Wall clock time and date at job start Fri Apr 10 2020 22:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53187 * 109.31314 * 58.64645 * 4 2 1 6 6 N 1.46921 * 108.77794 * 54.63631 * 5 4 2 7 7 C 1.34775 * 120.63610 * 126.41490 * 6 5 4 8 8 O 1.21279 * 120.00474 * 179.97438 * 7 6 5 9 9 C 1.50700 * 119.99525 * 359.97365 * 7 6 5 10 10 C 1.52998 * 109.47068 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46936 * 180.02562 * 10 9 7 12 12 C 1.53780 * 113.61462 * 274.13195 * 11 10 9 13 13 C 1.53953 * 87.02265 * 220.04942 * 12 11 10 14 14 C 1.53779 * 87.10857 * 25.36568 * 13 12 11 15 15 C 1.46931 * 118.73731 * 306.38846 * 6 5 4 16 16 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 17 17 H 1.08994 * 109.49602 * 181.37331 * 16 2 1 18 18 C 1.53005 * 109.49407 * 61.31095 * 16 2 1 19 19 N 1.46497 * 109.46686 * 174.99639 * 18 16 2 20 20 C 1.36941 * 119.99619 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00239 * 0.02562 * 20 19 18 22 22 C 1.38813 * 119.99827 * 180.02562 * 20 19 18 23 23 N 1.31615 * 119.99944 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99869 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47153 * 60.00282 * 24 22 20 26 26 H 1.48502 * 109.47009 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46997 * 299.99927 * 24 22 20 28 28 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 30 30 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 31 31 H 1.08992 * 109.49694 * 178.60260 * 4 2 1 32 32 H 1.09007 * 109.49236 * 298.69458 * 4 2 1 33 33 H 1.09007 * 109.58834 * 294.84955 * 5 4 2 34 34 H 1.09001 * 109.58662 * 174.42524 * 5 4 2 35 35 H 1.09002 * 109.47351 * 300.00520 * 9 7 6 36 36 H 1.09002 * 109.46897 * 60.00389 * 9 7 6 37 37 H 1.09002 * 109.47234 * 300.00316 * 10 9 7 38 38 H 1.08994 * 109.47036 * 60.00568 * 10 9 7 39 39 H 1.08997 * 112.85486 * 45.33717 * 11 10 9 40 40 H 1.09003 * 113.61683 * 334.57756 * 12 11 10 41 41 H 1.09003 * 113.61009 * 105.47229 * 12 11 10 42 42 H 1.08997 * 113.53798 * 270.81317 * 13 12 11 43 43 H 1.09004 * 113.66375 * 139.92975 * 13 12 11 44 44 H 1.08998 * 113.61523 * 220.08798 * 14 13 12 45 45 H 1.09003 * 113.61479 * 89.19008 * 14 13 12 46 46 H 1.08997 * 109.58885 * 293.82300 * 15 6 5 47 47 H 1.09000 * 109.70405 * 173.46383 * 15 6 5 48 48 H 1.08996 * 109.47305 * 294.99975 * 18 16 2 49 49 H 1.09008 * 109.47037 * 55.00272 * 18 16 2 50 50 H 0.96997 * 120.00098 * 0.02562 * 19 18 16 51 51 H 0.97000 * 119.99925 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 1.4989 -2.1541 1.2643 6 7 1.8619 -2.8090 0.0002 7 6 2.5147 -3.9881 0.0002 8 8 2.8083 -4.5188 -1.0500 9 6 2.8798 -4.6471 1.3054 10 6 3.6088 -5.9628 1.0259 11 6 3.9789 -6.6322 2.3511 12 6 5.3146 -6.1437 2.9360 13 6 5.5856 -7.6073 3.3292 14 6 4.6440 -8.0083 2.1814 15 6 1.4992 -2.1542 -1.2642 16 6 2.0399 -0.7210 -1.2500 17 1 3.1295 -0.7427 -1.2384 18 6 1.5571 0.0193 -2.4990 19 7 2.1427 -0.6001 -3.6905 20 6 1.8523 -0.1034 -4.9332 21 1 1.1920 0.7451 -5.0348 22 6 2.4067 -0.6906 -6.0622 23 7 3.2110 -1.7250 -5.9384 24 14 2.0101 -0.0135 -7.7575 25 1 2.4465 1.4036 -7.8391 26 1 2.7218 -0.8113 -8.7881 27 1 0.5461 -0.0949 -7.9929 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 3.1292 -0.7431 1.2386 32 1 1.6954 -0.1934 2.1399 33 1 0.4139 -2.1344 1.3673 34 1 1.9373 -2.7018 2.0986 35 1 3.5308 -3.9855 1.8769 36 1 1.9736 -4.8477 1.8770 37 1 2.9581 -6.6245 0.4543 38 1 4.5150 -5.7618 0.4546 39 1 3.1600 -6.6288 3.0703 40 1 6.0049 -5.7580 2.1858 41 1 5.1991 -5.4756 3.7896 42 1 5.2068 -7.8700 4.3168 43 1 6.6191 -7.9176 3.1746 44 1 3.9879 -8.8435 2.4266 45 1 5.1506 -8.1336 1.2245 46 1 0.4143 -2.1345 -1.3674 47 1 1.9358 -2.7012 -2.0998 48 1 0.4702 -0.0368 -2.5573 49 1 1.8647 1.0636 -2.4441 50 1 2.7360 -1.3620 -3.5992 51 1 3.5987 -2.1351 -6.7273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132741143.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:41 Heat of formation + Delta-G solvation = -27.250265 kcal Electronic energy + Delta-G solvation = -26337.006847 eV Core-core repulsion = 22850.227312 eV Total energy + Delta-G solvation = -3486.779535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.34700 -39.12210 -37.94799 -34.89623 -33.47421 -32.80547 -31.77168 -29.80748 -27.79163 -26.86326 -25.80762 -25.12897 -24.43614 -23.11942 -22.03542 -21.14599 -19.67938 -19.38738 -18.03653 -17.17828 -16.79274 -15.98852 -15.70608 -15.46463 -15.08119 -14.88412 -14.60068 -14.25782 -14.05282 -13.56740 -13.46586 -13.04888 -12.91934 -12.83546 -12.68135 -12.63785 -12.39256 -12.11049 -11.95200 -11.60945 -11.44929 -11.19768 -11.11600 -11.02578 -10.87155 -10.75659 -10.74988 -10.57266 -10.39260 -10.27967 -10.26040 -10.13244 -9.92441 -9.58074 -9.43363 -8.80009 -8.35563 -6.84110 -5.67280 -2.97010 2.85006 3.16467 3.48974 3.52767 3.54600 4.35036 4.44034 4.45695 4.62454 4.64345 4.68408 4.73400 4.87358 4.95315 5.02361 5.14364 5.22418 5.29202 5.33882 5.36060 5.46282 5.50123 5.57051 5.59339 5.61413 5.65346 5.68708 5.69827 5.71214 5.75320 5.85253 5.92830 5.94047 6.00313 6.04833 6.11559 6.18290 6.21344 6.35876 6.36896 6.38490 6.41180 6.64031 6.74107 6.83006 6.94348 7.62120 7.75926 8.42062 8.50473 9.61201 10.19796 10.53949 11.54964 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.014058 B = 0.003170 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.213887 B = 8830.859965 C =10438.133600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.129 4.129 5 C 0.106 3.894 6 N -0.613 5.613 7 C 0.506 3.494 8 O -0.531 6.531 9 C -0.135 4.135 10 C -0.096 4.096 11 C -0.111 4.111 12 C -0.139 4.139 13 C -0.144 4.144 14 C -0.138 4.138 15 C 0.119 3.881 16 C -0.102 4.102 17 H 0.072 0.928 18 C 0.161 3.839 19 N -0.733 5.733 20 C -0.242 4.242 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.930 5.930 24 Si 0.906 3.094 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.066 0.934 47 H 0.101 0.899 48 H 0.022 0.978 49 H 0.020 0.980 50 H 0.385 0.615 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.189 -5.782 24.464 25.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.167 4.167 5 C -0.017 4.017 6 N -0.347 5.347 7 C 0.294 3.706 8 O -0.407 6.407 9 C -0.175 4.175 10 C -0.133 4.133 11 C -0.129 4.129 12 C -0.176 4.176 13 C -0.182 4.182 14 C -0.175 4.175 15 C -0.002 4.002 16 C -0.121 4.121 17 H 0.091 0.909 18 C 0.033 3.967 19 N -0.378 5.378 20 C -0.373 4.373 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.578 5.578 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.084 0.916 47 H 0.120 0.880 48 H 0.040 0.960 49 H 0.037 0.963 50 H 0.219 0.781 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.094 -5.993 23.749 24.518 hybrid contribution -0.038 0.297 -0.876 0.925 sum -1.131 -5.696 22.873 23.599 Atomic orbital electron populations 1.21984 0.95273 1.01963 1.01740 1.21070 0.95982 0.99336 0.93990 0.90922 1.21944 1.01137 0.95227 0.98430 1.21741 1.00230 0.93680 0.86041 1.48206 1.57721 1.21247 1.07507 1.20740 0.77468 0.80782 0.91576 1.90764 1.53180 1.63184 1.33620 1.21675 1.01886 0.98239 0.95739 1.21349 1.01131 0.94655 0.96206 1.22583 0.96881 0.96152 0.97312 1.23035 0.97499 0.96355 1.00756 1.22841 0.99827 0.96925 0.98588 1.22936 0.98603 0.96863 0.99131 1.21704 0.99716 0.92885 0.85921 1.21678 1.00798 0.94554 0.95084 0.90938 1.20680 0.95929 0.94693 0.85447 1.42417 1.56858 1.37683 1.00807 1.19154 1.23359 1.10988 0.83829 0.91326 1.24757 1.00063 0.98310 0.97793 1.69666 1.35376 1.24125 1.28617 0.86286 0.77619 0.77976 0.84391 1.21348 1.21714 1.21317 0.92446 0.93196 0.91815 0.91555 0.90967 0.91265 0.90189 0.89232 0.89398 0.91068 0.90949 0.89414 0.89957 0.91720 0.90465 0.91631 0.91684 0.89910 0.91628 0.88031 0.96003 0.96263 0.78105 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.11 37.16 0.30 -1.43 16 2 C -0.08 -1.05 2.71 -90.57 -0.25 -1.29 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -1.27 5.62 -26.61 -0.15 -1.42 16 5 C 0.11 1.04 5.87 -3.72 -0.02 1.02 16 6 N -0.61 -8.62 2.97 -172.77 -0.51 -9.14 16 7 C 0.51 7.73 7.70 -10.99 -0.08 7.64 16 8 O -0.53 -10.83 15.40 5.56 0.09 -10.74 16 9 C -0.14 -1.39 4.04 -27.88 -0.11 -1.51 16 10 C -0.10 -1.03 4.33 -26.73 -0.12 -1.15 16 11 C -0.11 -0.92 3.64 -89.81 -0.33 -1.24 16 12 C -0.14 -1.08 7.65 -25.83 -0.20 -1.28 16 13 C -0.14 -1.05 8.09 -25.83 -0.21 -1.26 16 14 C -0.14 -1.12 7.64 -25.92 -0.20 -1.32 16 15 C 0.12 2.06 5.05 -3.71 -0.02 2.04 16 16 C -0.10 -1.68 2.15 -90.49 -0.19 -1.88 16 17 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 18 C 0.16 3.27 5.19 -4.04 -0.02 3.25 16 19 N -0.73 -19.25 5.38 -59.91 -0.32 -19.57 16 20 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -29.37 13.06 55.49 0.72 -28.65 16 24 Si 0.91 23.08 29.55 -169.99 -5.02 18.06 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H 0.06 0.66 4.98 -51.93 -0.26 0.40 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.80 6.58 -51.92 -0.34 0.46 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.07 0.62 6.69 -51.92 -0.35 0.27 16 34 H 0.08 0.59 5.93 -51.93 -0.31 0.28 16 35 H 0.09 0.78 7.69 -51.93 -0.40 0.38 16 36 H 0.09 0.72 7.94 -51.93 -0.41 0.30 16 37 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 38 H 0.07 0.91 7.83 -51.93 -0.41 0.50 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 46 H 0.07 1.10 6.69 -51.93 -0.35 0.75 16 47 H 0.10 2.22 6.22 -51.93 -0.32 1.89 16 48 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 49 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 50 H 0.38 10.86 6.90 -40.82 -0.28 10.58 16 51 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -33.79 384.96 -10.31 -44.10 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -9.22 Total: 7.58 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -1.84 Total: -7.45 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.11 Total: -57.36 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.79 -10.31 -44.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132741143.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.852 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds