid contribution 0.694 -1.037 -1.381 1.862 sum -2.343 11.466 23.896 26.608 Atomic orbital electron populations 1.21637 0.93156 1.01200 1.02414 1.22365 0.96812 0.98644 0.94177 0.90011 1.21018 0.87828 0.91917 0.92798 1.44853 1.32738 1.51249 1.06984 1.19450 1.07855 1.17932 0.92097 0.90523 1.25656 0.99945 1.02300 0.98154 1.70198 1.30303 1.46989 1.12419 0.85089 0.78429 0.78201 0.77700 1.21296 1.21762 1.19529 1.21833 0.96179 0.96994 0.84177 1.22200 0.95649 0.98036 0.94075 0.91245 1.21587 1.03298 0.97488 0.91203 1.21245 1.00431 0.93494 0.84894 1.45895 1.67345 1.13616 1.09616 1.21186 0.75225 0.88286 0.85085 1.90681 1.51745 1.19285 1.85248 1.20253 0.99184 0.94738 0.90460 1.21871 0.97297 0.96498 1.03755 1.22026 0.93112 1.00908 1.03899 1.21990 1.04136 1.01979 0.89228 1.23228 0.96312 1.01433 1.01321 1.23072 0.99914 0.99012 0.97321 0.89771 0.92891 0.94226 0.97189 0.98209 0.94422 0.95812 0.95271 0.88288 0.90074 0.93627 0.92687 0.74664 0.90403 0.89220 0.93549 0.92587 0.89214 0.90225 0.90114 0.86987 0.89657 0.88503 0.86596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 9.16 71.98 0.66 -2.97 16 2 C -0.10 -3.51 3.02 -9.60 -0.03 -3.54 16 3 H 0.08 2.59 8.04 -2.39 -0.02 2.57 16 4 C 0.19 9.54 4.97 86.73 0.43 9.97 16 5 N -0.63 -33.91 3.40 -691.88 -2.35 -36.26 16 6 C -0.24 -14.38 10.28 84.04 0.86 -13.51 16 7 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 8 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 9 N -0.95 -58.89 10.31 21.65 0.22 -58.66 16 10 Si 0.98 47.48 29.55 68.60 2.03 49.51 16 11 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 12 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 13 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 14 C 0.13 5.58 6.04 86.84 0.52 6.11 16 15 C -0.08 -2.56 2.48 -9.40 -0.02 -2.58 16 16 H 0.07 2.35 8.05 -2.39 -0.02 2.33 16 17 C -0.10 -2.11 4.84 30.59 0.15 -1.96 16 18 C 0.12 3.00 5.55 86.38 0.48 3.48 16 19 N -0.71 -13.59 5.34 -463.05 -2.47 -16.06 16 20 C 0.51 12.16 6.48 87.66 0.57 12.73 16 21 O -0.59 -20.26 15.65 -3.04 -0.05 -20.31 16 22 C -0.04 -0.66 0.72 -52.93 -0.04 -0.70 16 23 C -0.14 -1.54 8.21 71.98 0.59 -0.95 16 24 C -0.14 -1.38 6.97 71.98 0.50 -0.88 16 25 C -0.15 -2.78 4.75 -10.79 -0.05 -2.83 16 26 C -0.19 -2.72 9.57 30.62 0.29 -2.43 16 27 C -0.16 -1.82 9.39 30.62 0.29 -1.54 16 28 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.04 1.24 8.06 -2.39 -0.02 1.22 16 31 H 0.01 0.56 7.00 -2.38 -0.02 0.55 16 32 H 0.00 -0.02 7.51 -2.39 -0.02 -0.04 16 33 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 34 H 0.02 0.98 7.96 -2.39 -0.02 0.96 16 35 H 0.03 1.25 8.10 -2.39 -0.02 1.23 16 36 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.63 8.04 -2.38 -0.02 1.61 16 38 H 0.05 1.36 7.60 -2.38 -0.02 1.34 16 39 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 40 H 0.42 4.83 7.31 -92.71 -0.68 4.16 16 41 H 0.08 0.62 7.56 -2.39 -0.02 0.60 16 42 H 0.09 0.65 7.29 -2.39 -0.02 0.63 16 43 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.06 0.68 6.97 -2.39 -0.02 0.66 16 45 H 0.09 0.53 7.07 -2.39 -0.02 0.51 16 46 H 0.08 0.51 7.56 -2.39 -0.02 0.49 16 47 H 0.08 2.00 7.47 -2.38 -0.02 1.98 16 48 H 0.11 1.33 5.85 -2.39 -0.01 1.32 16 49 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 50 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.12 0.85 7.07 -2.39 -0.02 0.84 16 Total: -1.00 -77.67 391.12 3.26 -74.41 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.21 Total: 12.52 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 5.67 Total: -5.14 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -4.60 Total: -110.99 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.05 Total: -20.31 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -77.67 3.26 -74.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103350480.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.032 kcal (2) G-P(sol) polarization free energy of solvation -77.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds