Wall clock time and date at job start Fri Apr 10 2020 22:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.65871 * 2 1 4 4 C 1.54598 * 110.99090 * 236.84669 * 2 1 3 5 5 N 1.48118 * 103.42392 * 204.37479 * 4 2 1 6 6 C 1.34770 * 127.02960 * 219.28617 * 5 4 2 7 7 O 1.21613 * 119.99795 * 179.68224 * 6 5 4 8 8 C 1.47102 * 120.00275 * 359.67466 * 6 5 4 9 9 C 1.32996 * 119.99998 * 179.72519 * 8 6 5 10 10 C 1.50708 * 119.99908 * 180.27909 * 9 8 6 11 11 C 1.52993 * 109.46882 * 0.02562 * 10 9 8 12 12 C 1.52995 * 109.46998 * 120.00206 * 10 9 8 13 13 C 1.53000 * 109.47106 * 240.00215 * 10 9 8 14 14 C 1.47482 * 105.93243 * 39.01903 * 5 4 2 15 15 C 1.54000 * 107.08784 * 334.78113 * 14 5 4 16 16 H 1.08997 * 110.33058 * 120.19693 * 15 14 5 17 17 C 1.53003 * 110.32930 * 242.31463 * 15 14 5 18 18 C 1.52994 * 109.46664 * 293.54424 * 17 15 14 19 19 N 1.46507 * 109.47115 * 179.97438 * 18 17 15 20 20 C 1.36937 * 120.00113 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00145 * 0.02562 * 20 19 18 22 22 C 1.38810 * 119.99753 * 179.97438 * 20 19 18 23 23 N 1.31620 * 120.00163 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99860 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47125 * 60.00237 * 24 22 20 26 26 H 1.48497 * 109.47262 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46919 * 300.00392 * 24 22 20 28 28 H 1.08999 * 109.47121 * 296.80841 * 1 2 3 29 29 H 1.09000 * 109.47027 * 56.80914 * 1 2 3 30 30 H 1.08998 * 109.46968 * 176.80979 * 1 2 3 31 31 H 1.08999 * 110.62229 * 85.85537 * 4 2 1 32 32 H 1.09004 * 110.54393 * 322.85036 * 4 2 1 33 33 H 1.08002 * 120.00178 * 0.02562 * 8 6 5 34 34 H 1.08001 * 120.00297 * 0.27935 * 9 8 6 35 35 H 1.09002 * 109.47147 * 60.00298 * 11 10 9 36 36 H 1.08998 * 109.46952 * 179.97438 * 11 10 9 37 37 H 1.09000 * 109.47551 * 299.99754 * 11 10 9 38 38 H 1.09005 * 109.47090 * 59.99890 * 12 10 9 39 39 H 1.08993 * 109.47498 * 179.97438 * 12 10 9 40 40 H 1.09000 * 109.47570 * 300.00421 * 12 10 9 41 41 H 1.09003 * 109.46949 * 59.99607 * 13 10 9 42 42 H 1.08998 * 109.47223 * 179.97438 * 13 10 9 43 43 H 1.09005 * 109.47048 * 300.00151 * 13 10 9 44 44 H 1.09001 * 109.91090 * 94.14225 * 14 5 4 45 45 H 1.08998 * 109.91064 * 215.42156 * 14 5 4 46 46 H 1.08998 * 109.46706 * 53.54228 * 17 15 14 47 47 H 1.08997 * 109.47400 * 173.54241 * 17 15 14 48 48 H 1.09004 * 109.47417 * 299.99820 * 18 17 15 49 49 H 1.09005 * 109.47643 * 60.00032 * 18 17 15 50 50 H 0.97000 * 119.99882 * 0.02562 * 19 18 17 51 51 H 0.96998 * 119.99931 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0200 0.0000 4 6 2.0838 -0.7894 -1.2084 5 7 3.4322 -1.2056 -0.7585 6 6 4.5593 -1.2404 -1.4965 7 8 5.6055 -1.6009 -0.9921 8 6 4.5240 -0.8426 -2.9123 9 6 5.6374 -0.8717 -3.6391 10 6 5.6025 -0.4581 -5.0879 11 6 4.1772 -0.0525 -5.4682 12 6 6.5443 0.7285 -5.3023 13 6 6.0508 -1.6298 -5.9637 14 6 3.2903 -1.5680 0.6641 15 6 2.0776 -0.7916 1.2101 16 1 1.3222 -1.4829 1.5834 17 6 2.5154 0.1660 2.3202 18 6 3.0034 -0.6399 3.5256 19 7 3.4232 0.2769 4.5884 20 6 3.9000 -0.2195 5.7722 21 1 3.9669 -1.2870 5.9223 22 6 4.2983 0.6492 6.7790 23 7 4.2172 1.9501 6.5959 24 14 4.9493 -0.0280 8.3936 25 1 6.1562 -0.8532 8.1336 26 1 5.3034 1.0973 9.2955 27 1 3.9052 -0.8666 9.0355 28 1 -0.3633 0.4635 0.9172 29 1 -0.3633 0.5626 -0.8600 30 1 -0.3633 -1.0261 -0.0572 31 1 2.1525 -0.1480 -2.0870 32 1 1.4612 -1.6601 -1.4143 33 1 3.5950 -0.5222 -3.3602 34 1 6.5666 -1.1917 -3.1912 35 1 3.8583 0.7824 -4.8442 36 1 4.1520 0.2471 -6.5159 37 1 3.5059 -0.8975 -5.3154 38 1 7.5599 0.4399 -5.0312 39 1 6.5195 1.0274 -6.3502 40 1 6.2250 1.5632 -4.6783 41 1 5.3798 -2.4751 -5.8109 42 1 6.0251 -1.3308 -7.0116 43 1 7.0663 -1.9184 -5.6926 44 1 3.1179 -2.6401 0.7586 45 1 4.1895 -1.2843 1.2109 46 1 3.3238 0.7996 1.9554 47 1 1.6714 0.7886 2.6169 48 1 2.1950 -1.2737 3.8904 49 1 3.8475 -1.2625 3.2290 50 1 3.3628 1.2356 4.4538 51 1 4.4952 2.5571 7.2995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104001538.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:48 Heat of formation + Delta-G solvation = -30.266571 kcal Electronic energy + Delta-G solvation = -25542.027056 eV Core-core repulsion = 22055.116725 eV Total energy + Delta-G solvation = -3486.910332 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.24693 -38.58550 -37.59547 -35.07415 -33.19755 -32.08675 -31.74897 -30.09504 -27.76296 -27.62212 -27.25679 -26.49546 -24.67569 -23.14859 -22.37741 -20.66725 -19.97085 -19.39085 -18.34368 -17.40899 -16.99330 -16.29452 -15.59085 -15.23411 -14.70471 -14.62001 -14.52323 -14.36571 -14.19987 -13.66109 -13.42306 -13.22557 -12.98456 -12.82667 -12.72924 -12.56827 -12.48433 -12.40382 -12.07674 -11.94592 -11.83123 -11.43847 -11.40963 -11.32805 -11.14018 -11.05757 -10.96117 -10.78864 -10.51124 -10.37685 -10.29148 -9.93643 -9.85699 -9.64272 -9.60895 -8.80801 -8.66242 -6.86037 -5.70957 -2.99315 1.24026 2.94538 3.27420 3.48477 3.52194 3.53692 4.15990 4.38818 4.41553 4.51896 4.56827 4.60625 4.71932 4.83281 4.95292 5.05213 5.16494 5.21672 5.23896 5.26112 5.28202 5.37072 5.37363 5.47508 5.48325 5.54401 5.57164 5.61599 5.63491 5.74455 5.75866 5.81149 5.83509 5.90421 5.92129 5.97520 6.03830 6.08719 6.17962 6.23763 6.25639 6.39212 6.42526 6.50726 6.90473 6.95414 7.54255 7.74877 8.19030 8.48323 9.58983 10.17848 10.52318 11.52140 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.017024 B = 0.002531 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.329011 B =11060.415292 C =12000.015144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 H 0.085 0.915 4 C 0.104 3.896 5 N -0.616 5.616 6 C 0.561 3.439 7 O -0.545 6.545 8 C -0.215 4.215 9 C -0.056 4.056 10 C -0.048 4.048 11 C -0.148 4.148 12 C -0.139 4.139 13 C -0.138 4.138 14 C 0.107 3.893 15 C -0.091 4.091 16 H 0.086 0.914 17 C -0.116 4.116 18 C 0.151 3.849 19 N -0.734 5.734 20 C -0.238 4.238 21 H 0.069 0.931 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.066 0.934 48 H 0.018 0.982 49 H 0.019 0.981 50 H 0.383 0.617 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.372 -4.426 -28.830 29.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.103 0.897 4 C -0.019 4.019 5 N -0.350 5.350 6 C 0.352 3.648 7 O -0.423 6.423 8 C -0.236 4.236 9 C -0.076 4.076 10 C -0.048 4.048 11 C -0.205 4.205 12 C -0.196 4.196 13 C -0.196 4.196 14 C -0.016 4.016 15 C -0.111 4.111 16 H 0.105 0.895 17 C -0.154 4.154 18 C 0.024 3.976 19 N -0.378 5.378 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.212 4.212 23 N -0.584 5.584 24 Si 0.739 3.261 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.105 0.895 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.035 0.965 49 H 0.037 0.963 50 H 0.216 0.784 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.669 -4.744 -28.471 29.239 hybrid contribution 0.252 0.005 0.996 1.028 sum -4.417 -4.738 -27.475 28.228 Atomic orbital electron populations 1.21729 0.93765 1.02001 1.02286 1.22310 0.96103 0.99862 0.94045 0.89704 1.22586 0.83091 0.98543 0.97687 1.48673 1.08211 1.66049 1.12017 1.18252 0.82039 0.77890 0.86629 1.90812 1.29782 1.48420 1.73335 1.22738 1.00357 1.07099 0.93400 1.23724 0.98450 0.91263 0.94126 1.19782 0.96747 0.96346 0.91959 1.22004 0.95224 1.01608 1.01639 1.21835 0.99037 0.96890 1.01886 1.21830 1.01676 0.97076 0.98974 1.22236 0.99929 0.98786 0.80610 1.22152 0.96472 0.97450 0.95011 0.89549 1.21786 1.01071 0.97800 0.94784 1.20706 0.96199 0.92907 0.87838 1.42359 1.77266 1.05046 1.13116 1.19203 1.34317 0.91957 0.91445 0.91256 1.24746 1.02416 0.95327 0.98671 1.69653 1.54144 1.00829 1.33794 0.86254 0.78821 0.77465 0.83591 1.21254 1.21693 1.21286 0.91722 0.92580 0.92415 0.90386 0.90879 0.85207 0.85573 0.92069 0.92150 0.92138 0.92130 0.92032 0.92214 0.92347 0.92039 0.92147 0.91702 0.89527 0.91884 0.91535 0.96462 0.96301 0.78356 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.17 37.16 0.34 -0.78 16 2 C -0.10 -1.03 3.18 -88.93 -0.28 -1.32 16 3 H 0.08 0.92 7.87 -51.93 -0.41 0.51 16 4 C 0.10 0.95 6.34 -2.31 -0.01 0.94 16 5 N -0.62 -7.99 3.29 -171.37 -0.56 -8.55 16 6 C 0.56 8.14 7.84 -12.67 -0.10 8.04 16 7 O -0.54 -10.23 16.56 5.27 0.09 -10.14 16 8 C -0.22 -2.26 8.49 -37.80 -0.32 -2.58 16 9 C -0.06 -0.54 8.33 -36.12 -0.30 -0.84 16 10 C -0.05 -0.33 0.99 -155.66 -0.15 -0.49 16 11 C -0.15 -0.86 7.13 37.15 0.26 -0.59 16 12 C -0.14 -0.90 8.45 37.15 0.31 -0.59 16 13 C -0.14 -0.84 8.46 37.16 0.31 -0.52 16 14 C 0.11 1.51 6.15 -2.98 -0.02 1.49 16 15 C -0.09 -1.15 2.61 -89.24 -0.23 -1.38 16 16 H 0.09 1.01 7.85 -51.93 -0.41 0.60 16 17 C -0.12 -1.90 4.53 -26.73 -0.12 -2.02 16 18 C 0.15 3.14 6.08 -4.04 -0.02 3.12 16 19 N -0.73 -19.49 5.60 -59.90 -0.34 -19.82 16 20 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 21 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 23 N -0.94 -29.19 13.06 55.49 0.72 -28.46 16 24 Si 0.91 23.14 29.55 -169.99 -5.02 18.11 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 31 H 0.08 0.57 6.65 -51.93 -0.35 0.22 16 32 H 0.07 0.57 8.02 -51.93 -0.42 0.16 16 33 H 0.13 1.03 4.37 -52.49 -0.23 0.80 16 34 H 0.13 1.42 7.49 -52.49 -0.39 1.02 16 35 H 0.06 0.36 7.50 -51.93 -0.39 -0.03 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 0.34 7.50 -51.93 -0.39 -0.05 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.09 1.50 6.64 -51.93 -0.34 1.15 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.02 0.41 6.88 -51.93 -0.36 0.05 16 50 H 0.38 10.63 7.67 -40.82 -0.31 10.31 16 51 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 401.17 15.07 6.05 6.05 Total: -1.00 -34.49 401.17 -9.11 -43.60 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -9.46 Total: 4.43 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -0.58 Total: -5.21 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.18 Total: -56.83 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.49 -9.11 -43.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104001538.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.335 kcal (2) G-P(sol) polarization free energy of solvation -34.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds