Wall clock time and date at job start Fri Apr 10 2020 22:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08987 * 110.91855 * 2 1 4 4 C 1.54911 * 111.00114 * 236.09422 * 2 1 3 5 5 N 1.47419 * 104.83302 * 204.91488 * 4 2 1 6 6 C 1.34776 * 125.65581 * 204.16692 * 5 4 2 7 7 O 1.21607 * 120.00518 * 179.97438 * 6 5 4 8 8 C 1.47106 * 119.99658 * 359.96015 * 6 5 4 9 9 C 1.32986 * 120.00321 * 174.39736 * 8 6 5 10 10 C 1.50701 * 119.99757 * 358.98052 * 9 8 6 11 11 C 1.53008 * 109.47154 * 65.82321 * 10 9 8 12 12 C 1.53003 * 109.47288 * 185.81962 * 10 9 8 13 13 C 1.53002 * 109.47440 * 305.82099 * 10 9 8 14 14 C 1.47028 * 108.70170 * 24.13773 * 5 4 2 15 15 C 1.54319 * 107.26991 * 358.93531 * 14 5 4 16 16 H 1.09003 * 110.72163 * 96.34891 * 15 14 5 17 17 C 1.53001 * 110.72276 * 219.44639 * 15 14 5 18 18 C 1.52993 * 109.47016 * 293.54716 * 17 15 14 19 19 N 1.46495 * 109.47449 * 179.97438 * 18 17 15 20 20 C 1.36939 * 120.00599 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99342 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00289 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99699 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99754 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46997 * 180.02562 * 24 22 20 26 26 H 1.48496 * 109.47129 * 60.00282 * 24 22 20 27 27 H 1.48497 * 109.47140 * 299.99929 * 24 22 20 28 28 H 1.08993 * 109.46880 * 296.09972 * 1 2 3 29 29 H 1.09004 * 109.46646 * 56.09635 * 1 2 3 30 30 H 1.09000 * 109.47339 * 176.09469 * 1 2 3 31 31 H 1.09007 * 110.36065 * 86.08413 * 4 2 1 32 32 H 1.09000 * 110.37094 * 323.76535 * 4 2 1 33 33 H 1.08004 * 119.99447 * 354.40259 * 8 6 5 34 34 H 1.07993 * 120.00623 * 178.98563 * 9 8 6 35 35 H 1.08997 * 109.47081 * 89.68372 * 11 10 9 36 36 H 1.08993 * 109.47042 * 209.69052 * 11 10 9 37 37 H 1.09006 * 109.46528 * 329.68448 * 11 10 9 38 38 H 1.08999 * 109.46924 * 60.00145 * 12 10 9 39 39 H 1.09001 * 109.46908 * 180.02562 * 12 10 9 40 40 H 1.08998 * 109.46976 * 300.00280 * 12 10 9 41 41 H 1.09002 * 109.46537 * 23.06098 * 13 10 9 42 42 H 1.08998 * 109.46877 * 143.05648 * 13 10 9 43 43 H 1.08993 * 109.47285 * 263.05742 * 13 10 9 44 44 H 1.08996 * 109.87886 * 239.51952 * 14 5 4 45 45 H 1.08997 * 109.88431 * 118.35051 * 14 5 4 46 46 H 1.08995 * 109.47231 * 173.54481 * 17 15 14 47 47 H 1.08997 * 109.46832 * 53.54621 * 17 15 14 48 48 H 1.09002 * 109.47436 * 59.99437 * 18 17 15 49 49 H 1.09010 * 109.47350 * 299.99891 * 18 17 15 50 50 H 0.97007 * 120.00155 * 0.02562 * 19 18 17 51 51 H 0.96992 * 120.00087 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0180 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4481 -1.5604 -1.5940 7 8 5.5163 -1.9090 -1.1289 8 6 4.2701 -1.4854 -3.0523 9 6 5.3066 -1.6897 -3.8601 10 6 6.6683 -1.9754 -3.2810 11 6 6.6409 -3.3210 -2.5532 12 6 7.7015 -2.0263 -4.4084 13 6 7.0450 -0.8691 -2.2936 14 6 3.4674 -1.2743 0.6960 15 6 2.0861 -0.8081 1.2022 16 1 1.4478 -1.6633 1.4239 17 6 2.2349 0.0874 2.4338 18 6 2.7848 -0.7364 3.5999 19 7 2.9278 0.1211 4.7790 20 6 3.4053 -0.4009 5.9515 21 1 3.6768 -1.4448 6.0068 22 6 3.5413 0.4118 7.0686 23 7 3.2109 1.6840 7.0010 24 14 4.1933 -0.3003 8.6677 25 1 4.2418 0.7655 9.7007 26 1 5.5591 -0.8404 8.4486 27 1 3.2968 -1.3920 9.1254 28 1 -0.3633 0.4521 0.9228 29 1 -0.3633 0.5733 -0.8530 30 1 -0.3634 -1.0253 -0.0700 31 1 2.1560 -0.1720 -2.0837 32 1 1.4517 -1.6704 -1.4025 33 1 3.2977 -1.2643 -3.4669 34 1 5.1726 -1.6508 -4.9310 35 1 6.8990 -4.1171 -3.2516 36 1 7.3619 -3.3067 -1.7359 37 1 5.6422 -3.4977 -2.1537 38 1 7.7210 -1.0678 -4.9269 39 1 8.6863 -2.2334 -3.9895 40 1 7.4331 -2.8145 -5.1118 41 1 6.1397 -0.3831 -1.9299 42 1 7.5880 -1.3016 -1.4532 43 1 7.6757 -0.1345 -2.7943 44 1 4.2425 -0.6000 1.0599 45 1 3.6648 -2.2896 1.0400 46 1 1.2619 0.4968 2.7051 47 1 2.9223 0.9029 2.2091 48 1 3.7578 -1.1458 3.3286 49 1 2.0973 -1.5520 3.8246 50 1 2.6836 1.0586 4.7295 51 1 2.8727 2.0538 6.1705 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104001537.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:45 Heat of formation + Delta-G solvation = 7.041277 kcal Electronic energy + Delta-G solvation = -26237.219354 eV Core-core repulsion = 22751.926813 eV Total energy + Delta-G solvation = -3485.292542 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.81502 -39.06671 -36.54358 -35.30142 -33.47987 -32.16783 -31.84562 -30.00299 -27.42832 -27.24970 -27.13114 -26.49969 -24.40017 -23.00117 -22.38282 -20.91915 -20.23661 -19.86814 -18.13072 -17.33063 -17.10037 -16.42846 -15.60715 -15.22380 -14.74889 -14.59042 -14.47491 -14.15944 -13.81785 -13.68282 -13.62366 -13.52314 -13.31267 -13.20910 -12.80458 -12.44935 -12.35313 -12.21631 -11.94888 -11.78682 -11.52574 -11.27783 -11.07705 -10.96544 -10.90842 -10.78222 -10.74031 -10.66351 -10.49782 -10.45205 -10.27912 -9.93869 -9.58259 -9.44455 -9.12605 -8.84298 -8.50152 -6.96815 -6.07455 -3.06518 1.20467 2.94717 3.19439 3.54204 3.58221 3.75399 4.25835 4.32935 4.46826 4.55566 4.63144 4.73853 4.85218 4.95481 5.10055 5.16745 5.20664 5.21915 5.25984 5.30031 5.43790 5.51063 5.52247 5.61224 5.63655 5.68495 5.72006 5.74891 5.80819 5.81228 5.85683 5.95364 5.97063 5.99035 6.07038 6.09314 6.12894 6.13902 6.23353 6.26379 6.34345 6.35791 6.43764 6.55264 6.78329 6.82760 7.49396 7.84454 8.15798 8.79283 9.27122 10.13390 10.28314 11.41480 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.002881 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.066675 B = 9715.870624 C =11130.162638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.086 0.914 4 C 0.104 3.896 5 N -0.616 5.616 6 C 0.541 3.459 7 O -0.512 6.512 8 C -0.220 4.220 9 C -0.050 4.050 10 C -0.042 4.042 11 C -0.113 4.113 12 C -0.142 4.142 13 C -0.114 4.114 14 C 0.114 3.886 15 C -0.089 4.089 16 H 0.085 0.915 17 C -0.115 4.115 18 C 0.157 3.843 19 N -0.746 5.746 20 C -0.330 4.330 21 H 0.064 0.936 22 C -0.047 4.047 23 N -0.946 5.946 24 Si 1.080 2.920 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.295 1.295 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.032 0.968 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.028 0.972 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.020 0.980 49 H 0.018 0.982 50 H 0.366 0.634 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.198 -6.206 -26.817 27.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.104 0.896 4 C -0.019 4.019 5 N -0.350 5.350 6 C 0.333 3.667 7 O -0.391 6.391 8 C -0.240 4.240 9 C -0.070 4.070 10 C -0.042 4.042 11 C -0.170 4.170 12 C -0.199 4.199 13 C -0.171 4.171 14 C -0.008 4.008 15 C -0.108 4.108 16 H 0.104 0.896 17 C -0.154 4.154 18 C 0.030 3.970 19 N -0.391 5.391 20 C -0.461 4.461 21 H 0.082 0.918 22 C -0.244 4.244 23 N -0.591 5.591 24 Si 0.911 3.089 25 H -0.210 1.210 26 H -0.222 1.222 27 H -0.223 1.223 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.047 0.953 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.038 0.962 49 H 0.036 0.964 50 H 0.199 0.801 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.102 -6.312 -25.001 25.785 hybrid contribution -0.673 -0.095 -1.724 1.853 sum -0.774 -6.407 -26.725 27.493 Atomic orbital electron populations 1.21696 0.93639 1.02097 1.02357 1.22431 0.96276 0.99532 0.93872 0.89567 1.22420 0.83504 0.98138 0.97831 1.48428 1.12209 1.67143 1.07198 1.18143 0.82633 0.78777 0.87147 1.90968 1.24148 1.45845 1.78105 1.22545 1.00232 1.08615 0.92653 1.23893 0.94181 0.89895 0.99021 1.19724 0.91460 0.97751 0.95237 1.21942 1.03348 0.93138 0.98592 1.22018 0.99061 1.01279 0.97569 1.22109 1.01141 0.96187 0.97621 1.22056 0.98078 1.01919 0.78788 1.22267 0.95248 0.98718 0.94615 0.89627 1.21738 1.01686 0.98145 0.93793 1.20614 0.97069 0.93098 0.86248 1.42378 1.79651 1.08803 1.08274 1.20046 1.39822 0.96033 0.90225 0.91809 1.25789 1.01344 0.95548 1.01745 1.70880 1.47020 1.12615 1.28626 0.83240 0.75632 0.74565 0.75466 1.21013 1.22236 1.22273 0.91666 0.92493 0.92375 0.90821 0.91361 0.85770 0.85865 0.94911 0.92205 0.91653 0.92807 0.92314 0.92844 0.91953 0.91826 0.95333 0.90896 0.91385 0.91475 0.91844 0.96199 0.96401 0.80094 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.31 37.16 0.35 -0.79 16 2 C -0.10 -0.98 3.09 -88.47 -0.27 -1.26 16 3 H 0.09 0.88 8.05 -51.94 -0.42 0.47 16 4 C 0.10 0.93 5.96 -2.53 -0.02 0.91 16 5 N -0.62 -7.33 3.33 -171.91 -0.57 -7.90 16 6 C 0.54 6.77 5.86 -12.66 -0.07 6.69 16 7 O -0.51 -7.61 8.66 5.27 0.05 -7.56 16 8 C -0.22 -2.08 8.88 -37.81 -0.34 -2.41 16 9 C -0.05 -0.44 8.55 -36.13 -0.31 -0.75 16 10 C -0.04 -0.42 0.75 -155.65 -0.12 -0.54 16 11 C -0.11 -1.29 7.56 37.16 0.28 -1.01 16 12 C -0.14 -1.14 8.03 37.16 0.30 -0.85 16 13 C -0.11 -1.38 7.54 37.16 0.28 -1.10 16 14 C 0.11 1.54 5.61 -3.06 -0.02 1.53 16 15 C -0.09 -1.09 2.45 -88.78 -0.22 -1.31 16 16 H 0.09 1.02 8.04 -51.93 -0.42 0.60 16 17 C -0.12 -1.80 4.72 -26.73 -0.13 -1.93 16 18 C 0.16 3.23 6.11 -4.05 -0.02 3.21 16 19 N -0.75 -19.46 5.60 -59.91 -0.34 -19.79 16 20 C -0.33 -9.67 9.99 -15.06 -0.15 -9.82 16 21 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.05 -1.41 5.50 -17.43 -0.10 -1.50 16 23 N -0.95 -29.92 13.70 55.49 0.76 -29.16 16 24 Si 1.08 26.58 29.92 -169.99 -5.09 21.50 16 25 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 27 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 31 H 0.07 0.54 7.23 -51.93 -0.38 0.16 16 32 H 0.07 0.54 7.98 -51.93 -0.41 0.12 16 33 H 0.12 0.88 6.96 -52.48 -0.37 0.51 16 34 H 0.12 0.75 7.99 -52.49 -0.42 0.33 16 35 H 0.03 0.32 7.82 -51.93 -0.41 -0.09 16 36 H 0.06 0.75 7.22 -51.93 -0.37 0.38 16 37 H 0.06 0.84 5.44 -51.93 -0.28 0.56 16 38 H 0.05 0.39 8.12 -51.93 -0.42 -0.03 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.37 8.11 -51.93 -0.42 -0.05 16 41 H 0.06 0.84 4.82 -51.93 -0.25 0.59 16 42 H 0.06 0.87 6.79 -51.93 -0.35 0.52 16 43 H 0.03 0.31 7.73 -51.93 -0.40 -0.09 16 44 H 0.07 1.14 7.76 -51.93 -0.40 0.74 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.06 1.03 8.06 -51.93 -0.42 0.61 16 48 H 0.02 0.43 7.49 -51.93 -0.39 0.04 16 49 H 0.02 0.38 8.14 -51.92 -0.42 -0.05 16 50 H 0.37 9.67 6.50 -40.82 -0.27 9.41 16 51 H 0.25 7.90 6.77 -40.82 -0.28 7.62 16 LS Contribution 386.07 15.07 5.82 5.82 Total: -1.00 -33.45 386.07 -9.16 -42.60 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -9.24 Total: 5.42 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -0.55 Total: -10.92 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.15 Total: -56.85 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.05 Total: -7.56 kcal Atomic # 14 Polarization: 26.58 SS G_CDS: -5.09 Total: 21.50 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.45 -9.16 -42.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104001537.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.645 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds