Wall clock time and date at job start Fri Apr 10 2020 22:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00494 * 2 1 4 4 C 1.50707 * 119.99589 * 180.02562 * 2 1 3 5 5 C 1.53005 * 109.47081 * 95.00062 * 4 2 1 6 6 H 1.09003 * 109.46740 * 304.99808 * 5 4 2 7 7 C 1.52995 * 109.47071 * 64.99895 * 5 4 2 8 8 C 1.50694 * 109.46887 * 185.00015 * 5 4 2 9 9 O 1.21281 * 120.00115 * 359.97438 * 8 5 4 10 10 N 1.34775 * 119.99788 * 179.97438 * 8 5 4 11 11 C 1.46508 * 120.00083 * 179.97438 * 10 8 5 12 12 C 1.52995 * 109.47100 * 176.55067 * 11 10 8 13 13 N 1.46507 * 109.47025 * 54.64213 * 12 11 10 14 14 C 1.36933 * 120.00158 * 62.76893 * 13 12 11 15 15 H 1.08001 * 119.99777 * 354.57439 * 14 13 12 16 16 C 1.38811 * 120.00296 * 174.57769 * 14 13 12 17 17 N 1.31618 * 119.99669 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00215 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47074 * 89.99620 * 18 16 14 20 20 H 1.48494 * 109.46900 * 209.99771 * 18 16 14 21 21 H 1.48499 * 109.46828 * 329.99536 * 18 16 14 22 22 C 1.52998 * 109.47055 * 174.63671 * 12 11 10 23 23 C 1.53005 * 109.47284 * 180.02562 * 22 12 11 24 24 C 1.53002 * 109.46897 * 300.00057 * 23 22 12 25 25 C 1.53003 * 109.47040 * 60.00390 * 24 23 22 26 26 C 1.52999 * 109.47571 * 294.64280 * 12 11 10 27 27 H 1.07997 * 120.00539 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99420 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47468 * 270.00205 * 3 2 1 30 30 H 1.09002 * 109.47024 * 30.00172 * 3 2 1 31 31 H 1.08999 * 109.47260 * 150.00129 * 3 2 1 32 32 H 1.09000 * 109.47311 * 335.00102 * 4 2 1 33 33 H 1.09000 * 109.46791 * 214.99376 * 4 2 1 34 34 H 1.09003 * 109.47410 * 60.00323 * 7 5 4 35 35 H 1.09003 * 109.47123 * 180.02562 * 7 5 4 36 36 H 1.08999 * 109.47273 * 299.99778 * 7 5 4 37 37 H 0.97003 * 120.00266 * 0.02562 * 10 8 5 38 38 H 1.09000 * 109.46747 * 56.55720 * 11 10 8 39 39 H 1.08994 * 109.47496 * 296.55550 * 11 10 8 40 40 H 0.97004 * 119.99699 * 243.04530 * 13 12 11 41 41 H 0.96996 * 119.99852 * 180.02562 * 17 16 14 42 42 H 1.08995 * 109.47368 * 300.00645 * 22 12 11 43 43 H 1.09003 * 109.47074 * 60.00579 * 22 12 11 44 44 H 1.08998 * 109.47142 * 180.02562 * 23 22 12 45 45 H 1.08995 * 109.46935 * 59.99800 * 23 22 12 46 46 H 1.08996 * 109.47766 * 300.00305 * 24 23 22 47 47 H 1.09003 * 109.47165 * 180.02562 * 24 23 22 48 48 H 1.09004 * 109.47132 * 179.97438 * 25 24 23 49 49 H 1.08995 * 109.47785 * 59.99649 * 25 24 23 50 50 H 1.09003 * 109.46897 * 299.99628 * 26 12 11 51 51 H 1.08998 * 109.47225 * 59.99917 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 -0.0006 5 6 2.4273 -1.6834 -1.4378 6 1 1.5243 -1.7025 -2.0481 7 6 3.4044 -0.6517 -2.0048 8 6 3.0714 -3.0457 -1.4510 9 8 3.2248 -3.6540 -0.4130 10 7 3.4770 -3.5880 -2.6162 11 6 4.1037 -4.9122 -2.6290 12 6 4.3887 -5.3277 -4.0736 13 7 5.1865 -4.2900 -4.7318 14 6 6.4409 -3.9944 -4.2693 15 1 6.8083 -4.4625 -3.3680 16 6 7.2404 -3.0931 -4.9588 17 7 6.7928 -2.5230 -6.0574 18 14 8.9520 -2.6904 -4.3282 19 1 9.9330 -3.6338 -4.9221 20 1 9.3067 -1.3005 -4.7124 21 1 8.9768 -2.8167 -2.8488 22 6 5.1624 -6.6475 -4.0816 23 6 5.4480 -7.0627 -5.5263 24 6 4.1264 -7.2418 -6.2761 25 6 3.3527 -5.9218 -6.2682 26 6 3.0669 -5.5068 -4.8231 27 1 -0.5401 -0.9352 -0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 2.2453 1.6197 -1.0277 30 1 1.4745 2.0647 0.5139 31 1 3.0160 1.1746 0.5138 32 1 1.4384 -2.0857 0.4334 33 1 2.9741 -1.1992 0.5888 34 1 4.3074 -0.6326 -1.3945 35 1 3.6633 -0.9209 -3.0289 36 1 2.9385 0.3337 -1.9953 37 1 3.3547 -3.1014 -3.4463 38 1 3.4319 -5.6366 -2.1685 39 1 5.0387 -4.8772 -2.0699 40 1 4.8244 -3.8096 -5.4928 41 1 7.3515 -1.8935 -6.5394 42 1 6.1041 -6.5199 -3.5477 43 1 4.5689 -7.4196 -3.5919 44 1 5.9988 -8.0032 -5.5319 45 1 6.0416 -6.2906 -6.0156 46 1 3.5326 -8.0138 -5.7868 47 1 4.3297 -7.5380 -7.3052 48 1 2.4113 -6.0492 -6.8028 49 1 3.9463 -5.1497 -6.7575 50 1 2.4733 -6.2789 -4.3334 51 1 2.5157 -4.5665 -4.8174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115685007.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:06 Heat of formation + Delta-G solvation = -56.724695 kcal Electronic energy + Delta-G solvation = -27198.113416 eV Core-core repulsion = 23710.055774 eV Total energy + Delta-G solvation = -3488.057642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.14631 -39.98712 -37.69776 -35.86169 -35.05341 -33.76955 -32.58678 -31.54746 -30.22658 -28.75458 -27.35594 -26.85838 -25.69324 -24.16052 -23.33772 -21.74728 -20.87422 -19.78462 -19.22606 -19.02081 -17.97867 -17.03193 -16.66621 -16.54042 -16.00024 -15.72183 -15.49611 -15.39422 -15.02087 -14.84460 -14.74893 -14.51478 -14.29366 -13.92640 -13.57483 -13.39890 -13.25463 -13.10683 -12.90877 -12.86407 -12.82064 -12.59658 -12.49952 -12.42344 -12.14922 -12.05489 -11.94858 -11.87838 -11.80889 -11.67111 -11.30897 -11.08918 -10.84967 -10.70021 -10.62055 -9.86766 -9.84612 -8.89165 -7.86479 -5.10418 1.34342 1.44037 1.47491 1.52176 1.72692 2.43320 2.59824 3.46388 3.70658 3.82066 3.89287 3.93892 3.97237 4.02977 4.14438 4.22691 4.24945 4.39512 4.45463 4.49196 4.67454 4.68909 4.70842 4.76667 4.78292 4.81824 4.84759 4.90320 4.92060 4.96616 5.00515 5.07758 5.10421 5.16592 5.18501 5.20355 5.22361 5.37040 5.46888 5.50080 5.51582 5.59633 5.62537 5.71353 5.78228 5.81473 6.02659 6.36430 6.71109 7.35391 7.45626 8.17855 8.44726 9.35791 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.011783 B = 0.004586 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.796852 B = 6104.683146 C = 7572.065693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 C -0.122 4.122 4 C -0.061 4.061 5 C -0.092 4.092 6 H 0.114 0.886 7 C -0.142 4.142 8 C 0.506 3.494 9 O -0.595 6.595 10 N -0.696 5.696 11 C 0.121 3.879 12 C 0.190 3.810 13 N -0.707 5.707 14 C -0.205 4.205 15 H 0.058 0.942 16 C -0.059 4.059 17 N -0.958 5.958 18 Si 0.943 3.057 19 H -0.294 1.294 20 H -0.299 1.299 21 H -0.284 1.284 22 C -0.114 4.114 23 C -0.106 4.106 24 C -0.108 4.108 25 C -0.112 4.112 26 C -0.107 4.107 27 H 0.097 0.903 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.406 0.594 38 H 0.063 0.937 39 H 0.028 0.972 40 H 0.377 0.623 41 H 0.246 0.754 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.041 0.959 46 H 0.073 0.927 47 H 0.059 0.941 48 H 0.075 0.925 49 H 0.044 0.956 50 H 0.081 0.919 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.861 0.250 4.724 14.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.130 4.130 3 C -0.179 4.179 4 C -0.099 4.099 5 C -0.113 4.113 6 H 0.132 0.868 7 C -0.200 4.200 8 C 0.294 3.706 9 O -0.477 6.477 10 N -0.346 5.346 11 C -0.005 4.005 12 C 0.099 3.901 13 N -0.348 5.348 14 C -0.338 4.338 15 H 0.076 0.924 16 C -0.252 4.252 17 N -0.609 5.609 18 Si 0.775 3.225 19 H -0.222 1.222 20 H -0.226 1.226 21 H -0.210 1.210 22 C -0.153 4.153 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.149 4.149 26 C -0.145 4.145 27 H 0.116 0.884 28 H 0.131 0.869 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.243 0.757 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.211 0.789 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.092 0.908 47 H 0.078 0.922 48 H 0.093 0.907 49 H 0.063 0.937 50 H 0.100 0.900 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.576 -0.199 5.520 14.657 hybrid contribution 1.628 0.635 -0.283 1.770 sum -11.948 0.437 5.237 13.053 Atomic orbital electron populations 1.23841 0.94868 1.02613 1.01505 1.21721 0.95677 0.95186 1.00414 1.21024 1.00078 0.94084 1.02700 1.20411 1.00002 0.95088 0.94370 1.21242 1.00210 0.90655 0.99230 0.86799 1.21886 0.98126 0.99474 1.00494 1.21211 0.78036 0.88365 0.83018 1.90619 1.58831 1.64788 1.33425 1.45803 1.59597 1.19626 1.09524 1.21717 0.95709 0.83938 0.99177 1.20012 0.91685 0.88935 0.89440 1.42445 1.14460 1.41443 1.36449 1.19147 0.92021 1.18061 1.04534 0.92360 1.25087 1.00372 1.01665 0.98063 1.69739 1.37456 1.34227 1.19475 0.85597 0.82967 0.76550 0.77376 1.22184 1.22553 1.21037 1.21774 0.99486 0.96893 0.97171 1.21300 0.97805 0.99706 0.95545 1.21449 0.95785 0.97404 0.99854 1.21441 0.99952 0.97392 0.96162 1.21663 0.95203 1.01670 0.95942 0.88449 0.86881 0.90478 0.90689 0.92327 0.91623 0.92377 0.93814 0.92659 0.88883 0.75719 0.91853 0.95347 0.78870 0.94455 0.94438 0.91067 0.92551 0.94021 0.90833 0.92239 0.90686 0.93746 0.90008 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.31 13.89 67.78 0.94 -2.37 16 2 C -0.13 -2.59 4.94 -16.48 -0.08 -2.67 16 3 C -0.12 -2.09 9.01 71.24 0.64 -1.45 16 4 C -0.06 -1.54 4.22 29.85 0.13 -1.41 16 5 C -0.09 -2.43 2.71 -11.54 -0.03 -2.46 16 6 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 7 C -0.14 -3.74 8.64 71.98 0.62 -3.11 16 8 C 0.51 17.38 7.15 87.66 0.63 18.00 16 9 O -0.59 -24.58 15.92 -3.03 -0.05 -24.63 16 10 N -0.70 -23.63 4.99 -463.07 -2.31 -25.94 16 11 C 0.12 4.36 4.37 86.38 0.38 4.74 16 12 C 0.19 6.54 0.41 3.60 0.00 6.54 16 13 N -0.71 -30.41 3.40 -303.35 -1.03 -31.44 16 14 C -0.21 -10.39 8.70 84.03 0.73 -9.66 16 15 H 0.06 3.05 6.77 -2.91 -0.02 3.03 16 16 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 17 N -0.96 -54.35 13.07 21.65 0.28 -54.06 16 18 Si 0.94 45.64 29.55 68.60 2.03 47.67 16 19 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 20 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 21 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 22 C -0.11 -3.81 4.52 30.60 0.14 -3.67 16 23 C -0.11 -3.46 5.77 30.60 0.18 -3.29 16 24 C -0.11 -2.86 5.92 30.60 0.18 -2.68 16 25 C -0.11 -3.09 5.75 30.61 0.18 -2.91 16 26 C -0.11 -2.97 4.65 30.61 0.14 -2.83 16 27 H 0.10 1.65 7.99 -2.91 -0.02 1.63 16 28 H 0.11 1.56 8.04 -2.91 -0.02 1.54 16 29 H 0.08 1.23 6.39 -2.39 -0.02 1.21 16 30 H 0.07 1.05 8.06 -2.39 -0.02 1.03 16 31 H 0.06 1.07 8.08 -2.39 -0.02 1.05 16 32 H 0.07 1.76 7.80 -2.39 -0.02 1.74 16 33 H 0.06 1.64 8.10 -2.39 -0.02 1.62 16 34 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.05 1.59 7.57 -2.39 -0.02 1.57 16 36 H 0.09 1.96 5.08 -2.39 -0.01 1.95 16 37 H 0.41 13.30 6.81 -92.71 -0.63 12.67 16 38 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.03 1.21 7.51 -2.39 -0.02 1.19 16 40 H 0.38 17.49 6.64 -92.70 -0.62 16.88 16 41 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 42 H 0.04 1.43 7.23 -2.39 -0.02 1.42 16 43 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.04 1.71 7.60 -2.39 -0.02 1.69 16 46 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.04 1.51 6.92 -2.39 -0.02 1.49 16 50 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 51 H 0.06 1.68 7.28 -2.39 -0.02 1.66 16 Total: -1.00 -61.79 389.84 3.81 -57.98 By element: Atomic # 1 Polarization: 42.72 SS G_CDS: -0.35 Total: 42.38 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 5.24 Total: -11.95 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -3.06 Total: -111.44 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.05 Total: -24.63 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -61.79 3.81 -57.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115685007.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.254 kcal (2) G-P(sol) polarization free energy of solvation -61.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds