Wall clock time and date at job start Fri Apr 10 2020 22:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08987 * 110.91855 * 2 1 4 4 C 1.54911 * 111.00114 * 236.09422 * 2 1 3 5 5 N 1.47419 * 104.83302 * 204.91488 * 4 2 1 6 6 C 1.34776 * 125.65581 * 204.16692 * 5 4 2 7 7 O 1.21607 * 120.00518 * 179.97438 * 6 5 4 8 8 C 1.47106 * 119.99658 * 359.96015 * 6 5 4 9 9 C 1.32986 * 120.00321 * 174.39736 * 8 6 5 10 10 C 1.50701 * 119.99757 * 358.98052 * 9 8 6 11 11 C 1.53008 * 109.47154 * 65.82321 * 10 9 8 12 12 C 1.53003 * 109.47288 * 185.81962 * 10 9 8 13 13 C 1.53002 * 109.47440 * 305.82099 * 10 9 8 14 14 C 1.47028 * 108.70170 * 24.13773 * 5 4 2 15 15 C 1.54319 * 107.26991 * 358.93531 * 14 5 4 16 16 H 1.09003 * 110.72163 * 96.34891 * 15 14 5 17 17 C 1.53001 * 110.72276 * 219.44639 * 15 14 5 18 18 C 1.52993 * 109.47016 * 293.54716 * 17 15 14 19 19 N 1.46495 * 109.47449 * 179.97438 * 18 17 15 20 20 C 1.36939 * 120.00599 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99342 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00289 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99699 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99754 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46997 * 180.02562 * 24 22 20 26 26 H 1.48496 * 109.47129 * 60.00282 * 24 22 20 27 27 H 1.48497 * 109.47140 * 299.99929 * 24 22 20 28 28 H 1.08993 * 109.46880 * 296.09972 * 1 2 3 29 29 H 1.09004 * 109.46646 * 56.09635 * 1 2 3 30 30 H 1.09000 * 109.47339 * 176.09469 * 1 2 3 31 31 H 1.09007 * 110.36065 * 86.08413 * 4 2 1 32 32 H 1.09000 * 110.37094 * 323.76535 * 4 2 1 33 33 H 1.08004 * 119.99447 * 354.40259 * 8 6 5 34 34 H 1.07993 * 120.00623 * 178.98563 * 9 8 6 35 35 H 1.08997 * 109.47081 * 89.68372 * 11 10 9 36 36 H 1.08993 * 109.47042 * 209.69052 * 11 10 9 37 37 H 1.09006 * 109.46528 * 329.68448 * 11 10 9 38 38 H 1.08999 * 109.46924 * 60.00145 * 12 10 9 39 39 H 1.09001 * 109.46908 * 180.02562 * 12 10 9 40 40 H 1.08998 * 109.46976 * 300.00280 * 12 10 9 41 41 H 1.09002 * 109.46537 * 23.06098 * 13 10 9 42 42 H 1.08998 * 109.46877 * 143.05648 * 13 10 9 43 43 H 1.08993 * 109.47285 * 263.05742 * 13 10 9 44 44 H 1.08996 * 109.87886 * 239.51952 * 14 5 4 45 45 H 1.08997 * 109.88431 * 118.35051 * 14 5 4 46 46 H 1.08995 * 109.47231 * 173.54481 * 17 15 14 47 47 H 1.08997 * 109.46832 * 53.54621 * 17 15 14 48 48 H 1.09002 * 109.47436 * 59.99437 * 18 17 15 49 49 H 1.09010 * 109.47350 * 299.99891 * 18 17 15 50 50 H 0.97007 * 120.00155 * 0.02562 * 19 18 17 51 51 H 0.96992 * 120.00087 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0180 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4481 -1.5604 -1.5940 7 8 5.5163 -1.9090 -1.1289 8 6 4.2701 -1.4854 -3.0523 9 6 5.3066 -1.6897 -3.8601 10 6 6.6683 -1.9754 -3.2810 11 6 6.6409 -3.3210 -2.5532 12 6 7.7015 -2.0263 -4.4084 13 6 7.0450 -0.8691 -2.2936 14 6 3.4674 -1.2743 0.6960 15 6 2.0861 -0.8081 1.2022 16 1 1.4478 -1.6633 1.4239 17 6 2.2349 0.0874 2.4338 18 6 2.7848 -0.7364 3.5999 19 7 2.9278 0.1211 4.7790 20 6 3.4053 -0.4009 5.9515 21 1 3.6768 -1.4448 6.0068 22 6 3.5413 0.4118 7.0686 23 7 3.2109 1.6840 7.0010 24 14 4.1933 -0.3003 8.6677 25 1 4.2418 0.7655 9.7007 26 1 5.5591 -0.8404 8.4486 27 1 3.2968 -1.3920 9.1254 28 1 -0.3633 0.4521 0.9228 29 1 -0.3633 0.5733 -0.8530 30 1 -0.3634 -1.0253 -0.0700 31 1 2.1560 -0.1720 -2.0837 32 1 1.4517 -1.6704 -1.4025 33 1 3.2977 -1.2643 -3.4669 34 1 5.1726 -1.6508 -4.9310 35 1 6.8990 -4.1171 -3.2516 36 1 7.3619 -3.3067 -1.7359 37 1 5.6422 -3.4977 -2.1537 38 1 7.7210 -1.0678 -4.9269 39 1 8.6863 -2.2334 -3.9895 40 1 7.4331 -2.8145 -5.1118 41 1 6.1397 -0.3831 -1.9299 42 1 7.5880 -1.3016 -1.4532 43 1 7.6757 -0.1345 -2.7943 44 1 4.2425 -0.6000 1.0599 45 1 3.6648 -2.2896 1.0400 46 1 1.2619 0.4968 2.7051 47 1 2.9223 0.9029 2.2091 48 1 3.7578 -1.1458 3.3286 49 1 2.0973 -1.5520 3.8246 50 1 2.6836 1.0586 4.7295 51 1 2.8727 2.0538 6.1705 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104001537.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:45 Heat of formation + Delta-G solvation = -12.668187 kcal Electronic energy + Delta-G solvation = -26238.074021 eV Core-core repulsion = 22751.926813 eV Total energy + Delta-G solvation = -3486.147208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.72895 -40.01601 -37.57290 -37.00535 -34.82572 -33.52644 -32.63064 -31.59620 -28.60528 -28.20459 -28.12417 -27.24601 -26.00432 -24.57452 -23.55451 -22.10343 -21.13598 -20.87782 -19.43938 -18.95235 -18.03759 -17.41650 -16.74727 -16.54293 -16.18871 -15.89624 -15.59149 -15.39912 -15.04465 -14.97221 -14.62491 -14.57811 -14.46822 -14.17034 -13.82025 -13.46964 -13.23007 -13.04158 -12.89334 -12.83340 -12.73912 -12.69472 -12.48765 -12.32172 -11.93030 -11.89936 -11.84806 -11.77817 -11.72093 -11.69905 -11.49919 -11.47524 -11.12974 -10.96396 -10.39480 -10.33700 -9.46236 -9.16917 -8.45902 -5.39538 0.45516 1.55331 1.65780 1.82565 2.04933 2.32799 2.67746 3.34194 3.35950 3.49230 3.56182 3.69951 3.82650 3.95856 4.03761 4.18233 4.19094 4.24381 4.33995 4.40429 4.44175 4.52150 4.58525 4.59455 4.64348 4.67842 4.76343 4.79411 4.83392 4.88211 4.90874 4.91682 4.96172 5.11257 5.17472 5.17863 5.18696 5.22676 5.23763 5.30557 5.33903 5.35007 5.46886 5.49397 5.51156 5.52744 5.72782 6.44788 6.60863 7.04785 7.23668 7.95004 8.05454 9.06518 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.002881 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.066675 B = 9715.870624 C =11130.162638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.080 0.920 4 C 0.105 3.895 5 N -0.619 5.619 6 C 0.528 3.472 7 O -0.548 6.548 8 C -0.224 4.224 9 C -0.042 4.042 10 C -0.046 4.046 11 C -0.107 4.107 12 C -0.137 4.137 13 C -0.108 4.108 14 C 0.117 3.883 15 C -0.080 4.080 16 H 0.095 0.905 17 C -0.099 4.099 18 C 0.156 3.844 19 N -0.760 5.760 20 C -0.341 4.341 21 H 0.063 0.937 22 C -0.104 4.104 23 N -0.973 5.973 24 Si 1.129 2.871 25 H -0.289 1.289 26 H -0.280 1.280 27 H -0.275 1.275 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.049 0.951 36 H 0.034 0.966 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.034 0.966 43 H 0.038 0.962 44 H 0.041 0.959 45 H 0.051 0.949 46 H 0.073 0.927 47 H 0.053 0.947 48 H 0.009 0.991 49 H 0.020 0.980 50 H 0.361 0.639 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.475 -6.843 -29.643 30.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 H 0.098 0.902 4 C -0.017 4.017 5 N -0.353 5.353 6 C 0.322 3.678 7 O -0.429 6.429 8 C -0.244 4.244 9 C -0.061 4.061 10 C -0.046 4.046 11 C -0.164 4.164 12 C -0.194 4.194 13 C -0.165 4.165 14 C -0.006 4.006 15 C -0.099 4.099 16 H 0.113 0.887 17 C -0.138 4.138 18 C 0.030 3.970 19 N -0.405 5.405 20 C -0.472 4.472 21 H 0.081 0.919 22 C -0.295 4.295 23 N -0.621 5.621 24 Si 0.953 3.047 25 H -0.215 1.215 26 H -0.206 1.206 27 H -0.201 1.201 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.174 0.826 34 H 0.179 0.821 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.072 0.928 48 H 0.027 0.973 49 H 0.038 0.962 50 H 0.193 0.807 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.409 -6.970 -27.882 28.775 hybrid contribution -0.224 0.072 -0.854 0.886 sum -1.633 -6.897 -28.737 29.598 Atomic orbital electron populations 1.21679 0.91886 1.03036 1.02758 1.22400 0.97559 0.98804 0.92535 0.90156 1.22635 0.81811 0.99122 0.98095 1.48538 1.13577 1.67044 1.06109 1.18885 0.82157 0.78072 0.88715 1.90966 1.25608 1.47410 1.78947 1.22672 1.02071 1.09383 0.90324 1.24155 0.92693 0.88519 1.00763 1.19740 0.93593 0.95927 0.95367 1.21846 1.01512 0.94773 0.98288 1.21979 0.97889 1.02635 0.96943 1.22015 1.00105 0.96954 0.97398 1.21828 0.97999 1.00114 0.80651 1.22162 0.94762 0.98813 0.94197 0.88691 1.21565 1.01196 0.97689 0.93311 1.20773 0.96737 0.93240 0.86274 1.42617 1.79527 1.09196 1.09113 1.20408 1.39136 0.96138 0.91504 0.91886 1.27306 1.01546 0.95307 1.05329 1.70988 1.48946 1.13795 1.28353 0.82628 0.76128 0.74364 0.71606 1.21451 1.20571 1.20078 0.92760 0.90391 0.91421 0.88217 0.89445 0.82572 0.82055 0.93253 0.94697 0.93403 0.91565 0.93024 0.91084 0.93636 0.94684 0.94361 0.94037 0.93088 0.90841 0.92798 0.97280 0.96219 0.80671 0.94526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.31 71.98 0.67 -1.13 16 2 C -0.09 -1.62 3.09 -9.40 -0.03 -1.65 16 3 H 0.08 1.52 8.05 -2.39 -0.02 1.50 16 4 C 0.11 1.57 5.96 86.86 0.52 2.08 16 5 N -0.62 -14.40 3.33 -816.06 -2.71 -17.11 16 6 C 0.53 13.09 5.86 86.57 0.51 13.59 16 7 O -0.55 -17.21 8.66 -4.05 -0.04 -17.24 16 8 C -0.22 -3.65 8.88 23.43 0.21 -3.44 16 9 C -0.04 -0.61 8.55 24.52 0.21 -0.40 16 10 C -0.05 -0.89 0.75 -52.92 -0.04 -0.93 16 11 C -0.11 -2.47 7.56 71.98 0.54 -1.92 16 12 C -0.14 -1.90 8.03 71.98 0.58 -1.32 16 13 C -0.11 -2.68 7.54 71.98 0.54 -2.14 16 14 C 0.12 3.32 5.61 86.73 0.49 3.81 16 15 C -0.08 -1.93 2.45 -9.60 -0.02 -1.95 16 16 H 0.09 2.16 8.04 -2.39 -0.02 2.14 16 17 C -0.10 -3.16 4.72 30.59 0.14 -3.01 16 18 C 0.16 6.61 6.11 86.38 0.53 7.14 16 19 N -0.76 -40.80 5.60 -343.46 -1.92 -42.73 16 20 C -0.34 -20.31 9.99 84.03 0.84 -19.47 16 21 H 0.06 3.69 7.83 -2.91 -0.02 3.67 16 22 C -0.10 -6.27 5.50 84.86 0.47 -5.81 16 23 N -0.97 -62.72 13.70 21.65 0.30 -62.43 16 24 Si 1.13 53.69 29.92 68.60 2.05 55.74 16 25 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.79 8.07 -2.39 -0.02 0.77 16 31 H 0.10 1.03 7.23 -2.38 -0.02 1.01 16 32 H 0.09 1.03 7.98 -2.39 -0.02 1.01 16 33 H 0.16 1.50 6.96 -2.91 -0.02 1.48 16 34 H 0.16 1.15 7.99 -2.91 -0.02 1.13 16 35 H 0.05 0.93 7.82 -2.39 -0.02 0.91 16 36 H 0.03 0.94 7.22 -2.39 -0.02 0.93 16 37 H 0.05 1.26 5.44 -2.38 -0.01 1.24 16 38 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 39 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.07 0.75 8.11 -2.39 -0.02 0.73 16 41 H 0.04 1.27 4.82 -2.39 -0.01 1.26 16 42 H 0.03 1.04 6.79 -2.39 -0.02 1.02 16 43 H 0.04 0.83 7.73 -2.39 -0.02 0.81 16 44 H 0.04 1.41 7.76 -2.39 -0.02 1.39 16 45 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 46 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.05 1.81 8.06 -2.39 -0.02 1.79 16 48 H 0.01 0.41 7.49 -2.39 -0.02 0.39 16 49 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 50 H 0.36 19.78 6.50 -92.70 -0.60 19.17 16 51 H 0.24 15.65 6.77 -92.71 -0.63 15.02 16 Total: -1.00 -75.79 386.07 4.25 -71.54 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.42 Total: 28.78 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 6.15 Total: -16.55 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -4.34 Total: -122.27 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.04 Total: -17.24 kcal Atomic # 14 Polarization: 53.69 SS G_CDS: 2.05 Total: 55.74 kcal Total: -75.79 4.25 -71.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104001537.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.875 kcal (2) G-P(sol) polarization free energy of solvation -75.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds