Wall clock time and date at job start Fri Apr 10 2020 22:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53187 * 109.31314 * 58.64645 * 4 2 1 6 6 N 1.46921 * 108.77794 * 54.63631 * 5 4 2 7 7 C 1.34775 * 120.63610 * 126.41490 * 6 5 4 8 8 O 1.21279 * 120.00474 * 179.97438 * 7 6 5 9 9 C 1.50700 * 119.99525 * 359.97365 * 7 6 5 10 10 C 1.52998 * 109.47068 * 180.02562 * 9 7 6 11 11 C 1.54266 * 110.03410 * 292.16800 * 10 9 7 12 12 C 1.54890 * 104.19830 * 217.10795 * 11 10 9 13 13 C 1.54883 * 102.75077 * 37.93893 * 12 11 10 14 14 C 1.53880 * 110.03290 * 175.00374 * 10 9 7 15 15 C 1.46931 * 118.73731 * 306.38846 * 6 5 4 16 16 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 17 17 H 1.08994 * 109.49602 * 181.37331 * 16 2 1 18 18 C 1.53005 * 109.49407 * 61.31095 * 16 2 1 19 19 N 1.46497 * 109.46686 * 174.99639 * 18 16 2 20 20 C 1.36941 * 119.99619 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00239 * 0.02562 * 20 19 18 22 22 C 1.38813 * 119.99827 * 180.02562 * 20 19 18 23 23 N 1.31615 * 119.99944 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99869 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47214 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46835 * 120.00453 * 24 22 20 27 27 H 1.48500 * 109.47088 * 240.00122 * 24 22 20 28 28 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 30 30 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 31 31 H 1.08992 * 109.49694 * 178.60260 * 4 2 1 32 32 H 1.09007 * 109.49236 * 298.69458 * 4 2 1 33 33 H 1.09007 * 109.58834 * 294.84955 * 5 4 2 34 34 H 1.09001 * 109.58662 * 174.42524 * 5 4 2 35 35 H 1.09002 * 109.47351 * 300.00520 * 9 7 6 36 36 H 1.09002 * 109.46897 * 60.00389 * 9 7 6 37 37 H 1.08998 * 110.01967 * 53.61219 * 10 9 7 38 38 H 1.09001 * 110.48837 * 335.78686 * 11 10 9 39 39 H 1.08994 * 110.48555 * 98.42789 * 11 10 9 40 40 H 1.08999 * 110.75178 * 279.62865 * 12 11 10 41 41 H 1.08996 * 110.75819 * 156.25821 * 12 11 10 42 42 H 1.08995 * 110.49283 * 203.37995 * 13 12 11 43 43 H 1.09000 * 110.59805 * 80.79139 * 13 12 11 44 44 H 1.08997 * 110.03130 * 238.57292 * 14 10 9 45 45 H 1.08999 * 110.03383 * 359.94983 * 14 10 9 46 46 H 1.08997 * 109.58885 * 293.82300 * 15 6 5 47 47 H 1.09000 * 109.58325 * 173.39370 * 15 6 5 48 48 H 1.08996 * 109.47305 * 294.99975 * 18 16 2 49 49 H 1.09008 * 109.47037 * 55.00272 * 18 16 2 50 50 H 0.96997 * 120.00098 * 0.02562 * 19 18 16 51 51 H 0.97000 * 119.99925 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 1.4989 -2.1541 1.2643 6 7 1.8619 -2.8090 0.0002 7 6 2.5147 -3.9881 0.0002 8 8 2.8083 -4.5188 -1.0500 9 6 2.8798 -4.6471 1.3054 10 6 3.6088 -5.9628 1.0259 11 6 2.6383 -6.9804 0.3917 12 6 3.0567 -8.3389 1.0071 13 6 3.4070 -7.9593 2.4672 14 6 4.0976 -6.5852 2.3456 15 6 1.4992 -2.1542 -1.2642 16 6 2.0399 -0.7210 -1.2500 17 1 3.1295 -0.7427 -1.2384 18 6 1.5571 0.0193 -2.4990 19 7 2.1427 -0.6001 -3.6905 20 6 1.8523 -0.1034 -4.9332 21 1 1.1920 0.7451 -5.0348 22 6 2.4067 -0.6906 -6.0622 23 7 3.2110 -1.7250 -5.9384 24 14 2.0101 -0.0135 -7.7575 25 1 1.0881 1.1431 -7.6253 26 1 3.2639 0.4266 -8.4204 27 1 1.3634 -1.0717 -8.5743 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 3.1292 -0.7431 1.2386 32 1 1.6954 -0.1934 2.1399 33 1 0.4139 -2.1344 1.3673 34 1 1.9373 -2.7018 2.0986 35 1 3.5308 -3.9855 1.8769 36 1 1.9736 -4.8477 1.8770 37 1 4.4540 -5.7870 0.3605 38 1 1.6084 -6.7423 0.6575 39 1 2.7591 -6.9989 -0.6914 40 1 3.9287 -8.7434 0.4933 41 1 2.2283 -9.0467 0.9801 42 1 4.0888 -8.6920 2.8989 43 1 2.5026 -7.8796 3.0703 44 1 5.1799 -6.7122 2.3203 45 1 3.8162 -5.9495 3.1851 46 1 0.4143 -2.1345 -1.3674 47 1 1.9378 -2.7020 -2.0982 48 1 0.4702 -0.0368 -2.5573 49 1 1.8647 1.0636 -2.4441 50 1 2.7360 -1.3620 -3.5992 51 1 3.5987 -2.1351 -6.7273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132606805.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:23 Heat of formation + Delta-G solvation = -52.798148 kcal Electronic energy + Delta-G solvation = -26754.022874 eV Core-core repulsion = 23266.135500 eV Total energy + Delta-G solvation = -3487.887374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.40713 -38.72742 -37.38174 -34.89795 -33.45843 -31.98332 -31.46582 -29.76535 -28.74655 -27.69764 -26.51146 -25.02911 -24.19681 -23.09959 -21.15758 -20.81306 -20.08142 -19.27880 -18.05752 -17.19882 -16.79872 -16.16304 -15.53785 -15.30955 -14.96611 -14.82317 -14.81355 -14.25431 -13.81449 -13.53851 -13.43655 -13.31427 -13.01552 -12.92325 -12.63634 -12.41544 -12.14335 -11.85914 -11.60234 -11.36691 -11.24252 -11.13640 -11.03929 -11.02068 -10.91134 -10.80806 -10.76427 -10.67826 -10.57869 -10.47418 -10.23243 -10.13508 -9.89123 -9.58704 -9.40344 -8.81278 -8.34754 -6.84320 -5.67978 -2.97577 2.86325 3.16867 3.48015 3.52818 3.55719 4.40566 4.50005 4.57587 4.63067 4.73078 4.76251 4.87389 4.97884 5.07142 5.17575 5.22655 5.29880 5.33065 5.36142 5.45730 5.53665 5.54846 5.60263 5.64772 5.67669 5.69587 5.71806 5.73457 5.79296 5.85051 5.93684 5.94230 5.99904 6.02562 6.05061 6.19033 6.20899 6.29778 6.35755 6.38237 6.40928 6.44843 6.64008 6.74272 6.82896 6.94101 7.62924 7.76562 8.43606 8.49729 9.60717 10.19278 10.53412 11.54369 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.013510 B = 0.003553 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.095306 B = 7879.054138 C = 9600.423361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.129 4.129 5 C 0.106 3.894 6 N -0.614 5.614 7 C 0.507 3.493 8 O -0.527 6.527 9 C -0.131 4.131 10 C -0.078 4.078 11 C -0.114 4.114 12 C -0.127 4.127 13 C -0.124 4.124 14 C -0.121 4.121 15 C 0.120 3.880 16 C -0.102 4.102 17 H 0.072 0.928 18 C 0.161 3.839 19 N -0.733 5.733 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.929 5.929 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.102 0.898 48 H 0.022 0.978 49 H 0.020 0.980 50 H 0.385 0.615 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.629 -6.117 23.434 24.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.167 4.167 5 C -0.017 4.017 6 N -0.348 5.348 7 C 0.295 3.705 8 O -0.403 6.403 9 C -0.171 4.171 10 C -0.097 4.097 11 C -0.151 4.151 12 C -0.165 4.165 13 C -0.162 4.162 14 C -0.159 4.159 15 C -0.002 4.002 16 C -0.121 4.121 17 H 0.091 0.909 18 C 0.033 3.967 19 N -0.378 5.378 20 C -0.372 4.372 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.577 5.577 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.120 0.880 48 H 0.040 0.960 49 H 0.037 0.963 50 H 0.219 0.781 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.542 -6.310 22.729 23.725 hybrid contribution -0.002 0.322 -0.876 0.933 sum -2.544 -5.988 21.853 22.801 Atomic orbital electron populations 1.21983 0.95274 1.01960 1.01736 1.21069 0.95980 0.99332 0.93993 0.90931 1.21944 1.01128 0.95232 0.98431 1.21736 1.00220 0.93677 0.86065 1.48208 1.57811 1.21272 1.07467 1.20687 0.77535 0.80712 0.91568 1.90753 1.53005 1.63008 1.33506 1.21864 1.01827 0.97621 0.95807 1.21555 0.98654 0.93025 0.96470 1.22387 0.98217 0.93367 1.01152 1.22529 1.00922 0.97526 0.95525 1.22347 1.00072 0.96633 0.97110 1.22234 1.00192 0.96350 0.97109 1.21704 0.99681 0.92865 0.85916 1.21679 1.00793 0.94584 0.95071 0.90946 1.20679 0.95924 0.94690 0.85447 1.42433 1.56844 1.37680 1.00831 1.19242 1.23210 1.10917 0.83802 0.91229 1.24757 1.00090 0.98329 0.97794 1.69687 1.35484 1.24191 1.28362 0.86146 0.77370 0.77947 0.84897 1.20621 1.21934 1.21885 0.92447 0.93201 0.91818 0.91563 0.90979 0.91285 0.90259 0.89312 0.89303 0.90083 0.92224 0.90556 0.91568 0.91880 0.92030 0.91882 0.91776 0.91840 0.91656 0.88016 0.96004 0.96268 0.78108 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.11 37.16 0.30 -1.43 16 2 C -0.08 -1.04 2.71 -90.57 -0.25 -1.29 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -1.27 5.62 -26.61 -0.15 -1.42 16 5 C 0.11 1.04 5.87 -3.72 -0.02 1.02 16 6 N -0.61 -8.56 2.97 -172.77 -0.51 -9.08 16 7 C 0.51 7.63 7.48 -10.99 -0.08 7.55 16 8 O -0.53 -10.43 14.24 5.56 0.08 -10.35 16 9 C -0.13 -1.37 3.18 -27.88 -0.09 -1.46 16 10 C -0.08 -0.86 2.55 -89.50 -0.23 -1.09 16 11 C -0.11 -1.33 5.43 -25.07 -0.14 -1.47 16 12 C -0.13 -1.21 6.91 -24.74 -0.17 -1.38 16 13 C -0.12 -1.00 6.83 -25.07 -0.17 -1.17 16 14 C -0.12 -1.02 6.46 -25.61 -0.17 -1.19 16 15 C 0.12 2.05 5.05 -3.71 -0.02 2.03 16 16 C -0.10 -1.68 2.15 -90.49 -0.19 -1.88 16 17 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 18 C 0.16 3.27 5.19 -4.04 -0.02 3.24 16 19 N -0.73 -19.21 5.38 -59.91 -0.32 -19.53 16 20 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 21 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -29.29 13.06 55.49 0.72 -28.57 16 24 Si 0.91 23.05 29.55 -169.99 -5.02 18.03 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H 0.06 0.66 4.98 -51.93 -0.26 0.40 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.80 6.58 -51.92 -0.34 0.46 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.07 0.62 6.69 -51.92 -0.35 0.27 16 34 H 0.08 0.59 5.93 -51.93 -0.31 0.28 16 35 H 0.09 0.77 7.69 -51.93 -0.40 0.37 16 36 H 0.09 0.76 7.81 -51.93 -0.41 0.35 16 37 H 0.08 1.06 7.92 -51.93 -0.41 0.65 16 38 H 0.06 0.69 7.76 -51.93 -0.40 0.28 16 39 H 0.08 1.09 7.66 -51.93 -0.40 0.69 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.45 7.67 -51.93 -0.40 0.06 16 46 H 0.07 1.09 6.69 -51.93 -0.35 0.74 16 47 H 0.10 2.20 6.22 -51.93 -0.32 1.88 16 48 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 49 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 50 H 0.38 10.83 6.90 -40.82 -0.28 10.54 16 51 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -33.42 378.47 -10.16 -43.58 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -9.17 Total: 7.71 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.64 Total: -7.50 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.11 Total: -57.17 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.35 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.42 -10.16 -43.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132606805.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.221 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds