Wall clock time and date at job start Fri Apr 10 2020 22:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47505 * 2 1 4 4 C 1.50703 * 109.47088 * 119.99923 * 2 1 3 5 5 O 1.21282 * 119.99956 * 88.05537 * 4 2 1 6 6 N 1.34776 * 120.00134 * 268.05369 * 4 2 1 7 7 C 1.47486 * 127.03665 * 174.79056 * 6 4 2 8 8 C 1.54005 * 107.24747 * 154.61961 * 7 6 4 9 9 H 1.08994 * 110.32561 * 120.10198 * 8 7 6 10 10 C 1.53008 * 110.32381 * 242.21578 * 8 7 6 11 11 C 1.54613 * 105.04424 * 1.20826 * 8 7 6 12 12 H 1.08995 * 110.74389 * 263.33486 * 11 8 7 13 13 C 1.53002 * 110.73777 * 140.18599 * 11 8 7 14 14 C 1.52997 * 109.47114 * 175.00032 * 13 11 8 15 15 N 1.46505 * 109.47192 * 180.02562 * 14 13 11 16 16 C 1.36931 * 120.00161 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99991 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99889 * 180.02562 * 16 15 14 19 19 N 1.31613 * 120.00178 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99848 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47360 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47212 * 119.99790 * 20 18 16 23 23 H 1.48505 * 109.47018 * 239.99478 * 20 18 16 24 24 C 1.48385 * 127.16923 * 354.59509 * 6 4 2 25 25 C 1.53000 * 109.47357 * 239.99753 * 2 1 3 26 26 C 1.53781 * 113.61456 * 159.13661 * 25 2 1 27 27 C 1.53959 * 87.01612 * 220.05290 * 26 25 2 28 28 C 1.53781 * 87.11409 * 25.36409 * 27 26 25 29 29 H 1.09003 * 109.47046 * 301.93007 * 1 2 3 30 30 H 1.08997 * 109.47423 * 61.92564 * 1 2 3 31 31 H 1.08998 * 109.47318 * 181.93361 * 1 2 3 32 32 H 1.08997 * 109.90664 * 35.16234 * 7 6 4 33 33 H 1.08994 * 109.91401 * 274.07869 * 7 6 4 34 34 H 1.09003 * 109.46564 * 58.54801 * 10 8 7 35 35 H 1.08999 * 109.46722 * 178.54712 * 10 8 7 36 36 H 1.08991 * 109.46887 * 298.54789 * 10 8 7 37 37 H 1.09002 * 109.47214 * 295.00162 * 13 11 8 38 38 H 1.09002 * 109.47056 * 55.00085 * 13 11 8 39 39 H 1.08994 * 109.47443 * 300.00192 * 14 13 11 40 40 H 1.08994 * 109.46961 * 60.00399 * 14 13 11 41 41 H 0.96998 * 119.99950 * 359.97438 * 15 14 13 42 42 H 0.97000 * 120.00144 * 179.97438 * 19 18 16 43 43 H 1.09002 * 110.52030 * 100.79329 * 24 6 4 44 44 H 1.08997 * 110.84005 * 337.82049 * 24 6 4 45 45 H 1.08991 * 112.84895 * 290.33885 * 25 2 1 46 46 H 1.09003 * 113.61387 * 334.56816 * 26 25 2 47 47 H 1.08998 * 113.61228 * 105.47581 * 26 25 2 48 48 H 1.08996 * 113.53505 * 270.81008 * 27 26 25 49 49 H 1.09006 * 113.66477 * 139.93787 * 27 26 25 50 50 H 1.09004 * 113.61179 * 220.08965 * 28 27 26 51 51 H 1.08999 * 113.61265 * 89.18853 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.2008 -1.9113 1.2111 6 7 2.2943 -0.0112 2.3525 7 6 2.6859 -0.5544 3.6666 8 6 3.4717 0.5481 4.4006 9 1 2.9731 0.8112 5.3335 10 6 4.9040 0.0859 4.6765 11 6 3.4711 1.7536 3.4326 12 1 4.3929 1.7829 2.8518 13 6 3.2739 3.0634 4.1985 14 6 3.4021 4.2432 3.2329 15 7 3.2139 5.4973 3.9664 16 6 3.2847 6.6944 3.3054 17 1 3.4798 6.7141 2.2433 18 6 3.1069 7.8827 4.0005 19 7 2.8697 7.8588 5.2949 20 14 3.2042 9.5158 3.0989 21 1 3.4799 9.2713 1.6603 22 1 1.9140 10.2371 3.2405 23 1 4.2968 10.3373 3.6792 24 6 2.2526 1.4624 2.5209 25 6 2.0400 -0.7213 -1.2492 26 6 3.4867 -0.3576 -1.6230 27 6 3.0233 -0.3619 -3.0911 28 6 1.6120 -0.0509 -2.5654 29 1 -0.3633 0.5435 0.8722 30 1 -0.3634 0.4836 -0.9067 31 1 -0.3634 -1.0270 0.0347 32 1 3.3168 -1.4330 3.5319 33 1 1.7969 -0.8201 4.2384 34 1 5.3934 -0.1621 3.7346 35 1 5.4544 0.8852 5.1726 36 1 4.8843 -0.7946 5.3186 37 1 2.2835 3.0725 4.6538 38 1 4.0324 3.1468 4.9769 39 1 4.3924 4.2341 2.7776 40 1 2.6436 4.1597 2.4546 41 1 3.0384 5.4797 4.9202 42 1 2.7458 8.6891 5.7807 43 1 1.3261 1.7652 3.0088 44 1 2.3620 1.9657 1.5602 45 1 1.8520 -1.7946 -1.2246 46 1 3.7962 0.6245 -1.2657 47 1 4.2080 -1.1408 -1.3895 48 1 3.1055 -1.3373 -3.5706 49 1 3.4539 0.4420 -3.6882 50 1 0.8221 -0.5868 -3.0917 51 1 1.4081 1.0153 -2.4663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104342334.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:58 Heat of formation + Delta-G solvation = -27.923735 kcal Electronic energy + Delta-G solvation = -26270.911775 eV Core-core repulsion = 22784.103037 eV Total energy + Delta-G solvation = -3486.808739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.58995 -39.12776 -37.73388 -35.10874 -33.55968 -32.73841 -31.99787 -30.16698 -27.12030 -26.93807 -26.21986 -25.44482 -24.32424 -23.06490 -22.26265 -20.69453 -20.00669 -19.62777 -19.08347 -17.25322 -17.07916 -16.22042 -15.82953 -15.36444 -14.97098 -14.64977 -14.51769 -14.38868 -13.80452 -13.50423 -13.31045 -13.29168 -13.10692 -12.97407 -12.74226 -12.69015 -12.48470 -12.20196 -12.12522 -11.84606 -11.73646 -11.45582 -11.29079 -11.18390 -10.99862 -10.86258 -10.74527 -10.58286 -10.52045 -10.45511 -10.33247 -10.28819 -9.97693 -9.72673 -9.65356 -8.89370 -8.74050 -6.93959 -5.78511 -3.07168 2.58285 2.86974 3.41758 3.47393 3.49647 4.17572 4.35573 4.44954 4.45436 4.51531 4.59804 4.64052 4.72329 4.81597 4.97244 5.08393 5.12859 5.17062 5.25054 5.39494 5.41709 5.50030 5.51143 5.52437 5.54308 5.56270 5.59601 5.64111 5.69047 5.71051 5.75251 5.76749 5.81095 5.84474 5.91838 5.95773 6.03476 6.05853 6.09981 6.19027 6.26084 6.33639 6.33916 6.43194 6.80124 6.84940 7.48007 7.68428 8.11475 8.40585 9.51725 10.10099 10.44260 11.44522 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.012083 B = 0.003260 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.795722 B = 8586.739163 C =10131.022787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 H 0.092 0.908 4 C 0.540 3.460 5 O -0.548 6.548 6 N -0.621 5.621 7 C 0.108 3.892 8 C -0.103 4.103 9 H 0.087 0.913 10 C -0.142 4.142 11 C -0.090 4.090 12 H 0.084 0.916 13 C -0.116 4.116 14 C 0.153 3.847 15 N -0.734 5.734 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.102 3.898 25 C -0.094 4.094 26 C -0.139 4.139 27 C -0.142 4.142 28 C -0.134 4.134 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.017 0.983 40 H 0.017 0.983 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.100 0.900 46 H 0.081 0.919 47 H 0.066 0.934 48 H 0.078 0.922 49 H 0.067 0.933 50 H 0.067 0.933 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.661 -19.205 -9.651 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.120 4.120 3 H 0.110 0.890 4 C 0.329 3.671 5 O -0.425 6.425 6 N -0.355 5.355 7 C -0.014 4.014 8 C -0.122 4.122 9 H 0.106 0.894 10 C -0.199 4.199 11 C -0.110 4.110 12 H 0.102 0.898 13 C -0.154 4.154 14 C 0.025 3.975 15 N -0.378 5.378 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.737 3.263 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.020 4.020 25 C -0.112 4.112 26 C -0.177 4.177 27 C -0.179 4.179 28 C -0.172 4.172 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.118 0.882 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.086 0.914 50 H 0.086 0.914 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.580 -19.795 -9.892 22.186 hybrid contribution 0.003 1.091 0.032 1.091 sum -1.576 -18.704 -9.860 21.203 Atomic orbital electron populations 1.21661 0.92400 1.02719 1.02767 1.21326 0.97796 1.00411 0.92461 0.89016 1.20303 0.76675 0.87021 0.83075 1.90662 1.53373 1.14800 1.83680 1.48947 1.68061 1.08333 1.10138 1.22098 0.98784 0.97280 0.83263 1.22162 0.96718 0.94424 0.98884 0.89431 1.21828 0.95283 1.01190 1.01614 1.22332 0.98160 0.94430 0.96081 0.89781 1.21742 1.02316 0.92606 0.98733 1.20666 0.97472 0.85712 0.93639 1.42378 1.86537 1.00327 1.08599 1.19272 1.40766 0.84174 0.92804 0.91171 1.24743 1.02803 0.97751 0.95752 1.69665 1.55876 1.26163 1.06523 0.86131 0.77227 0.84252 0.78675 1.20549 1.21845 1.21855 1.22813 0.99122 0.79281 1.00800 1.22469 0.96224 1.00555 0.91983 1.23009 0.96468 1.01911 0.96290 1.22811 0.96837 1.01805 0.96458 1.22948 0.97074 1.01019 0.96141 0.92129 0.91123 0.92052 0.90680 0.91873 0.92657 0.91900 0.92638 0.91593 0.91346 0.96514 0.96494 0.78315 0.93560 0.90383 0.89850 0.88193 0.90078 0.91521 0.90323 0.91379 0.91426 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.02 37.15 0.34 -0.91 16 2 C -0.10 -1.01 2.16 -91.77 -0.20 -1.21 16 3 H 0.09 0.88 6.19 -51.93 -0.32 0.56 16 4 C 0.54 7.01 6.89 -10.98 -0.08 6.94 16 5 O -0.55 -8.87 16.42 5.56 0.09 -8.78 16 6 N -0.62 -7.43 3.30 -169.54 -0.56 -7.99 16 7 C 0.11 1.21 6.63 -2.98 -0.02 1.19 16 8 C -0.10 -1.06 3.17 -89.24 -0.28 -1.35 16 9 H 0.09 0.87 7.85 -51.93 -0.41 0.46 16 10 C -0.14 -1.37 8.90 37.16 0.33 -1.04 16 11 C -0.09 -1.05 2.59 -88.74 -0.23 -1.28 16 12 H 0.08 1.02 7.86 -51.93 -0.41 0.61 16 13 C -0.12 -1.68 4.70 -26.73 -0.13 -1.80 16 14 C 0.15 2.88 6.15 -4.04 -0.02 2.85 16 15 N -0.73 -18.20 5.60 -59.91 -0.34 -18.54 16 16 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 20 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 C 0.10 1.14 5.77 -1.98 -0.01 1.13 16 25 C -0.09 -0.91 2.83 -89.81 -0.25 -1.17 16 26 C -0.14 -1.33 7.62 -25.83 -0.20 -1.53 16 27 C -0.14 -1.14 8.09 -25.83 -0.21 -1.35 16 28 C -0.13 -1.07 6.71 -25.92 -0.17 -1.25 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.53 7.43 -51.93 -0.39 0.15 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.89 7.55 -51.93 -0.39 0.50 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.96 7.99 -51.93 -0.41 0.55 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.02 0.32 7.66 -51.93 -0.40 -0.08 16 41 H 0.38 9.99 7.67 -40.82 -0.31 9.68 16 42 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.08 0.87 7.94 -51.93 -0.41 0.45 16 44 H 0.08 0.89 6.47 -51.93 -0.34 0.55 16 45 H 0.10 1.12 7.68 -51.93 -0.40 0.72 16 46 H 0.08 0.77 7.99 -51.93 -0.41 0.36 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 398.20 15.07 6.00 6.00 Total: -1.00 -31.85 398.20 -10.13 -41.98 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -9.64 Total: 5.49 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -1.38 Total: -8.04 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.17 Total: -53.79 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.85 -10.13 -41.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104342334.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.053 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds