Wall clock time and date at job start Fri Apr 10 2020 22:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.45363 * 2 1 4 4 C 1.53038 * 109.43526 * 240.01671 * 2 1 3 5 5 C 1.53196 * 109.33980 * 301.31437 * 4 2 1 6 6 N 1.46926 * 108.77631 * 305.38082 * 5 4 2 7 7 C 1.34773 * 120.63082 * 233.58857 * 6 5 4 8 8 O 1.21613 * 119.99987 * 175.08138 * 7 6 5 9 9 C 1.47101 * 119.99874 * 355.07633 * 7 6 5 10 10 C 1.33000 * 120.00221 * 186.69206 * 9 7 6 11 11 C 1.50702 * 119.99695 * 8.97211 * 10 9 7 12 12 C 1.53003 * 109.47113 * 48.61966 * 11 10 9 13 13 C 1.52996 * 109.47031 * 168.61756 * 11 10 9 14 14 C 1.53000 * 109.47304 * 288.61972 * 11 10 9 15 15 C 1.46923 * 118.73937 * 53.60399 * 6 5 4 16 16 C 1.53038 * 109.45896 * 119.96627 * 2 1 3 17 17 H 1.08998 * 109.49833 * 178.63711 * 16 2 1 18 18 C 1.52999 * 109.49812 * 298.70071 * 16 2 1 19 19 N 1.46499 * 109.47323 * 184.93352 * 18 16 2 20 20 C 1.36943 * 120.00124 * 179.97438 * 19 18 16 21 21 H 1.07996 * 119.99548 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99995 * 180.02562 * 20 19 18 23 23 N 1.31617 * 119.99822 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99935 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47152 * 270.00182 * 24 22 20 26 26 H 1.48496 * 109.47270 * 30.00188 * 24 22 20 27 27 H 1.48497 * 109.47001 * 150.00692 * 24 22 20 28 28 H 1.09004 * 109.47236 * 300.03763 * 1 2 3 29 29 H 1.08998 * 109.47391 * 60.03331 * 1 2 3 30 30 H 1.09001 * 109.47754 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47426 * 181.36640 * 4 2 1 32 32 H 1.09003 * 109.49577 * 61.28098 * 4 2 1 33 33 H 1.08993 * 109.58821 * 185.58720 * 5 4 2 34 34 H 1.09001 * 109.69980 * 65.23385 * 5 4 2 35 35 H 1.08003 * 119.99884 * 6.69800 * 9 7 6 36 36 H 1.07995 * 119.99866 * 188.96912 * 10 9 7 37 37 H 1.08995 * 109.47035 * 95.14445 * 12 11 10 38 38 H 1.08998 * 109.47252 * 215.14547 * 12 11 10 39 39 H 1.09004 * 109.46919 * 335.13963 * 12 11 10 40 40 H 1.09004 * 109.47118 * 59.99821 * 13 11 10 41 41 H 1.09005 * 109.47083 * 179.97438 * 13 11 10 42 42 H 1.09001 * 109.47223 * 300.00345 * 13 11 10 43 43 H 1.09007 * 109.46831 * 29.03825 * 14 11 10 44 44 H 1.08994 * 109.47360 * 149.03844 * 14 11 10 45 45 H 1.09000 * 109.46715 * 269.04570 * 14 11 10 46 46 H 1.08997 * 109.58977 * 186.60835 * 15 6 5 47 47 H 1.09009 * 109.58663 * 66.17950 * 15 6 5 48 48 H 1.09005 * 109.47152 * 64.93551 * 18 16 2 49 49 H 1.08998 * 109.47396 * 304.93741 * 18 16 2 50 50 H 0.96999 * 119.99964 * 0.02562 * 19 18 16 51 51 H 0.96998 * 119.99826 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0391 -0.7212 -1.2500 5 6 1.4995 -2.1549 -1.2638 6 7 1.8630 -2.8092 0.0005 7 6 2.5167 -3.9878 0.0006 8 8 2.8909 -4.4755 1.0499 9 6 2.7773 -4.6844 -1.2686 10 6 3.3018 -5.9066 -1.2609 11 6 3.4417 -6.6583 0.0377 12 6 2.1199 -6.5995 0.8061 13 6 3.7979 -8.1174 -0.2535 14 6 4.5494 -6.0211 0.8791 15 6 1.5001 -2.1544 1.2647 16 6 2.0397 -0.7207 1.2501 17 1 3.1295 -0.7423 1.2386 18 6 1.5568 0.0194 2.4990 19 7 2.1410 -0.6008 3.6907 20 6 1.8502 -0.1042 4.9334 21 1 1.1899 0.7443 5.0348 22 6 2.4041 -0.6916 6.0626 23 7 2.1242 -0.2146 7.2569 24 14 3.5457 -2.1597 5.8870 25 1 2.7504 -3.4131 5.9295 26 1 4.2663 -2.0744 4.5914 27 1 4.5280 -2.1589 7.0007 28 1 -0.3634 0.5144 0.8897 29 1 -0.3634 0.5133 -0.8902 30 1 -0.3634 -1.0276 0.0005 31 1 3.1288 -0.7429 -1.2385 32 1 1.6946 -0.1942 -2.1398 33 1 1.9381 -2.7024 -2.0980 34 1 0.4146 -2.1382 -1.3678 35 1 2.5428 -4.2033 -2.2067 36 1 3.6273 -6.3603 -2.1853 37 1 1.5354 -7.4943 0.5924 38 1 2.3234 -6.5451 1.8755 39 1 1.5594 -5.7170 0.4976 40 1 4.7395 -8.1594 -0.8009 41 1 3.8996 -8.6611 0.6859 42 1 3.0087 -8.5714 -0.8529 43 1 4.6189 -4.9589 0.6438 44 1 4.3187 -6.1445 1.9371 45 1 5.4998 -6.5056 0.6554 46 1 1.9392 -2.7016 2.0989 47 1 0.4151 -2.1354 1.3681 48 1 0.4697 -0.0358 2.5565 49 1 1.8651 1.0635 2.4446 50 1 2.7344 -1.3626 3.5996 51 1 2.5110 -0.6253 8.0460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132724889.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:34 Heat of formation + Delta-G solvation = 15.805984 kcal Electronic energy + Delta-G solvation = -27534.923550 eV Core-core repulsion = 24050.011075 eV Total energy + Delta-G solvation = -3484.912476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.83445 -39.05783 -36.54018 -35.07457 -33.59367 -32.02221 -31.61978 -30.19229 -27.78002 -27.22299 -27.11040 -26.12924 -24.88596 -23.07804 -22.65499 -21.10318 -20.22803 -18.75377 -17.73439 -17.41403 -17.23935 -15.84234 -15.55240 -15.23226 -14.98260 -14.58559 -14.29935 -14.09780 -13.98254 -13.81964 -13.61285 -13.45518 -13.11919 -12.73056 -12.66772 -12.50087 -12.24471 -11.86652 -11.82211 -11.70509 -11.50952 -11.24231 -11.13492 -11.03238 -10.87752 -10.83286 -10.75090 -10.58726 -10.47220 -10.30775 -10.11255 -9.97851 -9.52241 -9.46172 -9.21783 -8.83137 -8.32221 -7.16781 -5.71597 -3.06710 1.30084 3.09493 3.31317 3.46544 3.51768 3.54509 4.45568 4.50116 4.66463 4.67396 4.78481 4.83294 4.88824 5.05026 5.11658 5.19215 5.22283 5.31476 5.40624 5.48358 5.56087 5.60471 5.61118 5.65389 5.69168 5.71550 5.79147 5.82385 5.87236 5.92406 5.93487 5.95243 6.02321 6.10830 6.18934 6.22038 6.26523 6.27849 6.30606 6.40330 6.48111 6.54956 6.60466 6.68350 6.75006 6.82270 7.53538 8.04571 8.32706 8.47559 9.27107 10.00022 10.19510 11.46745 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.011028 B = 0.005270 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.415817 B = 5311.471705 C = 7457.239848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 H 0.074 0.926 4 C -0.129 4.129 5 C 0.105 3.895 6 N -0.608 5.608 7 C 0.530 3.470 8 O -0.514 6.514 9 C -0.226 4.226 10 C -0.050 4.050 11 C -0.041 4.041 12 C -0.120 4.120 13 C -0.141 4.141 14 C -0.115 4.115 15 C 0.120 3.880 16 C -0.106 4.106 17 H 0.072 0.928 18 C 0.165 3.835 19 N -0.757 5.757 20 C -0.244 4.244 21 H 0.090 0.910 22 C 0.006 3.994 23 N -0.935 5.935 24 Si 0.882 3.118 25 H -0.283 1.283 26 H -0.276 1.276 27 H -0.292 1.292 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.031 0.969 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.030 0.970 46 H 0.095 0.905 47 H 0.070 0.930 48 H 0.031 0.969 49 H 0.028 0.972 50 H 0.362 0.638 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.210 -9.397 -24.553 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.103 4.103 3 H 0.092 0.908 4 C -0.167 4.167 5 C -0.018 4.018 6 N -0.341 5.341 7 C 0.322 3.678 8 O -0.393 6.393 9 C -0.247 4.247 10 C -0.070 4.070 11 C -0.041 4.041 12 C -0.177 4.177 13 C -0.198 4.198 14 C -0.172 4.172 15 C -0.002 4.002 16 C -0.126 4.126 17 H 0.090 0.910 18 C 0.037 3.963 19 N -0.403 5.403 20 C -0.374 4.374 21 H 0.107 0.893 22 C -0.190 4.190 23 N -0.583 5.583 24 Si 0.712 3.288 25 H -0.209 1.209 26 H -0.202 1.202 27 H -0.218 1.218 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.050 0.950 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.048 0.952 46 H 0.113 0.887 47 H 0.088 0.912 48 H 0.049 0.951 49 H 0.046 0.954 50 H 0.195 0.805 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.124 -9.506 -23.797 25.626 hybrid contribution 0.833 -0.853 -0.169 1.204 sum 0.709 -10.359 -23.966 26.119 Atomic orbital electron populations 1.21991 0.95113 1.02004 1.01934 1.21050 0.96101 0.99379 0.93750 0.90757 1.21949 1.01110 0.95223 0.98460 1.21803 1.00273 0.93556 0.86145 1.48090 1.57262 1.21343 1.07419 1.18481 0.78459 0.80846 0.90010 1.90964 1.49077 1.65118 1.34098 1.22684 1.06995 0.97583 0.97435 1.23888 0.90421 0.93854 0.98793 1.19700 0.97796 0.93851 0.92751 1.22178 0.94782 0.99991 1.00759 1.22010 1.00795 0.95492 1.01550 1.21965 0.94344 1.01318 0.99527 1.21696 0.99930 0.92803 0.85788 1.21734 1.00791 0.94645 0.95407 0.90976 1.20663 0.96331 0.94916 0.84385 1.42780 1.57352 1.37563 1.02563 1.19045 1.24121 1.12303 0.81882 0.89253 1.24642 1.00171 0.99047 0.95103 1.69704 1.48409 1.43194 0.97008 0.86584 0.81366 0.83900 0.76939 1.20925 1.20249 1.21825 0.91677 0.93082 0.92438 0.91601 0.90874 0.90024 0.91231 0.85481 0.86011 0.95011 0.91863 0.92027 0.92853 0.92332 0.92900 0.91012 0.92203 0.95157 0.88655 0.91197 0.95114 0.95409 0.80508 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.11 37.15 0.30 -1.34 16 2 C -0.08 -0.97 2.71 -90.58 -0.25 -1.21 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.13 -1.20 5.62 -26.61 -0.15 -1.35 16 5 C 0.11 0.97 5.84 -3.71 -0.02 0.95 16 6 N -0.61 -7.83 2.97 -174.16 -0.52 -8.34 16 7 C 0.53 7.30 5.65 -12.67 -0.07 7.23 16 8 O -0.51 -8.63 8.05 5.27 0.04 -8.59 16 9 C -0.23 -2.33 8.79 -37.80 -0.33 -2.67 16 10 C -0.05 -0.49 8.52 -36.12 -0.31 -0.80 16 11 C -0.04 -0.47 0.75 -155.66 -0.12 -0.59 16 12 C -0.12 -1.59 7.58 37.16 0.28 -1.31 16 13 C -0.14 -1.31 8.04 37.16 0.30 -1.01 16 14 C -0.11 -1.55 7.54 37.16 0.28 -1.27 16 15 C 0.12 1.86 5.06 -3.71 -0.02 1.84 16 16 C -0.11 -1.63 2.15 -90.50 -0.19 -1.83 16 17 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 18 C 0.16 3.17 5.19 -4.04 -0.02 3.15 16 19 N -0.76 -18.52 5.18 -59.91 -0.31 -18.83 16 20 C -0.24 -7.08 10.47 -15.06 -0.16 -7.24 16 21 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 22 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 23 N -0.94 -30.11 13.97 55.49 0.78 -29.33 16 24 Si 0.88 23.42 27.74 -169.99 -4.71 18.70 16 25 H -0.28 -7.52 7.11 56.52 0.40 -7.12 16 26 H -0.28 -7.09 6.52 56.52 0.37 -6.72 16 27 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 28 H 0.06 0.78 6.58 -51.93 -0.34 0.44 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.62 4.98 -51.93 -0.26 0.36 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.59 5.37 -51.93 -0.28 0.31 16 34 H 0.07 0.59 6.71 -51.93 -0.35 0.24 16 35 H 0.13 0.96 5.91 -52.48 -0.31 0.65 16 36 H 0.12 0.86 8.00 -52.49 -0.42 0.44 16 37 H 0.03 0.37 7.75 -51.93 -0.40 -0.03 16 38 H 0.06 0.96 6.98 -51.93 -0.36 0.60 16 39 H 0.06 0.88 4.63 -51.93 -0.24 0.64 16 40 H 0.05 0.44 8.11 -51.93 -0.42 0.02 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.43 8.12 -51.93 -0.42 0.01 16 43 H 0.07 1.10 5.50 -51.93 -0.29 0.81 16 44 H 0.06 0.91 7.18 -51.93 -0.37 0.54 16 45 H 0.03 0.36 7.80 -51.93 -0.41 -0.05 16 46 H 0.10 1.82 6.20 -51.93 -0.32 1.50 16 47 H 0.07 1.06 6.70 -51.92 -0.35 0.71 16 48 H 0.03 0.59 6.73 -51.93 -0.35 0.24 16 49 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.36 8.91 4.76 -40.82 -0.19 8.71 16 51 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 367.52 15.07 5.54 5.54 Total: -1.00 -33.09 367.52 -8.39 -41.48 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -8.63 Total: 6.72 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -0.57 Total: -7.36 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.05 Total: -56.50 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.04 Total: -8.59 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -4.71 Total: 18.70 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.09 -8.39 -41.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132724889.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.290 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds