Wall clock time and date at job start Fri Apr 10 2020 22:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53187 * 109.31314 * 58.64645 * 4 2 1 6 6 N 1.46921 * 108.77794 * 54.63631 * 5 4 2 7 7 C 1.34775 * 120.63610 * 126.41490 * 6 5 4 8 8 O 1.21279 * 120.00474 * 179.97438 * 7 6 5 9 9 C 1.50700 * 119.99525 * 359.97365 * 7 6 5 10 10 C 1.52998 * 109.47068 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46936 * 180.02562 * 10 9 7 12 12 C 1.53780 * 113.61462 * 274.13195 * 11 10 9 13 13 C 1.53953 * 87.02265 * 220.04942 * 12 11 10 14 14 C 1.53779 * 87.10857 * 25.36568 * 13 12 11 15 15 C 1.46931 * 118.73731 * 306.38846 * 6 5 4 16 16 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 17 17 H 1.08994 * 109.49602 * 181.37331 * 16 2 1 18 18 C 1.53005 * 109.49407 * 61.31095 * 16 2 1 19 19 N 1.46497 * 109.46686 * 174.99639 * 18 16 2 20 20 C 1.36941 * 119.99619 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00239 * 0.02562 * 20 19 18 22 22 C 1.38813 * 119.99827 * 180.02562 * 20 19 18 23 23 N 1.31615 * 119.99944 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99869 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47153 * 60.00282 * 24 22 20 26 26 H 1.48502 * 109.47009 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46997 * 299.99927 * 24 22 20 28 28 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 30 30 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 31 31 H 1.08992 * 109.49694 * 178.60260 * 4 2 1 32 32 H 1.09007 * 109.49236 * 298.69458 * 4 2 1 33 33 H 1.09007 * 109.58834 * 294.84955 * 5 4 2 34 34 H 1.09001 * 109.58662 * 174.42524 * 5 4 2 35 35 H 1.09002 * 109.47351 * 300.00520 * 9 7 6 36 36 H 1.09002 * 109.46897 * 60.00389 * 9 7 6 37 37 H 1.09002 * 109.47234 * 300.00316 * 10 9 7 38 38 H 1.08994 * 109.47036 * 60.00568 * 10 9 7 39 39 H 1.08997 * 112.85486 * 45.33717 * 11 10 9 40 40 H 1.09003 * 113.61683 * 334.57756 * 12 11 10 41 41 H 1.09003 * 113.61009 * 105.47229 * 12 11 10 42 42 H 1.08997 * 113.53798 * 270.81317 * 13 12 11 43 43 H 1.09004 * 113.66375 * 139.92975 * 13 12 11 44 44 H 1.08998 * 113.61523 * 220.08798 * 14 13 12 45 45 H 1.09003 * 113.61479 * 89.19008 * 14 13 12 46 46 H 1.08997 * 109.58885 * 293.82300 * 15 6 5 47 47 H 1.09000 * 109.70405 * 173.46383 * 15 6 5 48 48 H 1.08996 * 109.47305 * 294.99975 * 18 16 2 49 49 H 1.09008 * 109.47037 * 55.00272 * 18 16 2 50 50 H 0.96997 * 120.00098 * 0.02562 * 19 18 16 51 51 H 0.97000 * 119.99925 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 1.4989 -2.1541 1.2643 6 7 1.8619 -2.8090 0.0002 7 6 2.5147 -3.9881 0.0002 8 8 2.8083 -4.5188 -1.0500 9 6 2.8798 -4.6471 1.3054 10 6 3.6088 -5.9628 1.0259 11 6 3.9789 -6.6322 2.3511 12 6 5.3146 -6.1437 2.9360 13 6 5.5856 -7.6073 3.3292 14 6 4.6440 -8.0083 2.1814 15 6 1.4992 -2.1542 -1.2642 16 6 2.0399 -0.7210 -1.2500 17 1 3.1295 -0.7427 -1.2384 18 6 1.5571 0.0193 -2.4990 19 7 2.1427 -0.6001 -3.6905 20 6 1.8523 -0.1034 -4.9332 21 1 1.1920 0.7451 -5.0348 22 6 2.4067 -0.6906 -6.0622 23 7 3.2110 -1.7250 -5.9384 24 14 2.0101 -0.0135 -7.7575 25 1 2.4465 1.4036 -7.8391 26 1 2.7218 -0.8113 -8.7881 27 1 0.5461 -0.0949 -7.9929 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 3.1292 -0.7431 1.2386 32 1 1.6954 -0.1934 2.1399 33 1 0.4139 -2.1344 1.3673 34 1 1.9373 -2.7018 2.0986 35 1 3.5308 -3.9855 1.8769 36 1 1.9736 -4.8477 1.8770 37 1 2.9581 -6.6245 0.4543 38 1 4.5150 -5.7618 0.4546 39 1 3.1600 -6.6288 3.0703 40 1 6.0049 -5.7580 2.1858 41 1 5.1991 -5.4756 3.7896 42 1 5.2068 -7.8700 4.3168 43 1 6.6191 -7.9176 3.1746 44 1 3.9879 -8.8435 2.4266 45 1 5.1506 -8.1336 1.2245 46 1 0.4143 -2.1345 -1.3674 47 1 1.9358 -2.7012 -2.0998 48 1 0.4702 -0.0368 -2.5573 49 1 1.8647 1.0636 -2.4441 50 1 2.7360 -1.3620 -3.5992 51 1 3.5987 -2.1351 -6.7273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132741143.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:40 Heat of formation + Delta-G solvation = -47.951506 kcal Electronic energy + Delta-G solvation = -26337.904520 eV Core-core repulsion = 22850.227312 eV Total energy + Delta-G solvation = -3487.677208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.49672 -39.88097 -39.11428 -36.63445 -34.90581 -33.71624 -33.43520 -31.46447 -28.78899 -28.08906 -26.63760 -26.36845 -25.43001 -24.88827 -22.87107 -22.56329 -20.69644 -20.25648 -19.31580 -18.90407 -18.07856 -16.99572 -16.81313 -16.74198 -16.26035 -16.13969 -15.69091 -15.41366 -15.36617 -15.02672 -14.77070 -14.50589 -14.20739 -13.94055 -13.77091 -13.65518 -13.28282 -13.06516 -12.93412 -12.88320 -12.82280 -12.61169 -12.44678 -12.24066 -12.16726 -12.02538 -11.91866 -11.88246 -11.70980 -11.39005 -11.35221 -11.21894 -11.05317 -10.95900 -10.93252 -10.64477 -9.53923 -9.02828 -7.96163 -5.27075 1.42994 1.47814 1.54086 1.67738 2.05532 2.53817 3.36291 3.53143 3.68702 3.72222 3.79472 3.83837 3.86860 3.95966 4.02657 4.11433 4.18333 4.26171 4.32111 4.37786 4.41194 4.54600 4.57553 4.67540 4.68924 4.77881 4.79251 4.84891 4.87001 4.92839 4.93287 4.94157 5.02880 5.04687 5.10545 5.12672 5.19578 5.20666 5.26507 5.31173 5.33291 5.42059 5.45822 5.46431 5.58278 5.62291 5.71100 6.24042 6.50945 7.25610 7.29170 8.06049 8.28303 9.27200 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.014058 B = 0.003170 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.213887 B = 8830.859965 C =10438.133600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 H 0.078 0.922 4 C -0.123 4.123 5 C 0.098 3.902 6 N -0.610 5.610 7 C 0.494 3.506 8 O -0.599 6.599 9 C -0.121 4.121 10 C -0.094 4.094 11 C -0.103 4.103 12 C -0.139 4.139 13 C -0.139 4.139 14 C -0.147 4.147 15 C 0.129 3.871 16 C -0.089 4.089 17 H 0.047 0.953 18 C 0.159 3.841 19 N -0.749 5.749 20 C -0.248 4.248 21 H 0.079 0.921 22 C -0.081 4.081 23 N -0.973 5.973 24 Si 0.979 3.021 25 H -0.274 1.274 26 H -0.297 1.297 27 H -0.275 1.275 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.111 0.889 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.043 0.957 48 H 0.029 0.971 49 H 0.023 0.977 50 H 0.369 0.631 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.685 -4.432 28.290 28.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 H 0.096 0.904 4 C -0.161 4.161 5 C -0.023 4.023 6 N -0.342 5.342 7 C 0.284 3.716 8 O -0.480 6.480 9 C -0.160 4.160 10 C -0.132 4.132 11 C -0.121 4.121 12 C -0.176 4.176 13 C -0.176 4.176 14 C -0.185 4.185 15 C 0.005 3.995 16 C -0.109 4.109 17 H 0.065 0.935 18 C 0.032 3.968 19 N -0.391 5.391 20 C -0.379 4.379 21 H 0.097 0.903 22 C -0.273 4.273 23 N -0.624 5.624 24 Si 0.807 3.193 25 H -0.200 1.200 26 H -0.223 1.223 27 H -0.201 1.201 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.131 0.869 33 H 0.106 0.894 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.129 0.871 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.061 0.939 48 H 0.047 0.953 49 H 0.041 0.959 50 H 0.201 0.799 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.632 -4.580 27.650 28.150 hybrid contribution 0.398 -0.096 -2.039 2.079 sum -2.234 -4.676 25.611 26.130 Atomic orbital electron populations 1.21951 0.94045 1.02073 1.02474 1.21077 0.96903 0.99248 0.92706 0.90395 1.21952 1.00784 0.95130 0.98249 1.22179 1.01792 0.93764 0.84520 1.48326 1.56946 1.20969 1.07956 1.21796 0.76403 0.80715 0.92644 1.90740 1.55842 1.65004 1.36427 1.21713 1.03760 0.97550 0.93026 1.21288 0.99488 0.95103 0.97299 1.22586 0.97833 0.95667 0.96007 1.23021 0.96693 0.97039 1.00895 1.22846 0.99594 0.96337 0.98814 1.22978 0.99167 0.97357 0.98969 1.21298 0.99216 0.92728 0.86231 1.21531 0.99130 0.94358 0.95835 0.93482 1.20880 0.95903 0.94803 0.85176 1.42692 1.56891 1.37464 1.02091 1.19645 1.22537 1.10724 0.85026 0.90281 1.25697 1.00523 0.98956 1.02089 1.69873 1.37203 1.26017 1.29272 0.85135 0.77677 0.77516 0.78969 1.19979 1.22302 1.20127 0.92617 0.89945 0.93621 0.92218 0.86941 0.89387 0.86531 0.86471 0.85784 0.93289 0.93868 0.87072 0.91450 0.89923 0.88805 0.91760 0.90934 0.91625 0.91319 0.93862 0.95294 0.95942 0.79926 0.94119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.11 71.98 0.58 -2.33 16 2 C -0.08 -1.80 2.71 -10.76 -0.03 -1.83 16 3 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.12 -1.92 5.62 30.67 0.17 -1.75 16 5 C 0.10 1.53 5.87 86.36 0.51 2.04 16 6 N -0.61 -16.84 2.97 -818.91 -2.43 -19.27 16 7 C 0.49 15.35 7.70 87.66 0.67 16.03 16 8 O -0.60 -26.55 15.40 -3.03 -0.05 -26.60 16 9 C -0.12 -2.24 4.04 29.85 0.12 -2.12 16 10 C -0.09 -2.03 4.33 30.59 0.13 -1.90 16 11 C -0.10 -1.51 3.64 -10.27 -0.04 -1.54 16 12 C -0.14 -1.89 7.65 31.18 0.24 -1.65 16 13 C -0.14 -1.75 8.09 31.18 0.25 -1.50 16 14 C -0.15 -2.29 7.64 31.12 0.24 -2.05 16 15 C 0.13 4.64 5.05 86.36 0.44 5.07 16 16 C -0.09 -3.01 2.15 -10.71 -0.02 -3.04 16 17 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 18 C 0.16 6.65 5.19 86.38 0.45 7.10 16 19 N -0.75 -41.26 5.38 -343.44 -1.85 -43.11 16 20 C -0.25 -14.68 9.99 84.03 0.84 -13.84 16 21 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 22 C -0.08 -4.94 5.50 84.86 0.47 -4.47 16 23 N -0.97 -64.40 13.06 21.65 0.28 -64.12 16 24 Si 0.98 48.53 29.55 68.60 2.03 50.56 16 25 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 26 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 27 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 28 H 0.05 1.12 4.98 -2.39 -0.01 1.10 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 1.06 6.58 -2.38 -0.02 1.04 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.11 0.99 8.14 -2.38 -0.02 0.98 16 33 H 0.09 1.13 6.69 -2.38 -0.02 1.12 16 34 H 0.12 1.03 5.93 -2.39 -0.01 1.02 16 35 H 0.12 1.58 7.69 -2.39 -0.02 1.56 16 36 H 0.12 1.46 7.94 -2.39 -0.02 1.44 16 37 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 38 H 0.04 1.17 7.83 -2.39 -0.02 1.15 16 39 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.12 7.92 -2.39 -0.02 1.10 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 43 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.07 1.22 8.10 -2.39 -0.02 1.20 16 46 H 0.07 2.38 6.69 -2.39 -0.02 2.36 16 47 H 0.04 2.08 6.22 -2.39 -0.01 2.06 16 48 H 0.03 1.19 6.73 -2.39 -0.02 1.17 16 49 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 50 H 0.37 22.41 6.90 -92.71 -0.64 21.77 16 51 H 0.25 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -81.04 384.96 3.26 -77.78 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.26 Total: 32.54 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 5.02 Total: -7.79 kcal Atomic # 7 Polarization: -122.50 SS G_CDS: -4.00 Total: -126.50 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.05 Total: -26.60 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.03 Total: 50.56 kcal Total: -81.04 3.26 -77.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132741143.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.829 kcal (2) G-P(sol) polarization free energy of solvation -81.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds