Wall clock time and date at job start Fri Apr 10 2020 22:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50709 * 120.00008 * 2 1 4 4 C 1.52998 * 109.46819 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.46699 * 239.99608 * 3 2 1 6 6 C 1.53002 * 109.47312 * 119.99967 * 3 2 1 7 7 C 1.50698 * 109.46987 * 179.97438 * 6 3 2 8 8 O 1.21278 * 120.00183 * 359.97438 * 7 6 3 9 9 N 1.34771 * 119.99912 * 179.97438 * 7 6 3 10 10 C 1.47431 * 125.64533 * 359.95850 * 9 7 6 11 11 C 1.54912 * 104.82949 * 204.16043 * 10 9 7 12 12 H 1.09000 * 111.00254 * 81.07017 * 11 10 9 13 13 C 1.53004 * 111.00695 * 204.91801 * 11 10 9 14 14 C 1.55156 * 101.58604 * 322.99608 * 11 10 9 15 15 H 1.09000 * 110.86864 * 277.06858 * 14 11 10 16 16 C 1.52992 * 110.72497 * 153.86469 * 14 11 10 17 17 C 1.52997 * 109.47482 * 180.02562 * 16 14 11 18 18 N 1.46505 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.36936 * 119.99992 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99834 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00093 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00176 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00265 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46951 * 89.99797 * 23 21 19 25 25 H 1.48500 * 109.47313 * 210.00112 * 23 21 19 26 26 H 1.48501 * 109.46991 * 330.00153 * 23 21 19 27 27 C 1.47023 * 125.64877 * 180.02562 * 9 7 6 28 28 H 1.08002 * 120.00074 * 0.02562 * 1 2 3 29 29 H 1.07996 * 119.99580 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.00482 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46894 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47177 * 299.99791 * 4 3 2 33 33 H 1.08993 * 109.47206 * 59.99982 * 4 3 2 34 34 H 1.08997 * 109.47659 * 299.99762 * 5 3 2 35 35 H 1.09001 * 109.46861 * 60.00413 * 5 3 2 36 36 H 1.09003 * 109.46855 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.47043 * 59.99679 * 6 3 2 38 38 H 1.09001 * 109.46609 * 299.99852 * 6 3 2 39 39 H 1.08992 * 110.37314 * 323.00177 * 10 9 7 40 40 H 1.09008 * 110.36286 * 85.21720 * 10 9 7 41 41 H 1.08997 * 109.47132 * 172.19914 * 13 11 10 42 42 H 1.09005 * 109.47105 * 292.20409 * 13 11 10 43 43 H 1.09001 * 109.46710 * 52.19730 * 13 11 10 44 44 H 1.09002 * 109.47103 * 60.02094 * 16 14 11 45 45 H 1.08998 * 109.46862 * 300.02906 * 16 14 11 46 46 H 1.09002 * 109.47153 * 59.99783 * 17 16 14 47 47 H 1.09001 * 109.46832 * 299.99974 * 17 16 14 48 48 H 0.96996 * 119.99606 * 0.02562 * 18 17 16 49 49 H 0.97001 * 120.00803 * 179.97438 * 22 21 19 50 50 H 1.08996 * 109.87920 * 59.49572 * 27 9 7 51 51 H 1.08996 * 109.88311 * 298.32106 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2492 6 6 2.9432 1.3863 1.2492 7 6 3.6971 2.6911 1.2489 8 8 3.5461 3.4784 0.3388 9 7 4.5391 2.9831 2.2598 10 6 4.8153 2.1217 3.4240 11 6 5.2969 3.0930 4.5306 12 1 4.4519 3.5757 5.0215 13 6 6.1798 2.3694 5.5493 14 6 6.1219 4.1178 3.7082 15 1 7.1320 3.7492 3.5295 16 6 6.1600 5.4741 4.4151 17 6 6.9787 6.4614 3.5809 18 7 7.0146 7.7602 4.2576 19 6 7.6946 8.8070 3.6946 20 1 8.2041 8.6752 2.7514 21 6 7.7291 10.0375 4.3360 22 7 7.1086 10.1980 5.4856 23 14 8.6561 11.4657 3.5676 24 1 7.7410 12.2314 2.6835 25 1 9.1695 12.3565 4.6392 26 1 9.7947 10.9446 2.7693 27 6 5.3333 4.2140 2.3851 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.6142 3.4120 -0.0011 32 1 0.4429 2.4101 -0.8909 33 1 0.4423 2.4105 0.8890 34 1 3.6515 0.5577 -1.2492 35 1 2.3165 1.3284 -2.1392 36 1 3.4879 2.3303 -1.2495 37 1 3.6515 0.5578 1.2493 38 1 2.3164 1.3286 2.1392 39 1 3.9075 1.6075 3.7393 40 1 5.5960 1.3995 3.1847 41 1 6.6157 3.0969 6.2339 42 1 5.5764 1.6570 6.1120 43 1 6.9762 1.8386 5.0276 44 1 6.6196 5.3593 5.3968 45 1 5.1442 5.8517 4.5316 46 1 6.5190 6.5761 2.5992 47 1 7.9945 6.0836 3.4645 48 1 6.5573 7.8784 5.1048 49 1 7.1330 11.0578 5.9341 50 1 4.6726 5.0806 2.4095 51 1 6.0249 4.2959 1.5467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104238981.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:56 Heat of formation + Delta-G solvation = -20.115249 kcal Electronic energy + Delta-G solvation = -25913.030293 eV Core-core repulsion = 22426.560156 eV Total energy + Delta-G solvation = -3486.470137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.60110 -38.86710 -36.94482 -35.13589 -33.33266 -32.07747 -31.55220 -30.27083 -28.70709 -27.40942 -26.68766 -26.44526 -24.16706 -22.75156 -22.27376 -20.72834 -20.07880 -19.33912 -18.34957 -17.25791 -17.01449 -16.41946 -15.64213 -15.56388 -14.99255 -14.69936 -14.40164 -14.26274 -13.84262 -13.78968 -13.65851 -13.26572 -13.08029 -13.00538 -12.75025 -12.63703 -12.22879 -12.11418 -11.91219 -11.84549 -11.48145 -11.35341 -11.29842 -11.18875 -11.07366 -11.02288 -10.83749 -10.82379 -10.60072 -10.43469 -10.27025 -9.95115 -9.66697 -9.64491 -9.53182 -8.84153 -8.67222 -6.89128 -5.73859 -3.02341 1.99684 2.55427 2.90103 3.46069 3.50963 3.52592 4.22407 4.33510 4.50342 4.52937 4.60565 4.67827 4.70231 4.90438 5.00365 5.09749 5.11775 5.21933 5.25046 5.31233 5.33285 5.40548 5.49483 5.54027 5.54995 5.61086 5.65008 5.72492 5.79461 5.83357 5.84146 5.88620 5.94556 6.00738 6.01177 6.10137 6.17563 6.25266 6.30265 6.32242 6.38888 6.40691 6.44557 6.54685 6.86194 6.90627 7.45904 7.72957 8.12951 8.45386 9.56286 10.14691 10.49121 11.49203 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.018426 B = 0.002572 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.255704 B =10883.656151 C =11882.177233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 C -0.020 4.020 4 C -0.156 4.156 5 C -0.150 4.150 6 C -0.123 4.123 7 C 0.526 3.474 8 O -0.530 6.530 9 N -0.619 5.619 10 C 0.102 3.898 11 C -0.102 4.102 12 H 0.087 0.913 13 C -0.140 4.140 14 C -0.089 4.089 15 H 0.085 0.915 16 C -0.115 4.115 17 C 0.151 3.849 18 N -0.734 5.734 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.111 3.889 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.019 0.981 47 H 0.017 0.983 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.074 0.926 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.965 -25.639 -5.317 28.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.163 4.163 3 C -0.021 4.021 4 C -0.213 4.213 5 C -0.207 4.207 6 C -0.163 4.163 7 C 0.316 3.684 8 O -0.407 6.407 9 N -0.353 5.353 10 C -0.021 4.021 11 C -0.121 4.121 12 H 0.105 0.895 13 C -0.198 4.198 14 C -0.109 4.109 15 H 0.104 0.896 16 C -0.153 4.153 17 C 0.024 3.976 18 N -0.378 5.378 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.011 4.011 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.037 0.963 47 H 0.035 0.965 48 H 0.217 0.783 49 H 0.064 0.936 50 H 0.093 0.907 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.991 -25.132 -6.000 27.702 hybrid contribution 0.345 0.706 -0.002 0.786 sum -9.645 -24.426 -6.001 26.938 Atomic orbital electron populations 1.24026 0.96188 1.02090 1.01026 1.22942 0.95931 0.97540 0.99867 1.19388 0.94955 0.93293 0.94450 1.22187 0.98543 0.99726 1.00875 1.22058 0.99208 1.03594 0.95796 1.21682 0.99041 0.95550 1.00009 1.20294 0.78799 0.88588 0.80733 1.90602 1.64294 1.50847 1.34975 1.48608 1.43606 1.20582 1.22518 1.22445 1.00612 0.93522 0.85484 1.22431 0.99010 0.95642 0.95010 0.89473 1.21698 0.99199 1.00325 0.98581 1.22282 0.98834 0.96236 0.93509 0.89621 1.21726 1.01346 0.92814 0.99396 1.20682 0.96134 0.86260 0.94549 1.42366 1.63471 1.06478 1.25506 1.19241 1.24656 0.89643 1.03347 0.91207 1.24744 1.01241 0.97881 0.97292 1.69659 1.47851 1.24085 1.16782 0.86183 0.79383 0.82622 0.77989 1.21704 1.21778 1.20765 1.22110 0.94183 0.86915 0.97902 0.87760 0.88762 0.87572 0.89408 0.92769 0.93239 0.93468 0.92969 0.89372 0.89067 0.89042 0.90819 0.91238 0.91552 0.92529 0.92404 0.91337 0.91725 0.96306 0.96477 0.78344 0.93553 0.90744 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.44 13.70 29.02 0.40 -1.04 16 2 C -0.14 -1.12 8.76 -36.02 -0.32 -1.44 16 3 C -0.02 -0.19 0.74 -155.66 -0.11 -0.30 16 4 C -0.16 -1.61 6.83 37.16 0.25 -1.36 16 5 C -0.15 -1.51 8.16 37.16 0.30 -1.20 16 6 C -0.12 -1.07 3.76 -27.88 -0.10 -1.18 16 7 C 0.53 6.39 7.26 -10.99 -0.08 6.31 16 8 O -0.53 -8.17 11.67 5.56 0.06 -8.10 16 9 N -0.62 -7.10 3.33 -170.52 -0.57 -7.67 16 10 C 0.10 0.86 6.16 -2.52 -0.02 0.84 16 11 C -0.10 -0.95 3.09 -88.47 -0.27 -1.22 16 12 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 13 C -0.14 -1.10 9.31 37.16 0.35 -0.75 16 14 C -0.09 -1.06 2.45 -88.79 -0.22 -1.28 16 15 H 0.09 0.99 8.04 -51.93 -0.42 0.57 16 16 C -0.11 -1.76 4.71 -26.74 -0.13 -1.89 16 17 C 0.15 3.04 6.11 -4.04 -0.02 3.02 16 18 N -0.73 -18.99 5.60 -59.91 -0.34 -19.33 16 19 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 20 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 23 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 C 0.11 1.47 5.61 -3.06 -0.02 1.46 16 28 H 0.10 0.78 5.69 -52.49 -0.30 0.48 16 29 H 0.09 0.57 8.06 -52.49 -0.42 0.14 16 30 H 0.11 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.09 1.14 5.52 -51.93 -0.29 0.85 16 32 H 0.05 0.52 7.50 -51.93 -0.39 0.13 16 33 H 0.05 0.46 7.49 -51.93 -0.39 0.08 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 1.11 5.51 -51.93 -0.29 0.82 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.69 7.84 -51.93 -0.41 0.29 16 39 H 0.07 0.49 7.47 -51.93 -0.39 0.10 16 40 H 0.07 0.51 7.99 -51.92 -0.41 0.09 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.03 8.06 -51.93 -0.42 0.62 16 46 H 0.02 0.39 7.49 -51.93 -0.39 0.00 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.38 10.33 7.67 -40.82 -0.31 10.02 16 49 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 50 H 0.07 1.14 7.76 -51.93 -0.40 0.74 16 51 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 394.21 15.07 5.94 5.94 Total: -1.00 -32.48 394.21 -8.84 -41.32 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -9.41 Total: 5.58 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.23 Total: -7.57 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.18 Total: -54.99 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.06 Total: -8.10 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.48 -8.84 -41.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104238981.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.209 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds