Wall clock time and date at job start Fri Apr 10 2020 22:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53191 * 109.31132 * 181.37889 * 4 2 1 6 6 N 1.46921 * 108.77411 * 305.35957 * 5 4 2 7 7 C 1.34777 * 120.63225 * 233.58641 * 6 5 4 8 8 O 1.21282 * 119.99945 * 180.02562 * 7 6 5 9 9 C 1.50700 * 119.99997 * 0.02846 * 7 6 5 10 10 C 1.53785 * 113.61122 * 279.13404 * 9 7 6 11 11 C 1.53951 * 87.01692 * 220.04620 * 10 9 7 12 12 C 1.52996 * 113.54174 * 270.81486 * 11 10 9 13 13 C 1.53007 * 113.74334 * 139.94320 * 11 10 9 14 14 C 1.53774 * 113.61325 * 181.52694 * 9 7 6 15 15 C 1.46925 * 118.73795 * 53.61317 * 6 5 4 16 16 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 17 17 H 1.08995 * 109.49919 * 298.61631 * 16 2 1 18 18 C 1.53006 * 109.49435 * 58.68107 * 16 2 1 19 19 N 1.46495 * 109.46960 * 185.00197 * 18 16 2 20 20 C 1.36936 * 119.99962 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00154 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00066 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99844 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00115 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47385 * 60.00127 * 24 22 20 26 26 H 1.48498 * 109.47356 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47272 * 300.00100 * 24 22 20 28 28 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 30 30 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 31 31 H 1.09004 * 109.49679 * 301.32867 * 4 2 1 32 32 H 1.08994 * 109.49744 * 61.42383 * 4 2 1 33 33 H 1.09002 * 109.58035 * 185.57574 * 5 4 2 34 34 H 1.09002 * 109.58818 * 65.15445 * 5 4 2 35 35 H 1.08996 * 112.84692 * 50.33109 * 9 7 6 36 36 H 1.09002 * 113.61366 * 334.56611 * 10 9 7 37 37 H 1.09000 * 113.61116 * 105.47209 * 10 9 7 38 38 H 1.08995 * 109.47449 * 157.49867 * 12 11 10 39 39 H 1.09008 * 109.46876 * 277.49682 * 12 11 10 40 40 H 1.08998 * 109.47208 * 37.49226 * 12 11 10 41 41 H 1.08999 * 109.46604 * 322.40362 * 13 11 10 42 42 H 1.08999 * 109.46844 * 82.40284 * 13 11 10 43 43 H 1.08998 * 109.47248 * 202.40753 * 13 11 10 44 44 H 1.08997 * 113.61420 * 254.52564 * 14 9 7 45 45 H 1.08999 * 113.61633 * 25.43066 * 14 9 7 46 46 H 1.09003 * 109.59222 * 186.59958 * 15 6 5 47 47 H 1.09006 * 109.70276 * 66.24587 * 15 6 5 48 48 H 1.09001 * 109.46991 * 304.99842 * 18 16 2 49 49 H 1.09000 * 109.47170 * 64.99839 * 18 16 2 50 50 H 0.97002 * 120.00280 * 359.97438 * 19 18 16 51 51 H 0.96999 * 119.99556 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 3.5711 -0.6890 1.2645 6 7 4.0675 -1.2494 0.0004 7 6 4.9616 -2.2580 0.0005 8 8 5.3641 -2.7117 -1.0497 9 6 5.4610 -2.8220 1.3057 10 6 6.5777 -1.9848 1.9514 11 6 7.2503 -3.3179 2.3261 12 6 6.8057 -3.8666 3.6833 13 6 8.7711 -3.3093 2.1581 14 6 6.5026 -3.9404 1.1351 15 6 3.5714 -0.6891 -1.2639 16 6 2.0399 -0.7210 -1.2500 17 1 1.6971 -1.7556 -1.2385 18 6 1.5031 -0.0189 -2.4990 19 7 1.8919 -0.7773 -3.6906 20 6 1.5215 -0.3373 -4.9333 21 1 0.9424 0.5685 -5.0350 22 6 1.8904 -1.0557 -6.0624 23 7 2.5967 -2.1595 -5.9385 24 14 1.3846 -0.4559 -7.7575 25 1 1.9495 0.8973 -7.9929 26 1 1.8985 -1.3934 -8.7881 27 1 -0.0969 -0.3949 -7.8393 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.6569 -0.2207 2.1399 32 1 1.6973 -1.7556 1.2384 33 1 3.9411 -1.2850 2.0988 34 1 3.9142 0.3405 1.3677 35 1 4.6542 -3.0778 1.9925 36 1 7.1491 -1.3932 1.2361 37 1 6.2461 -1.4048 2.8127 38 1 6.9806 -4.9419 3.7155 39 1 7.3760 -3.3818 4.4757 40 1 5.7437 -3.6668 3.8257 41 1 9.0353 -2.7334 1.2711 42 1 9.2310 -2.8558 3.0361 43 1 9.1303 -4.3324 2.0472 44 1 6.1105 -4.9369 1.3383 45 1 7.0534 -3.8845 0.1962 46 1 3.9416 -1.2851 -2.0981 47 1 3.9145 0.3401 -1.3695 48 1 0.4160 0.0393 -2.4442 49 1 1.9184 0.9872 -2.5571 50 1 2.4124 -1.5908 -3.5993 51 1 2.8541 -2.6616 -6.7275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132793843.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:52 Heat of formation + Delta-G solvation = -24.927118 kcal Electronic energy + Delta-G solvation = -26788.673504 eV Core-core repulsion = 23301.994708 eV Total energy + Delta-G solvation = -3486.678796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.82108 -39.14717 -37.44159 -34.91603 -33.62365 -31.89948 -31.11064 -29.74039 -28.16365 -27.68244 -26.01715 -25.71843 -24.19012 -23.16495 -22.51118 -21.18035 -19.77728 -18.75174 -18.42383 -17.23943 -16.88436 -15.89461 -15.50498 -14.84507 -14.80046 -14.40041 -14.34209 -14.29966 -13.88051 -13.52560 -13.42147 -13.15499 -13.07660 -12.88939 -12.87830 -12.54120 -12.41417 -12.08132 -11.86962 -11.73210 -11.69051 -11.49478 -11.23461 -11.00088 -10.93842 -10.84851 -10.75388 -10.55369 -10.47019 -10.29298 -10.24582 -10.10901 -9.91388 -9.56497 -9.34900 -8.79709 -8.39611 -6.83390 -5.66978 -2.96629 2.81750 3.17447 3.49087 3.52902 3.54738 4.20845 4.35071 4.44145 4.54344 4.62612 4.71951 4.80069 4.89342 4.94844 5.03861 5.18303 5.23394 5.33006 5.38370 5.39074 5.43721 5.51393 5.59724 5.64444 5.64944 5.69990 5.70614 5.71411 5.75757 5.78609 5.84722 5.91324 5.95259 5.98093 6.00578 6.06332 6.16572 6.23038 6.28451 6.32841 6.36595 6.49047 6.63245 6.74031 6.86337 6.94625 7.62785 7.76150 8.42770 8.50771 9.61467 10.20188 10.54303 11.55243 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.003455 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.244374 B = 8101.960681 C = 9564.621914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.070 0.930 4 C -0.129 4.129 5 C 0.109 3.891 6 N -0.610 5.610 7 C 0.518 3.482 8 O -0.531 6.531 9 C -0.135 4.135 10 C -0.113 4.113 11 C -0.091 4.091 12 C -0.128 4.128 13 C -0.135 4.135 14 C -0.108 4.108 15 C 0.119 3.881 16 C -0.101 4.101 17 H 0.073 0.927 18 C 0.159 3.841 19 N -0.733 5.733 20 C -0.242 4.242 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.930 5.930 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.287 1.287 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.063 0.937 48 H 0.026 0.974 49 H 0.017 0.983 50 H 0.385 0.615 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.811 0.879 24.520 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.168 4.168 5 C -0.014 4.014 6 N -0.344 5.344 7 C 0.306 3.694 8 O -0.406 6.406 9 C -0.156 4.156 10 C -0.151 4.151 11 C -0.091 4.091 12 C -0.185 4.185 13 C -0.192 4.192 14 C -0.146 4.146 15 C -0.003 4.003 16 C -0.121 4.121 17 H 0.091 0.909 18 C 0.031 3.969 19 N -0.377 5.377 20 C -0.373 4.373 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.578 5.578 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.214 1.214 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.115 0.885 46 H 0.121 0.879 47 H 0.081 0.919 48 H 0.044 0.956 49 H 0.035 0.965 50 H 0.219 0.781 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.971 0.718 23.803 24.551 hybrid contribution -0.302 0.122 -0.937 0.992 sum 5.669 0.841 22.865 23.573 Atomic orbital electron populations 1.21881 0.95016 1.01931 1.01663 1.21087 0.95910 0.99328 0.93994 0.91143 1.21996 0.94817 1.01551 0.98403 1.21708 0.94523 0.99068 0.86136 1.48177 1.43136 1.35572 1.07468 1.20484 0.78666 0.79243 0.91027 1.90751 1.57205 1.59374 1.33306 1.22698 0.97999 0.99362 0.95585 1.23047 0.95931 0.96019 1.00075 1.21831 0.95386 0.96420 0.95479 1.21601 1.01068 1.00921 0.94896 1.21716 0.93981 1.01893 1.01634 1.22965 0.95865 0.96957 0.98832 1.21702 0.93598 0.99011 0.85969 1.21704 0.94620 1.00650 0.95077 0.90876 1.20721 0.96772 0.94006 0.85424 1.42413 1.65446 1.29089 1.00800 1.19153 1.28033 1.06297 0.83831 0.91335 1.24757 1.00858 0.97531 0.97785 1.69672 1.42330 1.17174 1.28599 0.86286 0.77949 0.77635 0.84398 1.21323 1.21717 1.21359 0.92805 0.93269 0.91643 0.90980 0.91539 0.90098 0.91569 0.87303 0.89618 0.90871 0.92239 0.92396 0.92437 0.92351 0.92718 0.92437 0.91111 0.88536 0.87930 0.91875 0.95592 0.96481 0.78114 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.82 37.16 0.33 -1.43 16 2 C -0.08 -1.05 2.23 -90.57 -0.20 -1.25 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -1.30 5.36 -26.61 -0.14 -1.44 16 5 C 0.11 1.10 6.30 -3.71 -0.02 1.07 16 6 N -0.61 -8.75 2.97 -172.77 -0.51 -9.26 16 7 C 0.52 8.09 7.22 -10.98 -0.08 8.01 16 8 O -0.53 -10.97 15.32 5.56 0.09 -10.89 16 9 C -0.14 -1.48 2.38 -90.96 -0.22 -1.70 16 10 C -0.11 -1.02 6.49 -25.83 -0.17 -1.19 16 11 C -0.09 -0.77 1.39 -153.60 -0.21 -0.98 16 12 C -0.13 -0.86 9.07 37.16 0.34 -0.52 16 13 C -0.13 -1.08 9.20 37.16 0.34 -0.74 16 14 C -0.11 -1.19 6.55 -25.92 -0.17 -1.36 16 15 C 0.12 2.07 5.52 -3.71 -0.02 2.05 16 16 C -0.10 -1.68 1.92 -90.50 -0.17 -1.86 16 17 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 18 C 0.16 3.24 5.41 -4.04 -0.02 3.22 16 19 N -0.73 -19.27 5.38 -59.91 -0.32 -19.59 16 20 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -29.39 13.06 55.49 0.72 -28.66 16 24 Si 0.91 23.11 29.55 -169.99 -5.02 18.08 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.86 6.29 -51.92 -0.33 0.53 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.64 5.67 -51.93 -0.29 0.34 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.11 0.99 6.80 -51.93 -0.35 0.64 16 36 H 0.09 0.88 7.93 -51.93 -0.41 0.47 16 37 H 0.07 0.53 8.10 -51.93 -0.42 0.10 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 40 H 0.06 0.36 7.34 -51.93 -0.38 -0.02 16 41 H 0.06 0.51 7.96 -51.93 -0.41 0.10 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 45 H 0.10 1.28 7.41 -51.93 -0.38 0.90 16 46 H 0.10 2.25 6.22 -51.93 -0.32 1.93 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 48 H 0.03 0.53 6.14 -51.93 -0.32 0.21 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.38 10.88 6.90 -40.82 -0.28 10.60 16 51 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 387.79 15.07 5.84 5.84 Total: -1.00 -33.75 387.79 -9.25 -43.00 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -9.37 Total: 7.21 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.67 Total: -5.74 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: -0.11 Total: -57.51 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.75 -9.25 -43.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132793843.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.073 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds