Wall clock time and date at job start Fri Apr 10 2020 22:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.46223 * 2 1 4 4 C 1.53041 * 109.44535 * 240.03361 * 2 1 3 5 5 C 1.52760 * 109.38349 * 301.22425 * 4 2 1 6 6 N 1.46926 * 109.01195 * 305.58895 * 5 4 2 7 7 C 1.34778 * 120.63390 * 233.58424 * 6 5 4 8 8 O 1.21612 * 120.00062 * 184.80281 * 7 6 5 9 9 C 1.47102 * 119.99783 * 4.52506 * 7 6 5 10 10 C 1.32994 * 120.00192 * 174.98006 * 9 7 6 11 11 C 1.50697 * 120.00300 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47001 * 359.97438 * 11 10 9 13 13 C 1.52993 * 109.47333 * 120.00335 * 11 10 9 14 14 C 1.53008 * 109.46797 * 240.00158 * 11 10 9 15 15 C 1.46933 * 118.73640 * 53.30842 * 6 5 4 16 16 C 1.53045 * 109.46173 * 119.97520 * 2 1 3 17 17 H 1.08998 * 109.49655 * 178.59443 * 16 2 1 18 18 C 1.53002 * 109.52000 * 298.67066 * 16 2 1 19 19 N 1.46501 * 109.46955 * 184.85042 * 18 16 2 20 20 C 1.36933 * 120.00017 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00474 * 0.02562 * 20 19 18 22 22 C 1.38812 * 120.00022 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00126 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00177 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47124 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47044 * 119.99996 * 24 22 20 27 27 H 1.48495 * 109.47562 * 240.00226 * 24 22 20 28 28 H 1.09009 * 109.47039 * 300.02558 * 1 2 3 29 29 H 1.08998 * 109.47481 * 60.02513 * 1 2 3 30 30 H 1.09006 * 109.47613 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.50028 * 61.30664 * 4 2 1 32 32 H 1.09004 * 109.49698 * 181.37363 * 4 2 1 33 33 H 1.09005 * 109.51256 * 185.70744 * 5 4 2 34 34 H 1.09001 * 109.43453 * 65.43095 * 5 4 2 35 35 H 1.08004 * 119.99931 * 354.98756 * 9 7 6 36 36 H 1.08004 * 119.99367 * 0.02562 * 10 9 7 37 37 H 1.09000 * 109.47506 * 60.00560 * 12 11 10 38 38 H 1.09000 * 109.47014 * 179.97438 * 12 11 10 39 39 H 1.08999 * 109.47588 * 300.00374 * 12 11 10 40 40 H 1.08994 * 109.47420 * 59.99627 * 13 11 10 41 41 H 1.09000 * 109.47346 * 180.02562 * 13 11 10 42 42 H 1.09003 * 109.46701 * 300.00024 * 13 11 10 43 43 H 1.08999 * 109.46971 * 60.00129 * 14 11 10 44 44 H 1.09000 * 109.46772 * 179.97438 * 14 11 10 45 45 H 1.08994 * 109.46976 * 299.99772 * 14 11 10 46 46 H 1.09000 * 109.58221 * 66.43240 * 15 6 5 47 47 H 1.08998 * 109.58445 * 186.85602 * 15 6 5 48 48 H 1.08999 * 109.47197 * 304.85582 * 18 16 2 49 49 H 1.09010 * 109.47137 * 64.85708 * 18 16 2 50 50 H 0.97005 * 120.00172 * 0.02562 * 19 18 16 51 51 H 0.97000 * 119.99833 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0394 -0.7208 -1.2502 5 6 1.5038 -2.1514 -1.2643 6 7 1.8619 -2.8090 -0.0001 7 6 2.5155 -3.9877 -0.0002 8 8 2.7292 -4.5646 1.0488 9 6 2.9652 -4.5792 -1.2698 10 6 3.6963 -5.6901 -1.2638 11 6 4.1574 -6.2958 -2.5644 12 6 3.6521 -5.4445 -3.7309 13 6 5.6864 -6.3428 -2.5914 14 6 3.6012 -7.7156 -2.6913 15 6 1.4992 -2.1542 1.2642 16 6 2.0399 -0.7210 1.2500 17 1 3.1296 -0.7432 1.2381 18 6 1.5579 0.0191 2.4994 19 7 2.1409 -0.6030 3.6907 20 6 1.8507 -0.1071 4.9337 21 1 1.1916 0.7425 5.0358 22 6 2.4035 -0.6962 6.0625 23 7 3.2070 -1.7312 5.9381 24 14 2.0082 -0.0192 7.7580 25 1 1.0880 1.1390 7.6264 26 1 1.3590 -1.0764 8.5741 27 1 3.2628 0.4178 8.4215 28 1 -0.3633 0.5143 0.8898 29 1 -0.3634 0.5134 -0.8902 30 1 -0.3634 -1.0277 0.0005 31 1 1.6954 -0.1935 -2.1398 32 1 3.1292 -0.7427 -1.2388 33 1 1.9455 -2.6973 -2.0980 34 1 0.4193 -2.1315 -1.3715 35 1 2.7016 -4.1112 -2.2069 36 1 3.9595 -6.1582 -0.3267 37 1 4.0479 -4.4329 -3.6408 38 1 3.9860 -5.8824 -4.6716 39 1 2.5628 -5.4114 -3.7115 40 1 6.0460 -6.9494 -1.7604 41 1 6.0199 -6.7804 -3.5323 42 1 6.0826 -5.3313 -2.5009 43 1 2.5119 -7.6821 -2.6720 44 1 3.9344 -8.1535 -3.6322 45 1 3.9609 -8.3222 -1.8602 46 1 0.4143 -2.1346 1.3674 47 1 1.9379 -2.7020 2.0983 48 1 1.8678 1.0627 2.4458 49 1 0.4706 -0.0346 2.5567 50 1 2.7331 -1.3658 3.5991 51 1 3.5936 -2.1426 6.7269 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132724891.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:36 Heat of formation + Delta-G solvation = -45.967001 kcal Electronic energy + Delta-G solvation = -26469.632311 eV Core-core repulsion = 22982.041158 eV Total energy + Delta-G solvation = -3487.591153 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.51634 -39.56625 -38.47604 -36.65365 -34.89653 -33.52528 -32.63323 -31.39050 -28.73396 -28.18411 -28.10041 -27.49679 -26.03558 -24.92939 -23.90082 -22.58356 -20.82007 -19.49439 -19.17220 -18.89752 -18.29802 -17.08497 -16.79770 -16.29653 -16.21044 -15.77199 -15.69984 -15.42350 -15.14341 -15.02632 -14.79676 -14.53240 -14.33903 -14.10122 -13.79714 -13.38949 -13.17549 -13.07175 -12.90028 -12.88695 -12.68903 -12.64362 -12.53330 -12.45231 -12.12085 -12.02335 -11.92656 -11.92264 -11.89986 -11.73235 -11.60023 -11.37888 -11.22531 -10.96086 -10.75147 -10.44588 -9.54403 -9.02877 -7.96456 -5.27253 0.38713 1.43249 1.45775 1.55859 2.00752 2.29592 2.53581 3.36458 3.45270 3.67463 3.76857 3.85326 3.86070 3.97266 4.09011 4.09680 4.14014 4.27005 4.31395 4.39279 4.46025 4.55289 4.58458 4.72476 4.77294 4.78703 4.79479 4.83218 4.91960 4.92007 4.97524 5.03203 5.04726 5.09717 5.14512 5.18276 5.22296 5.24476 5.29400 5.31917 5.40236 5.42963 5.43882 5.47466 5.56486 5.58394 5.62336 6.24050 6.47557 7.18748 7.29089 8.05628 8.27919 9.27365 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.015283 B = 0.003277 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.640931 B = 8541.357657 C = 9952.098829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 H 0.081 0.919 4 C -0.123 4.123 5 C 0.097 3.903 6 N -0.603 5.603 7 C 0.526 3.474 8 O -0.605 6.605 9 C -0.221 4.221 10 C -0.052 4.052 11 C -0.044 4.044 12 C -0.147 4.147 13 C -0.139 4.139 14 C -0.138 4.138 15 C 0.129 3.871 16 C -0.089 4.089 17 H 0.048 0.952 18 C 0.160 3.840 19 N -0.749 5.749 20 C -0.244 4.244 21 H 0.080 0.920 22 C -0.082 4.082 23 N -0.973 5.973 24 Si 0.978 3.022 25 H -0.261 1.261 26 H -0.294 1.294 27 H -0.292 1.292 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.115 0.885 32 H 0.059 0.941 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.171 0.829 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.050 0.950 46 H 0.070 0.930 47 H 0.044 0.956 48 H 0.025 0.975 49 H 0.030 0.970 50 H 0.369 0.631 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.182 -4.191 -28.928 29.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.099 0.901 4 C -0.161 4.161 5 C -0.024 4.024 6 N -0.334 5.334 7 C 0.319 3.681 8 O -0.488 6.488 9 C -0.240 4.240 10 C -0.072 4.072 11 C -0.045 4.045 12 C -0.204 4.204 13 C -0.197 4.197 14 C -0.195 4.195 15 C 0.006 3.994 16 C -0.109 4.109 17 H 0.066 0.934 18 C 0.033 3.967 19 N -0.392 5.392 20 C -0.376 4.376 21 H 0.098 0.902 22 C -0.274 4.274 23 N -0.624 5.624 24 Si 0.807 3.193 25 H -0.185 1.185 26 H -0.222 1.222 27 H -0.219 1.219 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.133 0.867 32 H 0.078 0.922 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.188 0.812 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.062 0.938 48 H 0.043 0.957 49 H 0.048 0.952 50 H 0.200 0.800 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.202 -4.322 -28.299 28.712 hybrid contribution 0.355 -0.166 2.075 2.111 sum -1.847 -4.488 -26.224 26.670 Atomic orbital electron populations 1.21957 0.94015 1.02022 1.02591 1.21076 0.96928 0.99333 0.92547 0.90099 1.21886 1.00848 0.94866 0.98490 1.22149 1.01818 0.93873 0.84534 1.48139 1.56435 1.20607 1.08193 1.19513 0.77212 0.80911 0.90465 1.90807 1.59105 1.62733 1.36140 1.22864 1.05032 0.99790 0.96352 1.23928 0.90776 0.93000 0.99490 1.19838 0.96651 0.96587 0.91381 1.22021 1.01719 0.99743 0.96959 1.21851 0.92774 1.02156 1.02886 1.21843 1.01032 0.93878 1.02783 1.21346 0.99405 0.92809 0.85833 1.21545 0.99211 0.94141 0.95998 0.93370 1.20877 0.95970 0.94821 0.85033 1.42714 1.57045 1.37306 1.02122 1.19716 1.22396 1.10531 0.84953 0.90202 1.25695 1.00597 0.98982 1.02080 1.69887 1.37387 1.26036 1.29096 0.85000 0.77215 0.77598 0.79505 1.18506 1.22159 1.21950 0.93453 0.89862 0.92775 0.86720 0.92212 0.86952 0.89329 0.81222 0.88650 0.91695 0.90500 0.91509 0.93094 0.90030 0.92738 0.92504 0.90073 0.93075 0.91156 0.93761 0.95729 0.95206 0.79950 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.11 71.98 0.58 -2.40 16 2 C -0.08 -1.82 2.71 -10.77 -0.03 -1.85 16 3 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 4 C -0.12 -2.04 5.61 30.53 0.17 -1.86 16 5 C 0.10 1.71 5.86 86.22 0.50 2.21 16 6 N -0.60 -17.98 2.98 -823.99 -2.45 -20.44 16 7 C 0.53 18.04 7.64 86.57 0.66 18.70 16 8 O -0.60 -28.19 15.67 -4.07 -0.06 -28.26 16 9 C -0.22 -5.08 8.32 23.43 0.19 -4.89 16 10 C -0.05 -1.17 8.33 24.52 0.20 -0.96 16 11 C -0.04 -0.64 0.99 -52.93 -0.05 -0.69 16 12 C -0.15 -1.42 7.13 71.98 0.51 -0.91 16 13 C -0.14 -1.88 8.46 71.98 0.61 -1.27 16 14 C -0.14 -1.77 8.45 71.98 0.61 -1.16 16 15 C 0.13 4.81 5.04 86.36 0.44 5.24 16 16 C -0.09 -3.07 2.15 -10.71 -0.02 -3.09 16 17 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 18 C 0.16 6.69 5.19 86.38 0.45 7.14 16 19 N -0.75 -41.36 5.38 -343.44 -1.85 -43.21 16 20 C -0.24 -14.48 9.99 84.03 0.84 -13.64 16 21 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 22 C -0.08 -5.01 5.50 84.86 0.47 -4.54 16 23 N -0.97 -64.51 13.06 21.65 0.28 -64.22 16 24 Si 0.98 48.65 29.55 68.60 2.03 50.68 16 25 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 27 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 28 H 0.05 1.11 6.58 -2.38 -0.02 1.09 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.13 4.99 -2.38 -0.01 1.11 16 31 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.11 8.14 -2.38 -0.02 1.10 16 33 H 0.11 1.31 5.30 -2.38 -0.01 1.30 16 34 H 0.09 1.30 6.70 -2.39 -0.02 1.29 16 35 H 0.17 2.47 3.55 -2.91 -0.01 2.46 16 36 H 0.10 2.74 7.50 -2.91 -0.02 2.72 16 37 H 0.06 0.60 7.50 -2.39 -0.02 0.58 16 38 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.07 0.58 7.50 -2.39 -0.02 0.56 16 40 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 41 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.07 2.51 6.69 -2.39 -0.02 2.49 16 47 H 0.04 2.16 6.23 -2.39 -0.01 2.15 16 48 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.03 1.23 6.73 -2.38 -0.02 1.21 16 50 H 0.37 22.45 6.89 -92.70 -0.64 21.82 16 51 H 0.25 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -81.44 385.58 4.35 -77.09 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: 0.26 Total: 32.34 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 6.14 Total: -3.99 kcal Atomic # 7 Polarization: -123.85 SS G_CDS: -4.02 Total: -127.87 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.06 Total: -28.26 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.03 Total: 50.68 kcal Total: -81.44 4.35 -77.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132724891.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.122 kcal (2) G-P(sol) polarization free energy of solvation -81.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds