Wall clock time and date at job start Fri Apr 10 2020 22:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50709 * 120.00008 * 2 1 4 4 C 1.52998 * 109.46819 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.46699 * 239.99608 * 3 2 1 6 6 C 1.53002 * 109.47312 * 119.99967 * 3 2 1 7 7 C 1.50698 * 109.46987 * 179.97438 * 6 3 2 8 8 O 1.21278 * 120.00183 * 359.97438 * 7 6 3 9 9 N 1.34771 * 119.99912 * 179.97438 * 7 6 3 10 10 C 1.47431 * 125.64533 * 359.95850 * 9 7 6 11 11 C 1.54912 * 104.82949 * 204.16043 * 10 9 7 12 12 H 1.09000 * 111.00254 * 81.07017 * 11 10 9 13 13 C 1.53004 * 111.00695 * 204.91801 * 11 10 9 14 14 C 1.55156 * 101.58604 * 322.99608 * 11 10 9 15 15 H 1.09000 * 110.86864 * 277.06858 * 14 11 10 16 16 C 1.52992 * 110.72497 * 153.86469 * 14 11 10 17 17 C 1.52997 * 109.47482 * 180.02562 * 16 14 11 18 18 N 1.46505 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.36936 * 119.99992 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99834 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00093 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00176 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00265 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46951 * 89.99797 * 23 21 19 25 25 H 1.48500 * 109.47313 * 210.00112 * 23 21 19 26 26 H 1.48501 * 109.46991 * 330.00153 * 23 21 19 27 27 C 1.47023 * 125.64877 * 180.02562 * 9 7 6 28 28 H 1.08002 * 120.00074 * 0.02562 * 1 2 3 29 29 H 1.07996 * 119.99580 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.00482 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46894 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47177 * 299.99791 * 4 3 2 33 33 H 1.08993 * 109.47206 * 59.99982 * 4 3 2 34 34 H 1.08997 * 109.47659 * 299.99762 * 5 3 2 35 35 H 1.09001 * 109.46861 * 60.00413 * 5 3 2 36 36 H 1.09003 * 109.46855 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.47043 * 59.99679 * 6 3 2 38 38 H 1.09001 * 109.46609 * 299.99852 * 6 3 2 39 39 H 1.08992 * 110.37314 * 323.00177 * 10 9 7 40 40 H 1.09008 * 110.36286 * 85.21720 * 10 9 7 41 41 H 1.08997 * 109.47132 * 172.19914 * 13 11 10 42 42 H 1.09005 * 109.47105 * 292.20409 * 13 11 10 43 43 H 1.09001 * 109.46710 * 52.19730 * 13 11 10 44 44 H 1.09002 * 109.47103 * 60.02094 * 16 14 11 45 45 H 1.08998 * 109.46862 * 300.02906 * 16 14 11 46 46 H 1.09002 * 109.47153 * 59.99783 * 17 16 14 47 47 H 1.09001 * 109.46832 * 299.99974 * 17 16 14 48 48 H 0.96996 * 119.99606 * 0.02562 * 18 17 16 49 49 H 0.97001 * 120.00803 * 179.97438 * 22 21 19 50 50 H 1.08996 * 109.87920 * 59.49572 * 27 9 7 51 51 H 1.08996 * 109.88311 * 298.32106 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2492 6 6 2.9432 1.3863 1.2492 7 6 3.6971 2.6911 1.2489 8 8 3.5461 3.4784 0.3388 9 7 4.5391 2.9831 2.2598 10 6 4.8153 2.1217 3.4240 11 6 5.2969 3.0930 4.5306 12 1 4.4519 3.5757 5.0215 13 6 6.1798 2.3694 5.5493 14 6 6.1219 4.1178 3.7082 15 1 7.1320 3.7492 3.5295 16 6 6.1600 5.4741 4.4151 17 6 6.9787 6.4614 3.5809 18 7 7.0146 7.7602 4.2576 19 6 7.6946 8.8070 3.6946 20 1 8.2041 8.6752 2.7514 21 6 7.7291 10.0375 4.3360 22 7 7.1086 10.1980 5.4856 23 14 8.6561 11.4657 3.5676 24 1 7.7410 12.2314 2.6835 25 1 9.1695 12.3565 4.6392 26 1 9.7947 10.9446 2.7693 27 6 5.3333 4.2140 2.3851 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.6142 3.4120 -0.0011 32 1 0.4429 2.4101 -0.8909 33 1 0.4423 2.4105 0.8890 34 1 3.6515 0.5577 -1.2492 35 1 2.3165 1.3284 -2.1392 36 1 3.4879 2.3303 -1.2495 37 1 3.6515 0.5578 1.2493 38 1 2.3164 1.3286 2.1392 39 1 3.9075 1.6075 3.7393 40 1 5.5960 1.3995 3.1847 41 1 6.6157 3.0969 6.2339 42 1 5.5764 1.6570 6.1120 43 1 6.9762 1.8386 5.0276 44 1 6.6196 5.3593 5.3968 45 1 5.1442 5.8517 4.5316 46 1 6.5190 6.5761 2.5992 47 1 7.9945 6.0836 3.4645 48 1 6.5573 7.8784 5.1048 49 1 7.1330 11.0578 5.9341 50 1 4.6726 5.0806 2.4095 51 1 6.0249 4.2959 1.5467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104238981.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:55 Heat of formation + Delta-G solvation = -38.917558 kcal Electronic energy + Delta-G solvation = -25913.845622 eV Core-core repulsion = 22426.560156 eV Total energy + Delta-G solvation = -3487.285467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.49669 -39.75878 -37.79941 -36.85517 -34.66415 -33.45195 -32.27414 -31.73617 -29.74937 -28.21091 -27.95552 -27.17023 -25.80908 -24.08340 -23.23928 -21.95179 -21.04803 -20.21308 -19.17763 -19.02222 -18.03107 -17.38565 -16.69011 -16.52098 -16.28620 -15.88671 -15.53280 -15.41129 -15.19225 -14.97666 -14.61156 -14.56404 -14.32202 -13.99808 -13.65097 -13.51639 -13.22404 -13.07384 -12.94663 -12.84671 -12.68268 -12.63085 -12.53119 -12.30540 -12.22046 -12.12041 -12.01269 -11.92006 -11.83275 -11.63398 -11.53668 -11.51650 -11.18413 -10.95150 -10.49088 -10.22197 -9.61334 -9.03186 -7.98186 -5.27445 1.43246 1.44769 1.47186 1.55546 1.65577 2.03823 2.53650 3.35018 3.39340 3.54074 3.66294 3.72499 3.83354 3.98331 4.12772 4.14107 4.26548 4.32631 4.38382 4.43947 4.47822 4.51668 4.57163 4.64856 4.66794 4.71762 4.75156 4.78484 4.82497 4.90545 4.94866 4.97734 5.03847 5.05021 5.10526 5.16407 5.19143 5.28501 5.29292 5.34736 5.42230 5.45385 5.46801 5.54059 5.58272 5.79091 5.98095 6.24765 6.58774 7.22541 7.30448 8.06526 8.29956 9.25414 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.018426 B = 0.002572 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.255704 B =10883.656151 C =11882.177233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C -0.021 4.021 4 C -0.153 4.153 5 C -0.147 4.147 6 C -0.114 4.114 7 C 0.517 3.483 8 O -0.572 6.572 9 N -0.621 5.621 10 C 0.103 3.897 11 C -0.095 4.095 12 H 0.081 0.919 13 C -0.136 4.136 14 C -0.080 4.080 15 H 0.096 0.904 16 C -0.100 4.100 17 C 0.150 3.850 18 N -0.748 5.748 19 C -0.249 4.249 20 H 0.073 0.927 21 C -0.077 4.077 22 N -0.969 5.969 23 Si 0.975 3.025 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.269 1.269 27 C 0.113 3.887 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.125 0.875 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.053 0.947 46 H 0.011 0.989 47 H 0.022 0.978 48 H 0.374 0.626 49 H 0.252 0.748 50 H 0.043 0.957 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.940 -28.672 -4.993 30.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.164 4.164 3 C -0.022 4.022 4 C -0.210 4.210 5 C -0.204 4.204 6 C -0.154 4.154 7 C 0.308 3.692 8 O -0.452 6.452 9 N -0.354 5.354 10 C -0.019 4.019 11 C -0.114 4.114 12 H 0.099 0.901 13 C -0.194 4.194 14 C -0.099 4.099 15 H 0.114 0.886 16 C -0.138 4.138 17 C 0.023 3.977 18 N -0.391 5.391 19 C -0.381 4.381 20 H 0.091 0.909 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.803 3.197 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.194 1.194 27 C -0.010 4.010 28 H 0.115 0.885 29 H 0.129 0.871 30 H 0.143 0.857 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.029 0.971 47 H 0.040 0.960 48 H 0.206 0.794 49 H 0.061 0.939 50 H 0.061 0.939 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.957 -28.218 -5.680 30.457 hybrid contribution 0.301 1.649 -0.159 1.683 sum -9.656 -26.569 -5.839 28.866 Atomic orbital electron populations 1.24157 0.96234 1.02604 1.00266 1.22910 0.95966 0.97073 1.00494 1.19379 0.94721 0.93755 0.94311 1.22125 0.98655 0.98941 1.01314 1.21991 0.99421 1.02487 0.96485 1.21717 0.99250 0.93968 1.00418 1.21054 0.78589 0.89451 0.80089 1.90605 1.65542 1.52427 1.36671 1.48719 1.43037 1.20221 1.23429 1.22685 1.02635 0.93007 0.83558 1.22404 0.98528 0.95041 0.95401 0.90087 1.21680 0.99396 1.00283 0.98028 1.22172 0.99772 0.95024 0.92942 0.88556 1.21557 0.99650 0.93477 0.99101 1.20854 0.97061 0.85151 0.94595 1.42606 1.63070 1.08000 1.25420 1.19634 1.24346 0.90683 1.03389 0.90945 1.25603 1.02691 1.00579 0.98016 1.69810 1.49465 1.24518 1.18179 0.85122 0.78323 0.79117 0.77105 1.21484 1.21743 1.19396 1.21904 0.93700 0.87229 0.98195 0.88460 0.87134 0.85708 0.92561 0.92668 0.92454 0.92032 0.93064 0.92360 0.86417 0.87146 0.88072 0.89080 0.92744 0.90485 0.91377 0.90864 0.92809 0.97133 0.96029 0.79405 0.93879 0.93857 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.38 13.70 67.78 0.93 -1.45 16 2 C -0.15 -1.85 8.76 25.65 0.22 -1.62 16 3 C -0.02 -0.36 0.74 -52.92 -0.04 -0.40 16 4 C -0.15 -3.16 6.83 71.98 0.49 -2.66 16 5 C -0.15 -2.88 8.16 71.98 0.59 -2.29 16 6 C -0.11 -1.71 3.76 29.85 0.11 -1.60 16 7 C 0.52 12.30 7.26 87.66 0.64 12.94 16 8 O -0.57 -18.54 11.67 -3.02 -0.04 -18.57 16 9 N -0.62 -13.62 3.33 -811.79 -2.70 -16.32 16 10 C 0.10 1.38 6.16 86.86 0.53 1.91 16 11 C -0.09 -1.54 3.09 -9.40 -0.03 -1.57 16 12 H 0.08 1.45 8.05 -2.39 -0.02 1.43 16 13 C -0.14 -1.69 9.31 71.98 0.67 -1.02 16 14 C -0.08 -1.84 2.45 -9.61 -0.02 -1.86 16 15 H 0.10 2.07 8.04 -2.39 -0.02 2.05 16 16 C -0.10 -3.09 4.71 30.59 0.14 -2.95 16 17 C 0.15 6.16 6.11 86.38 0.53 6.69 16 18 N -0.75 -39.68 5.60 -343.45 -1.92 -41.60 16 19 C -0.25 -14.49 9.99 84.03 0.84 -13.65 16 20 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 21 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 22 N -0.97 -60.62 13.06 21.65 0.28 -60.34 16 23 Si 0.97 47.39 29.55 68.60 2.03 49.42 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 27 C 0.11 3.08 5.61 86.73 0.49 3.56 16 28 H 0.10 1.30 5.69 -2.91 -0.02 1.29 16 29 H 0.11 0.99 8.06 -2.91 -0.02 0.97 16 30 H 0.13 1.14 8.06 -2.91 -0.02 1.12 16 31 H 0.06 1.54 5.52 -2.39 -0.01 1.53 16 32 H 0.05 1.07 7.50 -2.39 -0.02 1.05 16 33 H 0.06 1.04 7.49 -2.39 -0.02 1.03 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 1.53 5.51 -2.39 -0.01 1.51 16 37 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.11 1.27 7.84 -2.39 -0.02 1.25 16 39 H 0.10 0.87 7.47 -2.39 -0.02 0.86 16 40 H 0.09 0.91 7.99 -2.38 -0.02 0.89 16 41 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 44 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.05 1.78 8.06 -2.39 -0.02 1.76 16 46 H 0.01 0.46 7.49 -2.39 -0.02 0.44 16 47 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.37 20.82 7.67 -92.71 -0.71 20.11 16 49 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 50 H 0.04 1.43 7.76 -2.39 -0.02 1.41 16 51 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -72.88 394.21 4.38 -68.50 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.17 Total: 28.96 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 6.56 Total: -10.06 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -4.34 Total: -118.26 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.04 Total: -18.57 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -72.88 4.38 -68.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104238981.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.587 kcal (2) G-P(sol) polarization free energy of solvation -72.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds