Wall clock time and date at job start Fri Apr 10 2020 22:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53187 * 109.31314 * 58.64645 * 4 2 1 6 6 N 1.46921 * 108.77794 * 54.63631 * 5 4 2 7 7 C 1.34775 * 120.63610 * 126.41490 * 6 5 4 8 8 O 1.21279 * 120.00474 * 179.97438 * 7 6 5 9 9 C 1.50700 * 119.99525 * 359.97365 * 7 6 5 10 10 C 1.52998 * 109.47068 * 180.02562 * 9 7 6 11 11 C 1.54266 * 110.03410 * 292.16800 * 10 9 7 12 12 C 1.54890 * 104.19830 * 217.10795 * 11 10 9 13 13 C 1.54883 * 102.75077 * 37.93893 * 12 11 10 14 14 C 1.53880 * 110.03290 * 175.00374 * 10 9 7 15 15 C 1.46931 * 118.73731 * 306.38846 * 6 5 4 16 16 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 17 17 H 1.08994 * 109.49602 * 181.37331 * 16 2 1 18 18 C 1.53005 * 109.49407 * 61.31095 * 16 2 1 19 19 N 1.46497 * 109.46686 * 174.99639 * 18 16 2 20 20 C 1.36941 * 119.99619 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00239 * 0.02562 * 20 19 18 22 22 C 1.38813 * 119.99827 * 180.02562 * 20 19 18 23 23 N 1.31615 * 119.99944 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99869 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47214 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46835 * 120.00453 * 24 22 20 27 27 H 1.48500 * 109.47088 * 240.00122 * 24 22 20 28 28 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 30 30 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 31 31 H 1.08992 * 109.49694 * 178.60260 * 4 2 1 32 32 H 1.09007 * 109.49236 * 298.69458 * 4 2 1 33 33 H 1.09007 * 109.58834 * 294.84955 * 5 4 2 34 34 H 1.09001 * 109.58662 * 174.42524 * 5 4 2 35 35 H 1.09002 * 109.47351 * 300.00520 * 9 7 6 36 36 H 1.09002 * 109.46897 * 60.00389 * 9 7 6 37 37 H 1.08998 * 110.01967 * 53.61219 * 10 9 7 38 38 H 1.09001 * 110.48837 * 335.78686 * 11 10 9 39 39 H 1.08994 * 110.48555 * 98.42789 * 11 10 9 40 40 H 1.08999 * 110.75178 * 279.62865 * 12 11 10 41 41 H 1.08996 * 110.75819 * 156.25821 * 12 11 10 42 42 H 1.08995 * 110.49283 * 203.37995 * 13 12 11 43 43 H 1.09000 * 110.59805 * 80.79139 * 13 12 11 44 44 H 1.08997 * 110.03130 * 238.57292 * 14 10 9 45 45 H 1.08999 * 110.03383 * 359.94983 * 14 10 9 46 46 H 1.08997 * 109.58885 * 293.82300 * 15 6 5 47 47 H 1.09000 * 109.58325 * 173.39370 * 15 6 5 48 48 H 1.08996 * 109.47305 * 294.99975 * 18 16 2 49 49 H 1.09008 * 109.47037 * 55.00272 * 18 16 2 50 50 H 0.96997 * 120.00098 * 0.02562 * 19 18 16 51 51 H 0.97000 * 119.99925 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 1.4989 -2.1541 1.2643 6 7 1.8619 -2.8090 0.0002 7 6 2.5147 -3.9881 0.0002 8 8 2.8083 -4.5188 -1.0500 9 6 2.8798 -4.6471 1.3054 10 6 3.6088 -5.9628 1.0259 11 6 2.6383 -6.9804 0.3917 12 6 3.0567 -8.3389 1.0071 13 6 3.4070 -7.9593 2.4672 14 6 4.0976 -6.5852 2.3456 15 6 1.4992 -2.1542 -1.2642 16 6 2.0399 -0.7210 -1.2500 17 1 3.1295 -0.7427 -1.2384 18 6 1.5571 0.0193 -2.4990 19 7 2.1427 -0.6001 -3.6905 20 6 1.8523 -0.1034 -4.9332 21 1 1.1920 0.7451 -5.0348 22 6 2.4067 -0.6906 -6.0622 23 7 3.2110 -1.7250 -5.9384 24 14 2.0101 -0.0135 -7.7575 25 1 1.0881 1.1431 -7.6253 26 1 3.2639 0.4266 -8.4204 27 1 1.3634 -1.0717 -8.5743 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 3.1292 -0.7431 1.2386 32 1 1.6954 -0.1934 2.1399 33 1 0.4139 -2.1344 1.3673 34 1 1.9373 -2.7018 2.0986 35 1 3.5308 -3.9855 1.8769 36 1 1.9736 -4.8477 1.8770 37 1 4.4540 -5.7870 0.3605 38 1 1.6084 -6.7423 0.6575 39 1 2.7591 -6.9989 -0.6914 40 1 3.9287 -8.7434 0.4933 41 1 2.2283 -9.0467 0.9801 42 1 4.0888 -8.6920 2.8989 43 1 2.5026 -7.8796 3.0703 44 1 5.1799 -6.7122 2.3203 45 1 3.8162 -5.9495 3.1851 46 1 0.4143 -2.1345 -1.3674 47 1 1.9378 -2.7020 -2.0982 48 1 0.4702 -0.0368 -2.5573 49 1 1.8647 1.0636 -2.4441 50 1 2.7360 -1.3620 -3.5992 51 1 3.5987 -2.1351 -6.7273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132606805.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:22 Heat of formation + Delta-G solvation = -73.457673 kcal Electronic energy + Delta-G solvation = -26754.918738 eV Core-core repulsion = 23266.135500 eV Total energy + Delta-G solvation = -3488.783238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.54206 -39.75874 -38.42237 -36.63288 -34.87903 -33.49787 -32.56481 -31.35759 -29.51383 -28.73156 -27.82967 -26.40773 -25.21661 -24.87656 -22.56255 -21.61030 -21.09777 -20.29070 -19.35661 -18.89868 -18.07909 -17.22443 -16.81724 -16.54510 -16.37254 -15.83683 -15.78179 -15.67251 -15.27545 -14.97623 -14.66792 -14.30865 -14.24884 -14.15139 -13.88000 -13.77150 -13.10589 -13.05305 -12.90109 -12.81173 -12.62867 -12.43938 -12.13606 -12.09815 -11.96075 -11.92488 -11.91500 -11.82824 -11.71850 -11.61035 -11.51881 -11.34732 -11.24931 -11.18885 -10.96034 -10.62351 -9.51957 -9.03122 -7.96830 -5.27601 1.42898 1.45325 1.55448 1.71199 2.06795 2.53186 3.36058 3.51693 3.68503 3.72675 3.78774 3.83748 3.87055 3.94478 4.11591 4.22736 4.31097 4.34755 4.41108 4.43170 4.53983 4.57079 4.59911 4.63216 4.71782 4.76362 4.79001 4.84420 4.85694 4.91056 4.93385 4.97849 5.01930 5.10110 5.12531 5.15500 5.20164 5.25919 5.28601 5.31196 5.39254 5.41904 5.46430 5.52527 5.56386 5.59045 5.62463 6.23675 6.53190 7.28783 7.29195 8.05544 8.27745 9.26884 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.013510 B = 0.003553 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.095306 B = 7879.054138 C = 9600.423361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 H 0.077 0.923 4 C -0.123 4.123 5 C 0.098 3.902 6 N -0.611 5.611 7 C 0.495 3.505 8 O -0.591 6.591 9 C -0.119 4.119 10 C -0.081 4.081 11 C -0.116 4.116 12 C -0.127 4.127 13 C -0.118 4.118 14 C -0.114 4.114 15 C 0.130 3.870 16 C -0.089 4.089 17 H 0.047 0.953 18 C 0.159 3.841 19 N -0.749 5.749 20 C -0.245 4.245 21 H 0.079 0.921 22 C -0.081 4.081 23 N -0.973 5.973 24 Si 0.978 3.022 25 H -0.261 1.261 26 H -0.292 1.292 27 H -0.294 1.294 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.032 0.968 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.089 0.911 46 H 0.067 0.933 47 H 0.043 0.957 48 H 0.029 0.971 49 H 0.023 0.977 50 H 0.369 0.631 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.007 -4.943 27.489 28.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 H 0.096 0.904 4 C -0.161 4.161 5 C -0.022 4.022 6 N -0.344 5.344 7 C 0.285 3.715 8 O -0.471 6.471 9 C -0.158 4.158 10 C -0.100 4.100 11 C -0.154 4.154 12 C -0.165 4.165 13 C -0.155 4.155 14 C -0.151 4.151 15 C 0.006 3.994 16 C -0.109 4.109 17 H 0.065 0.935 18 C 0.033 3.967 19 N -0.391 5.391 20 C -0.376 4.376 21 H 0.097 0.903 22 C -0.273 4.273 23 N -0.623 5.623 24 Si 0.806 3.194 25 H -0.185 1.185 26 H -0.220 1.220 27 H -0.221 1.221 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.130 0.870 33 H 0.105 0.895 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.108 0.892 46 H 0.086 0.914 47 H 0.062 0.938 48 H 0.047 0.953 49 H 0.040 0.960 50 H 0.201 0.799 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.960 -5.077 26.857 27.618 hybrid contribution 0.390 -0.011 -2.136 2.171 sum -3.569 -5.087 24.721 25.490 Atomic orbital electron populations 1.21949 0.94068 1.02053 1.02458 1.21075 0.96883 0.99242 0.92729 0.90413 1.21949 1.00780 0.95136 0.98233 1.22162 1.01727 0.93768 0.84590 1.48324 1.57142 1.21044 1.07862 1.21709 0.76525 0.80626 0.92638 1.90740 1.55462 1.64702 1.36193 1.21919 1.03624 0.97055 0.93216 1.21544 0.97370 0.93603 0.97485 1.22350 0.98776 0.95530 0.98764 1.22533 1.00878 0.96261 0.96824 1.22344 1.00984 0.96580 0.95640 1.22200 1.00265 0.96768 0.95896 1.21285 0.99121 0.92692 0.86261 1.21531 0.99125 0.94409 0.95799 0.93482 1.20877 0.95884 0.94797 0.85182 1.42708 1.56869 1.37459 1.02111 1.19710 1.22342 1.10601 0.84994 0.90274 1.25687 1.00570 0.98983 1.02047 1.69885 1.37301 1.26072 1.29084 0.85010 0.77223 0.77603 0.79541 1.18530 1.21961 1.22116 0.92640 0.89963 0.93630 0.92208 0.86987 0.89495 0.86624 0.86342 0.86000 0.93536 0.91903 0.94869 0.92389 0.91100 0.90748 0.90374 0.91681 0.89199 0.91436 0.93822 0.95319 0.95952 0.79917 0.94148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.11 71.98 0.58 -2.34 16 2 C -0.08 -1.80 2.71 -10.76 -0.03 -1.83 16 3 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.12 -1.93 5.62 30.67 0.17 -1.75 16 5 C 0.10 1.54 5.87 86.36 0.51 2.05 16 6 N -0.61 -16.82 2.97 -818.91 -2.43 -19.25 16 7 C 0.49 15.22 7.48 87.66 0.66 15.88 16 8 O -0.59 -25.65 14.24 -3.03 -0.04 -25.70 16 9 C -0.12 -2.21 3.18 29.85 0.09 -2.12 16 10 C -0.08 -1.76 2.55 -10.07 -0.03 -1.79 16 11 C -0.12 -2.85 5.43 31.67 0.17 -2.68 16 12 C -0.13 -2.37 6.91 31.88 0.22 -2.15 16 13 C -0.12 -1.57 6.83 31.67 0.22 -1.36 16 14 C -0.11 -1.61 6.46 31.32 0.20 -1.41 16 15 C 0.13 4.67 5.05 86.36 0.44 5.11 16 16 C -0.09 -3.02 2.15 -10.71 -0.02 -3.04 16 17 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 18 C 0.16 6.66 5.19 86.38 0.45 7.11 16 19 N -0.75 -41.23 5.38 -343.44 -1.85 -43.08 16 20 C -0.24 -14.49 9.99 84.03 0.84 -13.66 16 21 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 22 C -0.08 -4.95 5.50 84.86 0.47 -4.49 16 23 N -0.97 -64.36 13.06 21.65 0.28 -64.07 16 24 Si 0.98 48.59 29.55 68.60 2.03 50.62 16 25 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 27 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 28 H 0.05 1.12 4.98 -2.39 -0.01 1.11 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 1.06 6.58 -2.38 -0.02 1.05 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.09 1.14 6.69 -2.38 -0.02 1.12 16 34 H 0.12 1.04 5.93 -2.39 -0.01 1.03 16 35 H 0.12 1.55 7.69 -2.39 -0.02 1.53 16 36 H 0.12 1.53 7.81 -2.39 -0.02 1.51 16 37 H 0.05 1.32 7.92 -2.39 -0.02 1.30 16 38 H 0.06 1.45 7.76 -2.39 -0.02 1.43 16 39 H 0.03 1.07 7.66 -2.39 -0.02 1.05 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.09 0.84 7.67 -2.39 -0.02 0.82 16 46 H 0.07 2.34 6.69 -2.39 -0.02 2.33 16 47 H 0.04 2.09 6.22 -2.39 -0.01 2.07 16 48 H 0.03 1.18 6.73 -2.39 -0.02 1.16 16 49 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 50 H 0.37 22.39 6.90 -92.71 -0.64 21.75 16 51 H 0.25 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -80.81 378.47 3.18 -77.63 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.26 Total: 32.32 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 4.94 Total: -8.47 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -4.00 Total: -126.40 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.04 Total: -25.70 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.62 kcal Total: -80.81 3.18 -77.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132606805.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.175 kcal (2) G-P(sol) polarization free energy of solvation -80.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds