Wall clock time and date at job start Fri Apr 10 2020 22:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53191 * 109.31132 * 181.37889 * 4 2 1 6 6 N 1.46921 * 108.77411 * 305.35957 * 5 4 2 7 7 C 1.34777 * 120.63225 * 233.58641 * 6 5 4 8 8 O 1.21282 * 119.99945 * 180.02562 * 7 6 5 9 9 C 1.50700 * 119.99997 * 0.02846 * 7 6 5 10 10 C 1.53785 * 113.61122 * 279.13404 * 9 7 6 11 11 C 1.53951 * 87.01692 * 220.04620 * 10 9 7 12 12 C 1.52996 * 113.54174 * 270.81486 * 11 10 9 13 13 C 1.53007 * 113.74334 * 139.94320 * 11 10 9 14 14 C 1.53774 * 113.61325 * 181.52694 * 9 7 6 15 15 C 1.46925 * 118.73795 * 53.61317 * 6 5 4 16 16 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 17 17 H 1.08995 * 109.49919 * 298.61631 * 16 2 1 18 18 C 1.53006 * 109.49435 * 58.68107 * 16 2 1 19 19 N 1.46495 * 109.46960 * 185.00197 * 18 16 2 20 20 C 1.36936 * 119.99962 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00154 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00066 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99844 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00115 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47385 * 60.00127 * 24 22 20 26 26 H 1.48498 * 109.47356 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47272 * 300.00100 * 24 22 20 28 28 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 30 30 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 31 31 H 1.09004 * 109.49679 * 301.32867 * 4 2 1 32 32 H 1.08994 * 109.49744 * 61.42383 * 4 2 1 33 33 H 1.09002 * 109.58035 * 185.57574 * 5 4 2 34 34 H 1.09002 * 109.58818 * 65.15445 * 5 4 2 35 35 H 1.08996 * 112.84692 * 50.33109 * 9 7 6 36 36 H 1.09002 * 113.61366 * 334.56611 * 10 9 7 37 37 H 1.09000 * 113.61116 * 105.47209 * 10 9 7 38 38 H 1.08995 * 109.47449 * 157.49867 * 12 11 10 39 39 H 1.09008 * 109.46876 * 277.49682 * 12 11 10 40 40 H 1.08998 * 109.47208 * 37.49226 * 12 11 10 41 41 H 1.08999 * 109.46604 * 322.40362 * 13 11 10 42 42 H 1.08999 * 109.46844 * 82.40284 * 13 11 10 43 43 H 1.08998 * 109.47248 * 202.40753 * 13 11 10 44 44 H 1.08997 * 113.61420 * 254.52564 * 14 9 7 45 45 H 1.08999 * 113.61633 * 25.43066 * 14 9 7 46 46 H 1.09003 * 109.59222 * 186.59958 * 15 6 5 47 47 H 1.09006 * 109.70276 * 66.24587 * 15 6 5 48 48 H 1.09001 * 109.46991 * 304.99842 * 18 16 2 49 49 H 1.09000 * 109.47170 * 64.99839 * 18 16 2 50 50 H 0.97002 * 120.00280 * 359.97438 * 19 18 16 51 51 H 0.96999 * 119.99556 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 3.5711 -0.6890 1.2645 6 7 4.0675 -1.2494 0.0004 7 6 4.9616 -2.2580 0.0005 8 8 5.3641 -2.7117 -1.0497 9 6 5.4610 -2.8220 1.3057 10 6 6.5777 -1.9848 1.9514 11 6 7.2503 -3.3179 2.3261 12 6 6.8057 -3.8666 3.6833 13 6 8.7711 -3.3093 2.1581 14 6 6.5026 -3.9404 1.1351 15 6 3.5714 -0.6891 -1.2639 16 6 2.0399 -0.7210 -1.2500 17 1 1.6971 -1.7556 -1.2385 18 6 1.5031 -0.0189 -2.4990 19 7 1.8919 -0.7773 -3.6906 20 6 1.5215 -0.3373 -4.9333 21 1 0.9424 0.5685 -5.0350 22 6 1.8904 -1.0557 -6.0624 23 7 2.5967 -2.1595 -5.9385 24 14 1.3846 -0.4559 -7.7575 25 1 1.9495 0.8973 -7.9929 26 1 1.8985 -1.3934 -8.7881 27 1 -0.0969 -0.3949 -7.8393 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.6569 -0.2207 2.1399 32 1 1.6973 -1.7556 1.2384 33 1 3.9411 -1.2850 2.0988 34 1 3.9142 0.3405 1.3677 35 1 4.6542 -3.0778 1.9925 36 1 7.1491 -1.3932 1.2361 37 1 6.2461 -1.4048 2.8127 38 1 6.9806 -4.9419 3.7155 39 1 7.3760 -3.3818 4.4757 40 1 5.7437 -3.6668 3.8257 41 1 9.0353 -2.7334 1.2711 42 1 9.2310 -2.8558 3.0361 43 1 9.1303 -4.3324 2.0472 44 1 6.1105 -4.9369 1.3383 45 1 7.0534 -3.8845 0.1962 46 1 3.9416 -1.2851 -2.0981 47 1 3.9145 0.3401 -1.3695 48 1 0.4160 0.0393 -2.4442 49 1 1.9184 0.9872 -2.5571 50 1 2.4124 -1.5908 -3.5993 51 1 2.8541 -2.6616 -6.7275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132793843.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:51 Heat of formation + Delta-G solvation = -45.900554 kcal Electronic energy + Delta-G solvation = -26789.582980 eV Core-core repulsion = 23301.994708 eV Total energy + Delta-G solvation = -3487.588272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.85486 -40.17208 -38.67372 -36.62153 -35.06044 -33.54038 -32.08906 -31.28864 -29.24784 -28.22954 -27.52767 -26.66441 -25.47359 -24.75739 -23.56018 -22.58325 -21.06096 -19.81997 -19.18756 -19.13540 -18.17786 -17.10343 -16.76814 -16.52738 -15.78644 -15.61463 -15.53192 -15.43122 -15.12539 -14.91973 -14.44151 -14.34338 -14.22223 -14.14453 -13.82438 -13.74538 -13.57441 -13.07389 -13.05525 -12.76019 -12.72200 -12.65408 -12.58637 -12.42631 -12.22625 -12.05828 -12.01761 -11.91333 -11.76382 -11.73100 -11.33693 -11.23918 -11.10839 -11.01395 -10.94940 -10.55371 -9.62002 -9.02069 -7.96061 -5.26872 1.42896 1.47671 1.53964 1.62059 2.03258 2.53836 3.36350 3.42274 3.51109 3.62488 3.67326 3.74221 3.81906 3.86467 4.00210 4.07530 4.22363 4.29283 4.34599 4.47511 4.50905 4.57512 4.60692 4.70785 4.74825 4.77276 4.79675 4.83863 4.86689 4.90339 4.95762 4.96557 4.98197 5.06822 5.09140 5.13135 5.19334 5.23207 5.23914 5.25752 5.30311 5.44721 5.46262 5.47581 5.56919 5.58271 5.64996 6.24099 6.48656 7.22767 7.29190 8.06173 8.28395 9.27282 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.003455 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.244374 B = 8101.960681 C = 9564.621914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 H 0.083 0.917 4 C -0.123 4.123 5 C 0.101 3.899 6 N -0.607 5.607 7 C 0.506 3.494 8 O -0.598 6.598 9 C -0.127 4.127 10 C -0.105 4.105 11 C -0.078 4.078 12 C -0.125 4.125 13 C -0.137 4.137 14 C -0.122 4.122 15 C 0.126 3.874 16 C -0.087 4.087 17 H 0.047 0.953 18 C 0.157 3.843 19 N -0.749 5.749 20 C -0.247 4.247 21 H 0.079 0.921 22 C -0.081 4.081 23 N -0.973 5.973 24 Si 0.979 3.021 25 H -0.275 1.275 26 H -0.297 1.297 27 H -0.274 1.274 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.113 0.887 32 H 0.058 0.942 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.141 0.859 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.045 0.955 47 H 0.066 0.934 48 H 0.034 0.966 49 H 0.022 0.978 50 H 0.369 0.631 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.793 2.670 28.456 28.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 H 0.101 0.899 4 C -0.161 4.161 5 C -0.019 4.019 6 N -0.338 5.338 7 C 0.297 3.703 8 O -0.479 6.479 9 C -0.148 4.148 10 C -0.142 4.142 11 C -0.078 4.078 12 C -0.182 4.182 13 C -0.194 4.194 14 C -0.160 4.160 15 C 0.002 3.998 16 C -0.106 4.106 17 H 0.066 0.934 18 C 0.030 3.970 19 N -0.391 5.391 20 C -0.379 4.379 21 H 0.097 0.903 22 C -0.273 4.273 23 N -0.624 5.624 24 Si 0.807 3.193 25 H -0.201 1.201 26 H -0.223 1.223 27 H -0.200 1.200 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.131 0.869 32 H 0.077 0.923 33 H 0.132 0.868 34 H 0.105 0.895 35 H 0.158 0.842 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.063 0.937 47 H 0.084 0.916 48 H 0.052 0.948 49 H 0.040 0.960 50 H 0.200 0.800 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.909 2.573 27.813 28.360 hybrid contribution 0.007 -0.405 -2.143 2.181 sum 4.916 2.168 25.670 26.226 Atomic orbital electron populations 1.21854 0.94314 1.01648 1.02392 1.21095 0.96422 0.99589 0.92667 0.89890 1.21996 0.94507 1.01243 0.98316 1.22135 0.94712 1.00599 0.84501 1.48298 1.42476 1.35079 1.07968 1.21486 0.78012 0.78826 0.92019 1.90723 1.59547 1.61528 1.36105 1.22826 0.99051 0.99542 0.93334 1.23034 0.94557 0.96252 1.00375 1.21808 0.95208 0.95391 0.95389 1.21614 1.02009 1.01056 0.93526 1.21732 0.94064 1.01874 1.01730 1.22996 0.96602 0.97647 0.98786 1.21333 0.94136 0.98014 0.86272 1.21548 0.93836 0.99379 0.95867 0.93418 1.20929 0.97154 0.93796 0.85095 1.42687 1.65270 1.29073 1.02091 1.19646 1.27021 1.06217 0.85021 0.90268 1.25695 1.01553 0.97944 1.02076 1.69880 1.44356 1.18881 1.29243 0.85136 0.78036 0.77147 0.78985 1.20145 1.22315 1.19974 0.93617 0.90033 0.93387 0.86857 0.92285 0.86827 0.89539 0.84151 0.91584 0.87443 0.92148 0.90831 0.91264 0.93993 0.90854 0.92405 0.90680 0.92118 0.93666 0.91551 0.94844 0.96038 0.79961 0.94141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.82 71.98 0.63 -2.45 16 2 C -0.08 -1.77 2.23 -10.76 -0.02 -1.80 16 3 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 4 C -0.12 -1.96 5.36 30.67 0.16 -1.80 16 5 C 0.10 1.66 6.30 86.36 0.54 2.21 16 6 N -0.61 -17.31 2.97 -818.91 -2.43 -19.74 16 7 C 0.51 16.41 7.22 87.66 0.63 17.04 16 8 O -0.60 -27.19 15.32 -3.03 -0.05 -27.24 16 9 C -0.13 -2.61 2.38 -11.01 -0.03 -2.64 16 10 C -0.10 -1.64 6.49 31.18 0.20 -1.43 16 11 C -0.08 -1.17 1.39 -51.60 -0.07 -1.24 16 12 C -0.13 -1.21 9.07 71.98 0.65 -0.55 16 13 C -0.14 -2.06 9.20 71.98 0.66 -1.39 16 14 C -0.12 -2.73 6.55 31.12 0.20 -2.53 16 15 C 0.13 4.61 5.52 86.36 0.48 5.09 16 16 C -0.09 -2.95 1.92 -10.71 -0.02 -2.97 16 17 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 18 C 0.16 6.56 5.41 86.38 0.47 7.03 16 19 N -0.75 -41.29 5.38 -343.45 -1.85 -43.14 16 20 C -0.25 -14.67 9.99 84.03 0.84 -13.83 16 21 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 22 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 23 N -0.97 -64.47 13.06 21.65 0.28 -64.19 16 24 Si 0.98 48.59 29.55 68.60 2.03 50.62 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 26 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 27 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 1.18 6.29 -2.38 -0.01 1.17 16 31 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.11 1.17 5.67 -2.39 -0.01 1.16 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.14 2.02 6.80 -2.39 -0.02 2.00 16 36 H 0.07 1.32 7.93 -2.39 -0.02 1.30 16 37 H 0.11 0.99 8.10 -2.39 -0.02 0.97 16 38 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 40 H 0.07 0.53 7.34 -2.39 -0.02 0.51 16 41 H 0.04 0.75 7.96 -2.39 -0.02 0.73 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 43 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 45 H 0.06 1.79 7.41 -2.39 -0.02 1.77 16 46 H 0.04 2.19 6.22 -2.39 -0.01 2.17 16 47 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 48 H 0.03 1.37 6.14 -2.39 -0.01 1.36 16 49 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.37 22.44 6.90 -92.71 -0.64 21.80 16 51 H 0.25 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -81.10 387.79 4.04 -77.06 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: 0.25 Total: 32.37 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 5.80 Total: -5.74 kcal Atomic # 7 Polarization: -123.07 SS G_CDS: -4.00 Total: -127.07 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.05 Total: -27.24 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.62 kcal Total: -81.10 4.04 -77.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132793843.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.164 kcal (2) G-P(sol) polarization free energy of solvation -81.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds