Wall clock time and date at job start Fri Apr 10 2020 22:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.45363 * 2 1 4 4 C 1.53038 * 109.43526 * 240.01671 * 2 1 3 5 5 C 1.53196 * 109.33980 * 301.31437 * 4 2 1 6 6 N 1.46926 * 108.77631 * 305.38082 * 5 4 2 7 7 C 1.34773 * 120.63082 * 233.58857 * 6 5 4 8 8 O 1.21613 * 119.99987 * 175.08138 * 7 6 5 9 9 C 1.47101 * 119.99874 * 355.07633 * 7 6 5 10 10 C 1.33000 * 120.00221 * 186.69206 * 9 7 6 11 11 C 1.50702 * 119.99695 * 8.97211 * 10 9 7 12 12 C 1.53003 * 109.47113 * 48.61966 * 11 10 9 13 13 C 1.52996 * 109.47031 * 168.61756 * 11 10 9 14 14 C 1.53000 * 109.47304 * 288.61972 * 11 10 9 15 15 C 1.46923 * 118.73937 * 53.60399 * 6 5 4 16 16 C 1.53038 * 109.45896 * 119.96627 * 2 1 3 17 17 H 1.08998 * 109.49833 * 178.63711 * 16 2 1 18 18 C 1.52999 * 109.49812 * 298.70071 * 16 2 1 19 19 N 1.46499 * 109.47323 * 184.93352 * 18 16 2 20 20 C 1.36943 * 120.00124 * 179.97438 * 19 18 16 21 21 H 1.07996 * 119.99548 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99995 * 180.02562 * 20 19 18 23 23 N 1.31617 * 119.99822 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99935 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47152 * 270.00182 * 24 22 20 26 26 H 1.48496 * 109.47270 * 30.00188 * 24 22 20 27 27 H 1.48497 * 109.47001 * 150.00692 * 24 22 20 28 28 H 1.09004 * 109.47236 * 300.03763 * 1 2 3 29 29 H 1.08998 * 109.47391 * 60.03331 * 1 2 3 30 30 H 1.09001 * 109.47754 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47426 * 181.36640 * 4 2 1 32 32 H 1.09003 * 109.49577 * 61.28098 * 4 2 1 33 33 H 1.08993 * 109.58821 * 185.58720 * 5 4 2 34 34 H 1.09001 * 109.69980 * 65.23385 * 5 4 2 35 35 H 1.08003 * 119.99884 * 6.69800 * 9 7 6 36 36 H 1.07995 * 119.99866 * 188.96912 * 10 9 7 37 37 H 1.08995 * 109.47035 * 95.14445 * 12 11 10 38 38 H 1.08998 * 109.47252 * 215.14547 * 12 11 10 39 39 H 1.09004 * 109.46919 * 335.13963 * 12 11 10 40 40 H 1.09004 * 109.47118 * 59.99821 * 13 11 10 41 41 H 1.09005 * 109.47083 * 179.97438 * 13 11 10 42 42 H 1.09001 * 109.47223 * 300.00345 * 13 11 10 43 43 H 1.09007 * 109.46831 * 29.03825 * 14 11 10 44 44 H 1.08994 * 109.47360 * 149.03844 * 14 11 10 45 45 H 1.09000 * 109.46715 * 269.04570 * 14 11 10 46 46 H 1.08997 * 109.58977 * 186.60835 * 15 6 5 47 47 H 1.09009 * 109.58663 * 66.17950 * 15 6 5 48 48 H 1.09005 * 109.47152 * 64.93551 * 18 16 2 49 49 H 1.08998 * 109.47396 * 304.93741 * 18 16 2 50 50 H 0.96999 * 119.99964 * 0.02562 * 19 18 16 51 51 H 0.96998 * 119.99826 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0391 -0.7212 -1.2500 5 6 1.4995 -2.1549 -1.2638 6 7 1.8630 -2.8092 0.0005 7 6 2.5167 -3.9878 0.0006 8 8 2.8909 -4.4755 1.0499 9 6 2.7773 -4.6844 -1.2686 10 6 3.3018 -5.9066 -1.2609 11 6 3.4417 -6.6583 0.0377 12 6 2.1199 -6.5995 0.8061 13 6 3.7979 -8.1174 -0.2535 14 6 4.5494 -6.0211 0.8791 15 6 1.5001 -2.1544 1.2647 16 6 2.0397 -0.7207 1.2501 17 1 3.1295 -0.7423 1.2386 18 6 1.5568 0.0194 2.4990 19 7 2.1410 -0.6008 3.6907 20 6 1.8502 -0.1042 4.9334 21 1 1.1899 0.7443 5.0348 22 6 2.4041 -0.6916 6.0626 23 7 2.1242 -0.2146 7.2569 24 14 3.5457 -2.1597 5.8870 25 1 2.7504 -3.4131 5.9295 26 1 4.2663 -2.0744 4.5914 27 1 4.5280 -2.1589 7.0007 28 1 -0.3634 0.5144 0.8897 29 1 -0.3634 0.5133 -0.8902 30 1 -0.3634 -1.0276 0.0005 31 1 3.1288 -0.7429 -1.2385 32 1 1.6946 -0.1942 -2.1398 33 1 1.9381 -2.7024 -2.0980 34 1 0.4146 -2.1382 -1.3678 35 1 2.5428 -4.2033 -2.2067 36 1 3.6273 -6.3603 -2.1853 37 1 1.5354 -7.4943 0.5924 38 1 2.3234 -6.5451 1.8755 39 1 1.5594 -5.7170 0.4976 40 1 4.7395 -8.1594 -0.8009 41 1 3.8996 -8.6611 0.6859 42 1 3.0087 -8.5714 -0.8529 43 1 4.6189 -4.9589 0.6438 44 1 4.3187 -6.1445 1.9371 45 1 5.4998 -6.5056 0.6554 46 1 1.9392 -2.7016 2.0989 47 1 0.4151 -2.1354 1.3681 48 1 0.4697 -0.0358 2.5565 49 1 1.8651 1.0635 2.4446 50 1 2.7344 -1.3626 3.5996 51 1 2.5110 -0.6253 8.0460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132724889.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:33 Heat of formation + Delta-G solvation = -4.697879 kcal Electronic energy + Delta-G solvation = -27535.812665 eV Core-core repulsion = 24050.011075 eV Total energy + Delta-G solvation = -3485.801590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.83555 -40.09941 -37.57458 -36.70296 -34.89489 -33.66291 -32.66999 -31.70321 -28.77555 -28.19829 -28.06542 -27.61035 -25.93124 -24.63398 -23.72523 -22.56201 -21.27158 -20.10794 -19.24889 -18.63949 -18.17467 -16.88815 -16.81157 -16.60007 -16.21968 -15.96708 -15.55621 -15.19410 -15.16296 -14.90194 -14.78222 -14.65599 -14.39433 -14.29483 -13.87078 -13.71753 -13.36047 -13.09679 -13.03996 -12.82846 -12.73057 -12.64722 -12.40969 -12.20966 -12.16306 -12.00634 -11.90280 -11.83508 -11.77196 -11.53889 -11.47412 -11.31790 -11.22372 -11.01549 -10.34607 -10.20108 -9.36515 -9.31733 -8.09618 -5.40987 0.48396 1.29140 1.32634 1.37604 2.11931 2.37165 2.39544 3.22570 3.49192 3.63119 3.73850 3.81984 3.85656 3.95357 4.07467 4.13009 4.18755 4.27828 4.37574 4.44090 4.51837 4.53981 4.63890 4.74588 4.76763 4.78020 4.80663 4.82256 4.89743 4.90982 4.96912 5.00320 5.07340 5.16981 5.17911 5.21566 5.21902 5.25399 5.30676 5.35268 5.40717 5.48104 5.52950 5.59006 5.61156 5.70841 5.76784 6.15763 6.58734 7.01610 7.33672 7.79368 7.96183 9.12117 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.011028 B = 0.005270 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.415817 B = 5311.471705 C = 7457.239848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 H 0.077 0.923 4 C -0.122 4.122 5 C 0.100 3.900 6 N -0.608 5.608 7 C 0.517 3.483 8 O -0.557 6.557 9 C -0.227 4.227 10 C -0.043 4.043 11 C -0.045 4.045 12 C -0.114 4.114 13 C -0.136 4.136 14 C -0.108 4.108 15 C 0.127 3.873 16 C -0.094 4.094 17 H 0.054 0.946 18 C 0.161 3.839 19 N -0.761 5.761 20 C -0.231 4.231 21 H 0.064 0.936 22 C -0.054 4.054 23 N -0.979 5.979 24 Si 0.945 3.055 25 H -0.285 1.285 26 H -0.267 1.267 27 H -0.289 1.289 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.045 0.955 38 H 0.028 0.972 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.027 0.973 45 H 0.045 0.955 46 H 0.051 0.949 47 H 0.071 0.929 48 H 0.034 0.966 49 H 0.027 0.973 50 H 0.361 0.639 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.015 -10.498 -29.385 31.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.095 0.905 4 C -0.160 4.160 5 C -0.022 4.022 6 N -0.340 5.340 7 C 0.310 3.690 8 O -0.438 6.438 9 C -0.247 4.247 10 C -0.062 4.062 11 C -0.045 4.045 12 C -0.171 4.171 13 C -0.194 4.194 14 C -0.165 4.165 15 C 0.004 3.996 16 C -0.113 4.113 17 H 0.073 0.927 18 C 0.035 3.965 19 N -0.407 5.407 20 C -0.362 4.362 21 H 0.082 0.918 22 C -0.246 4.246 23 N -0.630 5.630 24 Si 0.774 3.226 25 H -0.212 1.212 26 H -0.192 1.192 27 H -0.215 1.215 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.182 0.818 36 H 0.180 0.820 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.047 0.953 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.052 0.948 49 H 0.045 0.955 50 H 0.194 0.806 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.089 -10.588 -28.704 30.595 hybrid contribution 0.684 -0.431 1.351 1.574 sum 0.773 -11.019 -27.354 29.500 Atomic orbital electron populations 1.21956 0.94178 1.02135 1.02380 1.21055 0.96793 0.99273 0.92788 0.90476 1.21934 1.00710 0.95202 0.98154 1.22141 1.01496 0.93539 0.84983 1.48167 1.56957 1.21307 1.07611 1.19263 0.77804 0.80957 0.90997 1.90967 1.50782 1.66127 1.35922 1.22816 1.07395 0.97793 0.96736 1.24138 0.89539 0.93534 0.99015 1.19702 0.95715 0.95702 0.93359 1.22088 0.96131 0.99939 0.98978 1.21970 1.02227 0.93515 1.01638 1.21861 0.96058 1.00457 0.98164 1.21342 0.99451 0.92432 0.86366 1.21592 0.99586 0.94675 0.95479 0.92734 1.20871 0.96241 0.95023 0.84355 1.42874 1.57507 1.37633 1.02676 1.19089 1.22399 1.10894 0.83777 0.91781 1.25306 1.02373 1.01996 0.94891 1.69843 1.50287 1.45041 0.97782 0.85566 0.79489 0.80387 0.77179 1.21194 1.19221 1.21535 0.93652 0.90245 0.92435 0.92250 0.87385 0.86964 0.89781 0.81781 0.81985 0.93614 0.95244 0.93296 0.91163 0.93283 0.91237 0.93020 0.95349 0.93645 0.93006 0.91132 0.94773 0.95514 0.80614 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.11 71.98 0.58 -2.24 16 2 C -0.08 -1.67 2.71 -10.77 -0.03 -1.70 16 3 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.12 -1.78 5.62 30.67 0.17 -1.61 16 5 C 0.10 1.44 5.84 86.36 0.50 1.95 16 6 N -0.61 -14.84 2.97 -823.18 -2.45 -17.29 16 7 C 0.52 13.76 5.65 86.57 0.49 14.25 16 8 O -0.56 -19.42 8.05 -4.07 -0.03 -19.45 16 9 C -0.23 -3.91 8.79 23.43 0.21 -3.71 16 10 C -0.04 -0.69 8.52 24.52 0.21 -0.48 16 11 C -0.04 -0.97 0.75 -52.93 -0.04 -1.01 16 12 C -0.11 -3.05 7.58 71.98 0.55 -2.51 16 13 C -0.14 -2.17 8.04 71.98 0.58 -1.59 16 14 C -0.11 -2.97 7.54 71.98 0.54 -2.43 16 15 C 0.13 4.02 5.06 86.36 0.44 4.46 16 16 C -0.09 -2.87 2.15 -10.72 -0.02 -2.89 16 17 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 18 C 0.16 6.34 5.19 86.38 0.45 6.79 16 19 N -0.76 -38.38 5.18 -343.45 -1.78 -40.16 16 20 C -0.23 -13.86 10.47 84.03 0.88 -12.98 16 21 H 0.06 4.12 8.06 -2.91 -0.02 4.09 16 22 C -0.05 -3.35 5.50 84.86 0.47 -2.88 16 23 N -0.98 -65.04 13.97 21.65 0.30 -64.74 16 24 Si 0.95 50.30 27.74 68.60 1.90 52.20 16 25 H -0.29 -15.19 7.11 99.48 0.71 -14.49 16 26 H -0.27 -13.58 6.52 99.48 0.65 -12.93 16 27 H -0.29 -15.17 7.11 99.48 0.71 -14.46 16 28 H 0.04 1.03 6.58 -2.38 -0.02 1.02 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.09 4.98 -2.39 -0.01 1.08 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.11 0.98 5.37 -2.39 -0.01 0.97 16 34 H 0.08 1.04 6.71 -2.39 -0.02 1.02 16 35 H 0.16 1.53 5.91 -2.91 -0.02 1.51 16 36 H 0.16 1.34 8.00 -2.91 -0.02 1.32 16 37 H 0.05 1.04 7.75 -2.39 -0.02 1.02 16 38 H 0.03 0.95 6.98 -2.39 -0.02 0.93 16 39 H 0.05 1.40 4.63 -2.39 -0.01 1.39 16 40 H 0.07 0.90 8.11 -2.39 -0.02 0.88 16 41 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.07 0.89 8.12 -2.39 -0.02 0.87 16 43 H 0.05 1.62 5.50 -2.38 -0.01 1.60 16 44 H 0.03 0.92 7.18 -2.39 -0.02 0.90 16 45 H 0.04 1.05 7.80 -2.39 -0.02 1.03 16 46 H 0.05 2.09 6.20 -2.39 -0.01 2.08 16 47 H 0.07 2.17 6.70 -2.38 -0.02 2.16 16 48 H 0.03 1.34 6.73 -2.38 -0.02 1.32 16 49 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.36 18.31 4.76 -92.71 -0.44 17.87 16 51 H 0.26 16.38 8.31 -92.71 -0.77 15.61 16 Total: -1.00 -77.29 367.52 4.33 -72.96 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.41 Total: 25.05 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: 5.97 Total: -8.58 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -3.92 Total: -122.18 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.03 Total: -19.45 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 1.90 Total: 52.20 kcal Total: -77.29 4.33 -72.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132724889.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.261 kcal (2) G-P(sol) polarization free energy of solvation -77.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds