Wall clock time and date at job start Fri Apr 10 2020 22:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00494 * 2 1 4 4 C 1.50707 * 119.99589 * 180.02562 * 2 1 3 5 5 C 1.53005 * 109.47081 * 95.00062 * 4 2 1 6 6 H 1.09003 * 109.46740 * 304.99808 * 5 4 2 7 7 C 1.52995 * 109.47071 * 64.99895 * 5 4 2 8 8 C 1.50694 * 109.46887 * 185.00015 * 5 4 2 9 9 O 1.21281 * 120.00115 * 359.97438 * 8 5 4 10 10 N 1.34775 * 119.99788 * 179.97438 * 8 5 4 11 11 C 1.46508 * 120.00083 * 179.97438 * 10 8 5 12 12 C 1.52995 * 109.47100 * 176.55067 * 11 10 8 13 13 N 1.46507 * 109.47025 * 54.64213 * 12 11 10 14 14 C 1.36933 * 120.00158 * 62.76893 * 13 12 11 15 15 H 1.08001 * 119.99777 * 354.57439 * 14 13 12 16 16 C 1.38811 * 120.00296 * 174.57769 * 14 13 12 17 17 N 1.31618 * 119.99669 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00215 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47074 * 89.99620 * 18 16 14 20 20 H 1.48494 * 109.46900 * 209.99771 * 18 16 14 21 21 H 1.48499 * 109.46828 * 329.99536 * 18 16 14 22 22 C 1.52998 * 109.47055 * 174.63671 * 12 11 10 23 23 C 1.53005 * 109.47284 * 180.02562 * 22 12 11 24 24 C 1.53002 * 109.46897 * 300.00057 * 23 22 12 25 25 C 1.53003 * 109.47040 * 60.00390 * 24 23 22 26 26 C 1.52999 * 109.47571 * 294.64280 * 12 11 10 27 27 H 1.07997 * 120.00539 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99420 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47468 * 270.00205 * 3 2 1 30 30 H 1.09002 * 109.47024 * 30.00172 * 3 2 1 31 31 H 1.08999 * 109.47260 * 150.00129 * 3 2 1 32 32 H 1.09000 * 109.47311 * 335.00102 * 4 2 1 33 33 H 1.09000 * 109.46791 * 214.99376 * 4 2 1 34 34 H 1.09003 * 109.47410 * 60.00323 * 7 5 4 35 35 H 1.09003 * 109.47123 * 180.02562 * 7 5 4 36 36 H 1.08999 * 109.47273 * 299.99778 * 7 5 4 37 37 H 0.97003 * 120.00266 * 0.02562 * 10 8 5 38 38 H 1.09000 * 109.46747 * 56.55720 * 11 10 8 39 39 H 1.08994 * 109.47496 * 296.55550 * 11 10 8 40 40 H 0.97004 * 119.99699 * 243.04530 * 13 12 11 41 41 H 0.96996 * 119.99852 * 180.02562 * 17 16 14 42 42 H 1.08995 * 109.47368 * 300.00645 * 22 12 11 43 43 H 1.09003 * 109.47074 * 60.00579 * 22 12 11 44 44 H 1.08998 * 109.47142 * 180.02562 * 23 22 12 45 45 H 1.08995 * 109.46935 * 59.99800 * 23 22 12 46 46 H 1.08996 * 109.47766 * 300.00305 * 24 23 22 47 47 H 1.09003 * 109.47165 * 180.02562 * 24 23 22 48 48 H 1.09004 * 109.47132 * 179.97438 * 25 24 23 49 49 H 1.08995 * 109.47785 * 59.99649 * 25 24 23 50 50 H 1.09003 * 109.46897 * 299.99628 * 26 12 11 51 51 H 1.08998 * 109.47225 * 59.99917 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 -0.0006 5 6 2.4273 -1.6834 -1.4378 6 1 1.5243 -1.7025 -2.0481 7 6 3.4044 -0.6517 -2.0048 8 6 3.0714 -3.0457 -1.4510 9 8 3.2248 -3.6540 -0.4130 10 7 3.4770 -3.5880 -2.6162 11 6 4.1037 -4.9122 -2.6290 12 6 4.3887 -5.3277 -4.0736 13 7 5.1865 -4.2900 -4.7318 14 6 6.4409 -3.9944 -4.2693 15 1 6.8083 -4.4625 -3.3680 16 6 7.2404 -3.0931 -4.9588 17 7 6.7928 -2.5230 -6.0574 18 14 8.9520 -2.6904 -4.3282 19 1 9.9330 -3.6338 -4.9221 20 1 9.3067 -1.3005 -4.7124 21 1 8.9768 -2.8167 -2.8488 22 6 5.1624 -6.6475 -4.0816 23 6 5.4480 -7.0627 -5.5263 24 6 4.1264 -7.2418 -6.2761 25 6 3.3527 -5.9218 -6.2682 26 6 3.0669 -5.5068 -4.8231 27 1 -0.5401 -0.9352 -0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 2.2453 1.6197 -1.0277 30 1 1.4745 2.0647 0.5139 31 1 3.0160 1.1746 0.5138 32 1 1.4384 -2.0857 0.4334 33 1 2.9741 -1.1992 0.5888 34 1 4.3074 -0.6326 -1.3945 35 1 3.6633 -0.9209 -3.0289 36 1 2.9385 0.3337 -1.9953 37 1 3.3547 -3.1014 -3.4463 38 1 3.4319 -5.6366 -2.1685 39 1 5.0387 -4.8772 -2.0699 40 1 4.8244 -3.8096 -5.4928 41 1 7.3515 -1.8935 -6.5394 42 1 6.1041 -6.5199 -3.5477 43 1 4.5689 -7.4196 -3.5919 44 1 5.9988 -8.0032 -5.5319 45 1 6.0416 -6.2906 -6.0156 46 1 3.5326 -8.0138 -5.7868 47 1 4.3297 -7.5380 -7.3052 48 1 2.4113 -6.0492 -6.8028 49 1 3.9463 -5.1497 -6.7575 50 1 2.4733 -6.2789 -4.3334 51 1 2.5157 -4.5665 -4.8174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115685007.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:07 Heat of formation + Delta-G solvation = -42.090425 kcal Electronic energy + Delta-G solvation = -27197.478827 eV Core-core repulsion = 23710.055774 eV Total energy + Delta-G solvation = -3487.423052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.74635 -38.60451 -36.67080 -34.40130 -33.30356 -32.60931 -31.00041 -30.22669 -28.54861 -27.89040 -26.38661 -25.51845 -23.78739 -22.92592 -22.02125 -20.40334 -19.51790 -18.33771 -18.29280 -17.17898 -16.67830 -15.60595 -15.32589 -15.09025 -14.57128 -14.46093 -14.07153 -13.99620 -13.86743 -13.58284 -13.43838 -13.31600 -12.79493 -12.73898 -12.31410 -11.94308 -11.91411 -11.82936 -11.69718 -11.55692 -11.54395 -11.12416 -11.03390 -10.98739 -10.88360 -10.80347 -10.76373 -10.53871 -10.17651 -10.04018 -9.79980 -9.63008 -9.39651 -9.29801 -8.98271 -8.85476 -8.37328 -7.01067 -5.81141 -3.09649 2.16230 3.12522 3.40550 3.47594 3.48549 3.78402 4.56044 4.78603 4.86539 5.01733 5.19442 5.21099 5.26790 5.27823 5.30181 5.45595 5.52772 5.56708 5.61157 5.61965 5.74091 5.77117 5.83656 5.86104 5.94603 5.98567 6.00225 6.04911 6.05188 6.12437 6.17425 6.21155 6.26370 6.31925 6.44605 6.45740 6.52168 6.59468 6.60478 6.80310 6.82371 6.83138 6.84673 6.99682 7.13084 7.20873 7.71131 8.12284 8.37024 8.76006 9.49688 10.02554 10.39361 11.40819 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.011783 B = 0.004586 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.796852 B = 6104.683146 C = 7572.065693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.123 4.123 4 C -0.066 4.066 5 C -0.102 4.102 6 H 0.091 0.909 7 C -0.149 4.149 8 C 0.511 3.489 9 O -0.560 6.560 10 N -0.699 5.699 11 C 0.115 3.885 12 C 0.191 3.809 13 N -0.709 5.709 14 C -0.228 4.228 15 H 0.068 0.932 16 C -0.008 4.008 17 N -0.931 5.931 18 Si 0.898 3.102 19 H -0.291 1.291 20 H -0.293 1.293 21 H -0.283 1.283 22 C -0.114 4.114 23 C -0.109 4.109 24 C -0.112 4.112 25 C -0.115 4.115 26 C -0.113 4.113 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.403 0.597 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.083 0.917 46 H 0.048 0.952 47 H 0.051 0.949 48 H 0.048 0.952 49 H 0.074 0.926 50 H 0.058 0.942 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.485 0.542 4.683 12.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.116 4.116 3 C -0.180 4.180 4 C -0.104 4.104 5 C -0.123 4.123 6 H 0.109 0.891 7 C -0.206 4.206 8 C 0.297 3.703 9 O -0.439 6.439 10 N -0.348 5.348 11 C -0.012 4.012 12 C 0.099 3.901 13 N -0.351 5.351 14 C -0.359 4.359 15 H 0.086 0.914 16 C -0.203 4.203 17 N -0.580 5.580 18 Si 0.730 3.270 19 H -0.219 1.219 20 H -0.220 1.220 21 H -0.209 1.209 22 C -0.154 4.154 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.153 4.153 26 C -0.151 4.151 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.239 0.761 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.219 0.781 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.102 0.898 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.067 0.933 49 H 0.093 0.907 50 H 0.077 0.923 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.187 0.114 5.466 12.451 hybrid contribution 0.941 0.633 -0.349 1.186 sum -10.246 0.748 5.118 11.477 Atomic orbital electron populations 1.23652 0.95234 1.01627 1.03564 1.21793 0.95343 0.95836 0.98599 1.21021 1.00245 0.94410 1.02282 1.20506 1.00610 0.93933 0.95355 1.21234 0.99803 0.93136 0.98132 0.89076 1.21930 0.98643 0.98187 1.01859 1.20519 0.78657 0.87338 0.83769 1.90640 1.57406 1.63576 1.32316 1.45787 1.59955 1.19890 1.09203 1.21849 0.96888 0.82978 0.99437 1.19815 0.90582 0.89913 0.89789 1.42436 1.15299 1.40626 1.36744 1.19063 0.91028 1.19987 1.05809 0.91401 1.24638 0.98040 1.00395 0.97275 1.69641 1.36903 1.33080 1.18335 0.86327 0.85318 0.77308 0.78096 1.21850 1.21970 1.20906 1.21787 1.00392 0.96420 0.96815 1.21373 0.96648 1.00587 0.96083 1.21469 0.97111 0.96945 0.99455 1.21480 0.99172 0.98173 0.96451 1.21691 0.96887 1.00504 0.96022 0.88581 0.88716 0.90932 0.92207 0.91677 0.90688 0.90670 0.92095 0.91367 0.91410 0.76145 0.93082 0.91969 0.78089 0.93651 0.91808 0.93791 0.93825 0.89810 0.93277 0.93061 0.93341 0.90711 0.92345 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.04 13.89 29.02 0.40 -1.64 16 2 C -0.12 -1.26 4.94 -101.06 -0.50 -1.76 16 3 C -0.12 -1.17 9.01 36.00 0.32 -0.85 16 4 C -0.07 -0.86 4.22 -27.88 -0.12 -0.98 16 5 C -0.10 -1.38 2.71 -91.77 -0.25 -1.63 16 6 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 7 C -0.15 -2.00 8.64 37.16 0.32 -1.68 16 8 C 0.51 8.82 7.15 -10.99 -0.08 8.74 16 9 O -0.56 -11.46 15.92 5.56 0.09 -11.37 16 10 N -0.70 -11.96 4.99 -60.30 -0.30 -12.26 16 11 C 0.11 2.08 4.37 -4.04 -0.02 2.06 16 12 C 0.19 3.36 0.41 -131.82 -0.05 3.30 16 13 N -0.71 -15.05 3.40 -47.23 -0.16 -15.21 16 14 C -0.23 -5.64 8.70 -15.06 -0.13 -5.77 16 15 H 0.07 1.72 6.77 -52.49 -0.36 1.37 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 17 N -0.93 -25.84 13.07 55.49 0.73 -25.11 16 18 Si 0.90 21.67 29.55 -169.99 -5.02 16.65 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C -0.11 -1.97 4.52 -26.73 -0.12 -2.09 16 23 C -0.11 -1.84 5.77 -26.73 -0.15 -2.00 16 24 C -0.11 -1.64 5.92 -26.73 -0.16 -1.80 16 25 C -0.12 -1.73 5.75 -26.70 -0.15 -1.88 16 26 C -0.11 -1.71 4.65 -26.71 -0.12 -1.83 16 27 H 0.10 0.94 7.99 -52.49 -0.42 0.52 16 28 H 0.09 0.82 8.04 -52.48 -0.42 0.40 16 29 H 0.07 0.66 6.39 -51.93 -0.33 0.33 16 30 H 0.06 0.50 8.06 -51.93 -0.42 0.08 16 31 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.07 1.02 7.80 -51.93 -0.41 0.62 16 33 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.00 7.57 -51.93 -0.39 0.60 16 36 H 0.07 0.77 5.08 -51.93 -0.26 0.51 16 37 H 0.40 6.70 6.81 -40.82 -0.28 6.42 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.29 7.51 -51.93 -0.39 0.90 16 40 H 0.38 8.78 6.64 -40.82 -0.27 8.51 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.06 1.21 7.23 -51.93 -0.38 0.84 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.08 1.71 7.60 -51.93 -0.39 1.31 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 1.30 6.92 -51.93 -0.36 0.94 16 50 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 51 H 0.06 0.84 7.28 -51.93 -0.38 0.46 16 LS Contribution 389.84 15.07 5.87 5.87 Total: -1.00 -27.97 389.84 -8.94 -36.91 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: -9.24 Total: 14.62 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -0.90 Total: -10.10 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.26 Total: -52.59 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -27.97 -8.94 -36.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115685007.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.181 kcal (2) G-P(sol) polarization free energy of solvation -27.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds