Wall clock time and date at job start Fri Apr 10 2020 22:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46135 * 2 1 4 4 C 1.53040 * 109.44989 * 119.97290 * 2 1 3 5 5 C 1.52760 * 109.38219 * 181.25300 * 4 2 1 6 6 N 1.46921 * 109.00903 * 305.58856 * 5 4 2 7 7 C 1.34780 * 120.63059 * 233.58159 * 6 5 4 8 8 O 1.21280 * 120.00423 * 179.71638 * 7 6 5 9 9 C 1.50701 * 119.99795 * 359.72315 * 7 6 5 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53784 * 113.61698 * 272.49867 * 11 10 9 13 13 C 1.53776 * 87.08172 * 220.01477 * 12 11 10 14 14 C 1.53781 * 87.08478 * 25.43322 * 13 12 11 15 15 C 1.46926 * 118.74177 * 53.30762 * 6 5 4 16 16 C 1.53042 * 109.46053 * 240.03297 * 2 1 3 17 17 H 1.08998 * 109.49938 * 298.58320 * 16 2 1 18 18 C 1.53007 * 109.49782 * 58.67395 * 16 2 1 19 19 N 1.46501 * 109.47045 * 184.84048 * 18 16 2 20 20 C 1.36937 * 119.99910 * 180.02562 * 19 18 16 21 21 H 1.08009 * 119.99550 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00244 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99908 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00203 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46796 * 90.00155 * 24 22 20 26 26 H 1.48504 * 109.47242 * 209.99885 * 24 22 20 27 27 H 1.48497 * 109.47053 * 330.00049 * 24 22 20 28 28 H 1.09007 * 109.47332 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47361 * 299.96642 * 1 2 3 30 30 H 1.08999 * 109.47492 * 59.97173 * 1 2 3 31 31 H 1.09000 * 109.49238 * 301.32496 * 4 2 1 32 32 H 1.08995 * 109.49705 * 61.42555 * 4 2 1 33 33 H 1.08996 * 109.51231 * 185.70448 * 5 4 2 34 34 H 1.09004 * 109.43180 * 65.41890 * 5 4 2 35 35 H 1.09002 * 109.47060 * 299.99722 * 9 7 6 36 36 H 1.09001 * 109.47380 * 59.99809 * 9 7 6 37 37 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 38 38 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 39 39 H 1.09005 * 112.85032 * 43.80436 * 11 10 9 40 40 H 1.08997 * 113.61152 * 334.56449 * 12 11 10 41 41 H 1.09002 * 113.61200 * 105.47034 * 12 11 10 42 42 H 1.08996 * 113.61902 * 270.88222 * 13 12 11 43 43 H 1.08998 * 113.61637 * 139.97801 * 13 12 11 44 44 H 1.08999 * 113.61544 * 220.02072 * 14 13 12 45 45 H 1.08997 * 113.61982 * 89.10932 * 14 13 12 46 46 H 1.09005 * 109.58410 * 66.43252 * 15 6 5 47 47 H 1.09001 * 109.58875 * 186.70894 * 15 6 5 48 48 H 1.08995 * 109.47018 * 304.84199 * 18 16 2 49 49 H 1.08999 * 109.46836 * 64.84051 * 18 16 2 50 50 H 0.96994 * 120.00097 * 359.97438 * 19 18 16 51 51 H 0.96999 * 119.99704 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7209 1.2501 5 6 3.5668 -0.6928 1.2643 6 7 4.0675 -1.2493 0.0001 7 6 4.9610 -2.2584 0.0001 8 8 5.3628 -2.7126 -1.0501 9 6 5.4605 -2.8225 1.3053 10 6 6.4571 -3.9492 1.0258 11 6 6.9647 -4.5215 2.3507 12 6 8.1882 -3.7793 2.9140 13 6 8.7408 -5.1571 3.3153 14 6 7.8823 -5.7441 2.1825 15 6 3.5713 -0.6889 -1.2641 16 6 2.0398 -0.7208 -1.2501 17 1 1.6975 -1.7556 -1.2385 18 6 1.5029 -0.0187 -2.4991 19 7 1.8951 -0.7750 -3.6909 20 6 1.5252 -0.3345 -4.9337 21 1 0.9440 0.5702 -5.0350 22 6 1.8973 -1.0507 -6.0630 23 7 2.6060 -2.1529 -5.9395 24 14 1.3921 -0.4503 -7.7582 25 1 2.4381 0.4578 -8.2937 26 1 1.2329 -1.6130 -8.6682 27 1 0.1038 0.2818 -7.6605 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5133 0.8903 30 1 -0.3634 0.5143 -0.8897 31 1 1.6569 -0.2208 2.1398 32 1 1.6973 -1.7557 1.2382 33 1 3.9342 -1.2913 2.0979 34 1 3.9096 0.3364 1.3717 35 1 5.9523 -2.0354 1.8768 36 1 4.6196 -3.2152 1.8769 37 1 5.9649 -4.7363 0.4544 38 1 7.2980 -3.5570 0.4539 39 1 6.1686 -4.6702 3.0803 40 1 8.7824 -3.2757 2.1515 41 1 7.9563 -3.1374 3.7639 42 1 8.4311 -5.4790 4.3095 43 1 9.8130 -5.2625 3.1501 44 1 7.4035 -6.6883 2.4419 45 1 8.3929 -5.7776 1.2201 46 1 3.9144 0.3406 -1.3672 47 1 3.9437 -1.2833 -2.0985 48 1 0.4157 0.0369 -2.4455 49 1 1.9159 0.9884 -2.5555 50 1 2.4174 -1.5872 -3.5999 51 1 2.8663 -2.6531 -6.7287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132741146.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:47 Heat of formation + Delta-G solvation = -50.857892 kcal Electronic energy + Delta-G solvation = -26171.195556 eV Core-core repulsion = 22683.392318 eV Total energy + Delta-G solvation = -3487.803238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.39135 -39.83499 -39.05451 -36.62061 -35.07209 -33.81688 -33.42956 -31.45823 -29.39647 -27.94506 -26.65526 -26.33775 -24.95698 -24.27646 -22.79101 -22.57508 -21.06876 -20.32882 -19.76160 -19.14565 -18.01228 -17.00273 -16.82525 -16.76003 -16.28512 -15.63662 -15.58220 -15.48483 -15.33928 -14.94924 -14.72494 -14.37938 -14.18490 -14.00484 -13.94009 -13.65321 -13.27913 -13.06999 -13.05255 -12.86031 -12.78621 -12.63539 -12.60457 -12.25396 -12.16615 -11.98319 -11.91686 -11.89523 -11.76809 -11.39112 -11.31689 -11.18959 -11.03366 -10.96076 -10.95530 -10.63127 -9.60592 -9.01781 -7.96077 -5.26746 1.43107 1.46586 1.55017 1.67254 2.04901 2.53803 3.36581 3.53007 3.68528 3.69901 3.79223 3.83390 3.86496 3.96272 4.02739 4.09207 4.19361 4.26306 4.30341 4.36029 4.42904 4.58438 4.60826 4.67597 4.71493 4.76802 4.80327 4.86209 4.87808 4.93106 4.94116 4.97041 4.99626 5.05009 5.09808 5.12801 5.13932 5.20165 5.24117 5.29914 5.33346 5.45051 5.46575 5.47055 5.58466 5.59885 5.70838 6.24379 6.50110 7.24978 7.29444 8.06443 8.28552 9.27496 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.003105 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.030643 B = 9015.259458 C =10706.267793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 H 0.082 0.918 4 C -0.123 4.123 5 C 0.100 3.900 6 N -0.611 5.611 7 C 0.494 3.506 8 O -0.599 6.599 9 C -0.121 4.121 10 C -0.094 4.094 11 C -0.104 4.104 12 C -0.136 4.136 13 C -0.139 4.139 14 C -0.148 4.148 15 C 0.126 3.874 16 C -0.087 4.087 17 H 0.048 0.952 18 C 0.156 3.844 19 N -0.749 5.749 20 C -0.245 4.245 21 H 0.080 0.920 22 C -0.082 4.082 23 N -0.973 5.973 24 Si 0.978 3.022 25 H -0.287 1.287 26 H -0.296 1.296 27 H -0.265 1.265 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.118 0.882 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.044 0.956 38 H 0.047 0.953 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.045 0.955 48 H 0.033 0.967 49 H 0.022 0.978 50 H 0.369 0.631 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.977 1.163 28.334 28.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 H 0.101 0.899 4 C -0.161 4.161 5 C -0.021 4.021 6 N -0.343 5.343 7 C 0.285 3.715 8 O -0.480 6.480 9 C -0.160 4.160 10 C -0.132 4.132 11 C -0.122 4.122 12 C -0.174 4.174 13 C -0.176 4.176 14 C -0.186 4.186 15 C 0.003 3.997 16 C -0.106 4.106 17 H 0.066 0.934 18 C 0.030 3.970 19 N -0.391 5.391 20 C -0.377 4.377 21 H 0.097 0.903 22 C -0.274 4.274 23 N -0.624 5.624 24 Si 0.807 3.193 25 H -0.214 1.214 26 H -0.223 1.223 27 H -0.189 1.189 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.131 0.869 32 H 0.077 0.923 33 H 0.136 0.864 34 H 0.104 0.896 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.127 0.873 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.064 0.936 48 H 0.051 0.949 49 H 0.040 0.960 50 H 0.201 0.799 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.088 1.067 27.699 28.183 hybrid contribution 0.063 -0.372 -2.049 2.083 sum 5.152 0.695 25.650 26.172 Atomic orbital electron populations 1.21856 0.94374 1.01644 1.02358 1.21095 0.96385 0.99589 0.92735 0.89943 1.21917 0.94669 1.01261 0.98257 1.22064 0.94740 1.00796 0.84522 1.48351 1.42755 1.35249 1.07983 1.21804 0.78286 0.78786 0.92659 1.90740 1.59588 1.61240 1.36430 1.21717 1.01231 1.00084 0.93004 1.21290 0.97904 0.96693 0.97293 1.22591 0.97100 0.96466 0.96077 1.22985 0.96706 0.96710 1.00980 1.22814 0.99493 0.96478 0.98802 1.22993 0.98470 0.98004 0.99133 1.21320 0.94065 0.98005 0.86357 1.21546 0.93910 0.99368 0.95810 0.93394 1.20935 0.97136 0.93833 0.85132 1.42693 1.65084 1.29257 1.02068 1.19677 1.26784 1.06224 0.84993 0.90261 1.25691 1.01618 0.97979 1.02063 1.69883 1.44319 1.19056 1.29130 0.85071 0.78207 0.76723 0.79339 1.21373 1.22268 1.18920 0.93603 0.90074 0.93423 0.86885 0.92252 0.86410 0.89577 0.85984 0.86231 0.93729 0.93418 0.87295 0.91135 0.89895 0.88920 0.91631 0.91190 0.91515 0.91609 0.93633 0.94874 0.96040 0.79942 0.94148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.81 71.98 0.63 -2.43 16 2 C -0.08 -1.76 2.23 -10.77 -0.02 -1.78 16 3 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 4 C -0.12 -1.90 5.34 30.53 0.16 -1.74 16 5 C 0.10 1.54 6.31 86.22 0.54 2.08 16 6 N -0.61 -16.92 2.98 -819.75 -2.44 -19.36 16 7 C 0.49 15.38 7.70 87.66 0.67 16.05 16 8 O -0.60 -26.57 15.39 -3.03 -0.05 -26.61 16 9 C -0.12 -2.24 4.04 29.85 0.12 -2.12 16 10 C -0.09 -2.04 4.34 30.59 0.13 -1.90 16 11 C -0.10 -1.53 3.65 -10.27 -0.04 -1.57 16 12 C -0.14 -1.75 7.63 31.12 0.24 -1.51 16 13 C -0.14 -1.70 8.08 31.12 0.25 -1.45 16 14 C -0.15 -2.33 7.64 31.12 0.24 -2.09 16 15 C 0.13 4.56 5.52 86.36 0.48 5.04 16 16 C -0.09 -2.92 1.92 -10.71 -0.02 -2.94 16 17 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 18 C 0.16 6.50 5.41 86.38 0.47 6.97 16 19 N -0.75 -41.11 5.38 -343.44 -1.85 -42.95 16 20 C -0.25 -14.49 9.99 84.03 0.84 -13.65 16 21 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 22 C -0.08 -4.99 5.50 84.86 0.47 -4.53 16 23 N -0.97 -64.37 13.06 21.65 0.28 -64.09 16 24 Si 0.98 48.55 29.55 68.60 2.03 50.58 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 26 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 27 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 28 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.08 1.22 8.14 -2.38 -0.02 1.21 16 30 H 0.05 1.17 6.30 -2.39 -0.02 1.15 16 31 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.12 1.02 5.93 -2.39 -0.01 1.01 16 34 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.12 1.51 7.95 -2.39 -0.02 1.49 16 36 H 0.12 1.54 7.68 -2.39 -0.02 1.52 16 37 H 0.04 1.20 8.10 -2.39 -0.02 1.18 16 38 H 0.05 1.24 7.80 -2.39 -0.02 1.22 16 39 H 0.11 1.21 8.13 -2.38 -0.02 1.19 16 40 H 0.07 1.07 7.89 -2.39 -0.02 1.05 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.07 1.23 8.10 -2.39 -0.02 1.22 16 46 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 47 H 0.05 2.18 6.21 -2.39 -0.01 2.17 16 48 H 0.03 1.36 6.15 -2.39 -0.01 1.34 16 49 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.37 22.35 6.89 -92.71 -0.64 21.71 16 51 H 0.25 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -81.04 390.93 3.38 -77.66 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.24 Total: 32.37 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 5.16 Total: -7.58 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -4.01 Total: -126.41 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.05 Total: -26.61 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.58 kcal Total: -81.04 3.38 -77.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132741146.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.799 kcal (2) G-P(sol) polarization free energy of solvation -81.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds