Wall clock time and date at job start Fri Apr 10 2020 22:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.45993 * 2 1 4 4 C 1.53045 * 109.45999 * 240.03023 * 2 1 3 5 5 C 1.53185 * 109.31342 * 178.62643 * 4 2 1 6 6 N 1.46926 * 108.77524 * 54.63463 * 5 4 2 7 7 C 1.34787 * 120.62918 * 126.11612 * 6 5 4 8 8 O 1.21282 * 119.99956 * 180.02562 * 7 6 5 9 9 C 1.50697 * 119.99793 * 0.02562 * 7 6 5 10 10 C 1.53003 * 109.47058 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47247 * 179.97438 * 10 9 7 12 12 C 1.53775 * 113.61387 * 272.49654 * 11 10 9 13 13 C 1.53779 * 87.08198 * 220.01882 * 12 11 10 14 14 C 1.53781 * 113.61100 * 174.99906 * 11 10 9 15 15 C 1.46924 * 118.73991 * 306.39104 * 6 5 4 16 16 C 1.53038 * 109.44956 * 119.97206 * 2 1 3 17 17 H 1.09001 * 109.50363 * 61.42489 * 16 2 1 18 18 C 1.53000 * 109.49766 * 301.35847 * 16 2 1 19 19 N 1.46500 * 109.47323 * 175.00110 * 18 16 2 20 20 C 1.36945 * 119.99980 * 180.02562 * 19 18 16 21 21 H 1.07992 * 119.99830 * 0.02562 * 20 19 18 22 22 C 1.38807 * 119.99779 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99922 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99729 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47162 * 59.99770 * 24 22 20 26 26 H 1.48503 * 109.46825 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46836 * 299.99515 * 24 22 20 28 28 H 1.09007 * 109.46857 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46697 * 299.96606 * 1 2 3 30 30 H 1.08995 * 109.47328 * 59.96807 * 1 2 3 31 31 H 1.08998 * 109.49685 * 58.67168 * 4 2 1 32 32 H 1.09001 * 109.52360 * 298.59239 * 4 2 1 33 33 H 1.09001 * 109.59106 * 294.85078 * 5 4 2 34 34 H 1.09004 * 109.58960 * 174.42271 * 5 4 2 35 35 H 1.08997 * 109.47228 * 299.99525 * 9 7 6 36 36 H 1.08997 * 109.47248 * 60.00068 * 9 7 6 37 37 H 1.09003 * 109.46906 * 300.00171 * 10 9 7 38 38 H 1.09002 * 109.47351 * 59.99533 * 10 9 7 39 39 H 1.08998 * 112.84784 * 43.80269 * 11 10 9 40 40 H 1.08999 * 113.61547 * 334.56474 * 12 11 10 41 41 H 1.08995 * 113.61788 * 105.47171 * 12 11 10 42 42 H 1.09002 * 113.61566 * 270.88712 * 13 12 11 43 43 H 1.09006 * 113.61893 * 139.97933 * 13 12 11 44 44 H 1.09004 * 113.61126 * 254.52507 * 14 11 10 45 45 H 1.08992 * 113.62126 * 25.43248 * 14 11 10 46 46 H 1.09004 * 109.58777 * 173.39544 * 15 6 5 47 47 H 1.08994 * 109.58607 * 293.81880 * 15 6 5 48 48 H 1.08998 * 109.47469 * 295.00411 * 18 16 2 49 49 H 1.09005 * 109.46633 * 55.00129 * 18 16 2 50 50 H 0.96994 * 119.99925 * 0.02562 * 19 18 16 51 51 H 0.97001 * 119.99555 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2501 5 6 3.5713 -0.6889 -1.2641 6 7 4.0676 -1.2493 0.0002 7 6 4.9572 -2.2619 0.0002 8 8 5.3589 -2.7161 1.0506 9 6 5.4526 -2.8296 -1.3048 10 6 6.4453 -3.9598 -1.0252 11 6 6.9478 -4.5367 -2.3502 12 6 6.0571 -5.6576 -2.9113 13 6 7.3540 -6.3795 -3.3133 14 6 8.0455 -5.6005 -2.1819 15 6 3.5711 -0.6890 1.2644 16 6 2.0396 -0.7209 1.2501 17 1 1.6974 -1.7557 1.2383 18 6 1.5019 -0.0194 2.4990 19 7 1.8906 -0.7778 3.6906 20 6 1.5185 -0.3388 4.9332 21 1 0.9382 0.5663 5.0347 22 6 1.8873 -1.0571 6.0623 23 7 2.5941 -2.1604 5.9385 24 14 1.3791 -0.4585 7.7573 25 1 -0.1025 -0.3993 7.8377 26 1 1.8933 -1.3959 8.7879 27 1 1.9421 0.8951 7.9935 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5133 0.8903 30 1 -0.3634 0.5143 -0.8896 31 1 1.6573 -0.2208 -2.1398 32 1 1.6977 -1.7557 -1.2389 33 1 3.9145 0.3405 -1.3671 34 1 3.9417 -1.2849 -2.0983 35 1 4.6094 -3.2200 -1.8746 36 1 5.9466 -2.0452 -1.8781 37 1 7.2886 -3.5699 -0.4551 38 1 5.9510 -4.7442 -0.4520 39 1 7.1947 -3.7663 -3.0807 40 1 5.4836 -6.1830 -2.1477 41 1 5.4486 -5.3478 -3.7608 42 1 7.7113 -6.1138 -4.3082 43 1 7.3240 -7.4564 -3.1469 44 1 9.0422 -5.2445 -2.4428 45 1 8.0156 -6.1103 -1.2191 46 1 3.9413 -1.2850 2.0986 47 1 3.9142 0.3404 1.3675 48 1 1.9166 0.9869 2.5575 49 1 0.4148 0.0383 2.4436 50 1 2.4115 -1.5909 3.5994 51 1 2.8515 -2.6626 6.7275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132741145.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:44 Heat of formation + Delta-G solvation = -50.720557 kcal Electronic energy + Delta-G solvation = -26205.379599 eV Core-core repulsion = 22717.582316 eV Total energy + Delta-G solvation = -3487.797283 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.38564 -39.83335 -39.05116 -36.61379 -35.07193 -33.81388 -33.42435 -31.44640 -29.38435 -27.94382 -26.65844 -26.33856 -24.95511 -24.28399 -22.79115 -22.57279 -21.06852 -20.31771 -19.77640 -19.14154 -18.00750 -17.01452 -16.81667 -16.75648 -16.28186 -15.66476 -15.58308 -15.48827 -15.24744 -14.96411 -14.78876 -14.34955 -14.21627 -14.04834 -13.84122 -13.65321 -13.28453 -13.06269 -13.05297 -12.88611 -12.74645 -12.64647 -12.58644 -12.26358 -12.19975 -12.01606 -11.91671 -11.87717 -11.76839 -11.39221 -11.31980 -11.18924 -11.03512 -10.95891 -10.94421 -10.63154 -9.60322 -9.01741 -7.95879 -5.26630 1.43063 1.47852 1.54108 1.67272 2.05130 2.54008 3.36587 3.53045 3.68470 3.70053 3.79349 3.83350 3.86233 3.96551 4.02700 4.08650 4.18530 4.25993 4.30964 4.37534 4.42181 4.58148 4.61096 4.67302 4.70678 4.76838 4.80198 4.86219 4.88087 4.92950 4.94004 4.96881 4.99403 5.04793 5.09748 5.12586 5.13893 5.19887 5.24116 5.30061 5.33364 5.45093 5.45991 5.46915 5.58443 5.59847 5.71079 6.24403 6.50177 7.25066 7.29505 8.06569 8.28711 9.27494 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.013698 B = 0.003152 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.674456 B = 8882.504551 C =10491.650754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 H 0.082 0.918 4 C -0.123 4.123 5 C 0.100 3.900 6 N -0.611 5.611 7 C 0.494 3.506 8 O -0.599 6.599 9 C -0.121 4.121 10 C -0.094 4.094 11 C -0.103 4.103 12 C -0.139 4.139 13 C -0.139 4.139 14 C -0.147 4.147 15 C 0.126 3.874 16 C -0.087 4.087 17 H 0.047 0.953 18 C 0.156 3.844 19 N -0.749 5.749 20 C -0.247 4.247 21 H 0.079 0.921 22 C -0.081 4.081 23 N -0.973 5.973 24 Si 0.979 3.021 25 H -0.274 1.274 26 H -0.297 1.297 27 H -0.275 1.275 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.112 0.888 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.045 0.955 47 H 0.066 0.934 48 H 0.022 0.978 49 H 0.033 0.967 50 H 0.369 0.631 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.414 0.597 -28.302 28.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 H 0.101 0.899 4 C -0.161 4.161 5 C -0.021 4.021 6 N -0.344 5.344 7 C 0.285 3.715 8 O -0.480 6.480 9 C -0.160 4.160 10 C -0.132 4.132 11 C -0.121 4.121 12 C -0.177 4.177 13 C -0.176 4.176 14 C -0.185 4.185 15 C 0.003 3.997 16 C -0.106 4.106 17 H 0.066 0.934 18 C 0.030 3.970 19 N -0.391 5.391 20 C -0.378 4.378 21 H 0.097 0.903 22 C -0.273 4.273 23 N -0.624 5.624 24 Si 0.807 3.193 25 H -0.200 1.200 26 H -0.223 1.223 27 H -0.201 1.201 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.130 0.870 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.064 0.936 47 H 0.085 0.915 48 H 0.040 0.960 49 H 0.051 0.949 50 H 0.201 0.799 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.534 0.494 -27.663 28.036 hybrid contribution 0.018 -0.381 2.044 2.079 sum 4.552 0.113 -25.619 26.020 Atomic orbital electron populations 1.21857 0.94395 1.01629 1.02358 1.21095 0.96370 0.99599 0.92738 0.89917 1.21988 0.94651 1.01221 0.98223 1.22159 0.94709 1.00748 0.84513 1.48356 1.43003 1.34998 1.07994 1.21808 0.78258 0.78818 0.92659 1.90741 1.59452 1.61390 1.36424 1.21717 1.01454 0.99868 0.93007 1.21294 0.97779 0.96819 0.97305 1.22587 0.96830 0.96580 0.96094 1.22991 0.96614 0.97108 1.00944 1.22820 0.96545 0.99308 0.98929 1.22983 0.98530 0.97926 0.99032 1.21322 0.94042 0.98017 0.86358 1.21548 0.93948 0.99341 0.95810 0.93445 1.20934 0.97142 0.93818 0.85140 1.42687 1.65201 1.29130 1.02090 1.19642 1.26920 1.06253 0.85027 0.90279 1.25692 1.01571 0.97957 1.02076 1.69876 1.44364 1.18898 1.29242 0.85138 0.78030 0.77152 0.78999 1.19988 1.22325 1.20137 0.93629 0.93419 0.90073 0.86936 0.92277 0.89500 0.86403 0.86447 0.85750 0.93282 0.93868 0.87019 0.91468 0.89958 0.88782 0.91772 0.90917 0.91627 0.93639 0.91546 0.96040 0.94890 0.79946 0.94139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.82 71.98 0.63 -2.45 16 2 C -0.08 -1.76 2.23 -10.77 -0.02 -1.79 16 3 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.12 -1.91 5.36 30.67 0.16 -1.74 16 5 C 0.10 1.54 6.34 86.36 0.55 2.08 16 6 N -0.61 -16.92 2.97 -818.90 -2.43 -19.35 16 7 C 0.49 15.37 7.70 87.65 0.67 16.05 16 8 O -0.60 -26.57 15.39 -3.04 -0.05 -26.62 16 9 C -0.12 -2.24 4.04 29.85 0.12 -2.12 16 10 C -0.09 -2.04 4.34 30.59 0.13 -1.91 16 11 C -0.10 -1.51 3.65 -10.27 -0.04 -1.54 16 12 C -0.14 -1.90 7.63 31.12 0.24 -1.66 16 13 C -0.14 -1.76 8.08 31.12 0.25 -1.51 16 14 C -0.15 -2.29 7.64 31.12 0.24 -2.05 16 15 C 0.13 4.56 5.52 86.36 0.48 5.04 16 16 C -0.09 -2.93 1.92 -10.72 -0.02 -2.95 16 17 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 18 C 0.16 6.51 5.41 86.38 0.47 6.98 16 19 N -0.75 -41.17 5.38 -343.45 -1.85 -43.02 16 20 C -0.25 -14.60 9.99 84.03 0.84 -13.76 16 21 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 22 C -0.08 -4.96 5.50 84.86 0.47 -4.49 16 23 N -0.97 -64.40 13.06 21.65 0.28 -64.12 16 24 Si 0.98 48.53 29.55 68.60 2.03 50.56 16 25 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 26 H -0.30 -14.87 7.11 99.48 0.71 -14.17 16 27 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 28 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.05 1.17 6.29 -2.39 -0.02 1.16 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.12 1.02 5.93 -2.38 -0.01 1.01 16 35 H 0.12 1.58 7.70 -2.39 -0.02 1.56 16 36 H 0.12 1.46 7.94 -2.39 -0.02 1.44 16 37 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 38 H 0.04 1.17 7.80 -2.39 -0.02 1.15 16 39 H 0.11 1.17 8.13 -2.39 -0.02 1.15 16 40 H 0.07 1.12 7.89 -2.39 -0.02 1.10 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 46 H 0.04 2.18 6.22 -2.38 -0.01 2.17 16 47 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 48 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.03 1.35 6.14 -2.38 -0.01 1.34 16 50 H 0.37 22.37 6.90 -92.71 -0.64 21.73 16 51 H 0.25 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -81.09 390.96 3.40 -77.70 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.24 Total: 32.67 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 5.17 Total: -7.83 kcal Atomic # 7 Polarization: -122.48 SS G_CDS: -4.00 Total: -126.48 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.05 Total: -26.62 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.03 Total: 50.56 kcal Total: -81.09 3.40 -77.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132741145.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.976 kcal (2) G-P(sol) polarization free energy of solvation -81.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds