Wall clock time and date at job start Fri Apr 10 2020 22:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.45237 * 2 1 4 4 C 1.53040 * 109.45799 * 240.03089 * 2 1 3 5 5 C 1.53194 * 109.31487 * 301.34736 * 4 2 1 6 6 N 1.46921 * 108.77647 * 305.36461 * 5 4 2 7 7 C 1.34778 * 120.63113 * 233.58660 * 6 5 4 8 8 O 1.21284 * 119.99588 * 180.02562 * 7 6 5 9 9 C 1.50694 * 120.00088 * 0.02562 * 7 6 5 10 10 C 1.53781 * 113.61134 * 279.13661 * 9 7 6 11 11 C 1.53956 * 87.01989 * 220.04455 * 10 9 7 12 12 C 1.52998 * 113.54239 * 270.81255 * 11 10 9 13 13 C 1.53002 * 113.74222 * 139.94267 * 11 10 9 14 14 C 1.53777 * 113.61780 * 181.52956 * 9 7 6 15 15 C 1.46930 * 118.73639 * 53.60821 * 6 5 4 16 16 C 1.53044 * 109.45635 * 119.96729 * 2 1 3 17 17 H 1.09001 * 109.52097 * 178.61951 * 16 2 1 18 18 C 1.52993 * 109.49943 * 298.69851 * 16 2 1 19 19 N 1.46496 * 109.47551 * 184.83890 * 18 16 2 20 20 C 1.36934 * 120.00548 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99288 * 0.02562 * 20 19 18 22 22 C 1.38805 * 120.00389 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00257 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 H 1.09001 * 109.47097 * 300.03874 * 1 2 3 29 29 H 1.08999 * 109.47132 * 60.03434 * 1 2 3 30 30 H 1.08996 * 109.47409 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.49824 * 181.39786 * 4 2 1 32 32 H 1.09000 * 109.52180 * 61.31611 * 4 2 1 33 33 H 1.09007 * 109.58314 * 185.57533 * 5 4 2 34 34 H 1.08995 * 109.58592 * 65.15479 * 5 4 2 35 35 H 1.08997 * 112.84990 * 50.32848 * 9 7 6 36 36 H 1.08993 * 113.61656 * 334.56511 * 10 9 7 37 37 H 1.09000 * 113.61663 * 105.47377 * 10 9 7 38 38 H 1.08999 * 109.47111 * 157.48780 * 12 11 10 39 39 H 1.08996 * 109.47238 * 277.49237 * 12 11 10 40 40 H 1.09005 * 109.46584 * 37.49406 * 12 11 10 41 41 H 1.09000 * 109.47343 * 322.40758 * 13 11 10 42 42 H 1.08996 * 109.47411 * 82.40551 * 13 11 10 43 43 H 1.09005 * 109.47103 * 202.40713 * 13 11 10 44 44 H 1.08998 * 113.61618 * 254.52999 * 14 9 7 45 45 H 1.09004 * 113.60954 * 25.42877 * 14 9 7 46 46 H 1.09009 * 109.58268 * 186.60294 * 15 6 5 47 47 H 1.09001 * 109.58767 * 66.17906 * 15 6 5 48 48 H 1.09004 * 109.46862 * 64.84089 * 18 16 2 49 49 H 1.09004 * 109.46998 * 304.84566 * 18 16 2 50 50 H 0.96999 * 119.99694 * 0.02562 * 19 18 16 51 51 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 1.4994 -2.1542 -1.2642 6 7 1.8623 -2.8089 0.0000 7 6 2.5154 -3.9879 0.0000 8 8 2.8090 -4.5185 1.0504 9 6 2.8808 -4.6469 -1.3050 10 6 1.7193 -5.4208 -1.9507 11 6 2.7521 -6.4994 -2.3252 12 6 3.4176 -6.2631 -3.6825 13 6 2.2371 -7.9303 -2.1571 14 6 3.5881 -6.0016 -1.1343 15 6 1.4994 -2.1542 1.2643 16 6 2.0397 -0.7208 1.2501 17 1 3.1295 -0.7429 1.2389 18 6 1.5569 0.0193 2.4990 19 7 2.1392 -0.6023 3.6909 20 6 1.8481 -0.1061 4.9335 21 1 1.1888 0.7434 5.0349 22 6 2.4003 -0.6947 6.0628 23 7 2.1201 -0.2181 7.2573 24 14 3.5400 -2.1644 5.8874 25 1 2.7428 -3.4166 5.9286 26 1 4.2617 -2.0794 4.5924 27 1 4.5213 -2.1655 7.0020 28 1 -0.3633 0.5144 0.8896 29 1 -0.3633 0.5133 -0.8903 30 1 -0.3634 -1.0276 0.0005 31 1 3.1295 -0.7430 -1.2383 32 1 1.6962 -0.1937 -2.1401 33 1 1.9381 -2.7018 -2.0985 34 1 0.4145 -2.1347 -1.3674 35 1 3.3907 -3.9716 -1.9920 36 1 0.9712 -5.7624 -1.2354 37 1 1.2830 -4.9151 -2.8121 38 1 4.3733 -6.7863 -3.7146 39 1 2.7705 -6.6394 -4.4748 40 1 3.5831 -5.1952 -3.8249 41 1 1.6060 -7.9875 -1.2702 42 1 1.6563 -8.2129 -3.0350 43 1 3.0821 -8.6099 -2.0461 44 1 4.6584 -5.9641 -1.3375 45 1 3.3518 -6.5022 -0.1953 46 1 1.9380 -2.7019 2.0985 47 1 0.4144 -2.1347 1.3674 48 1 0.4696 -0.0345 2.5556 49 1 1.8666 1.0631 2.4453 50 1 2.7315 -1.3649 3.5998 51 1 2.5057 -0.6297 8.0464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132793844.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:54 Heat of formation + Delta-G solvation = -18.702820 kcal Electronic energy + Delta-G solvation = -27077.750406 eV Core-core repulsion = 23591.341517 eV Total energy + Delta-G solvation = -3486.408890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.99291 -39.43160 -37.63054 -35.09765 -33.56256 -31.96166 -31.21687 -30.17840 -27.78271 -27.74795 -26.31576 -25.91242 -24.97842 -23.30556 -22.81837 -21.09237 -19.60361 -18.52149 -18.22872 -17.52903 -17.17672 -16.02988 -15.62317 -15.18142 -14.99569 -14.81652 -14.40527 -14.36039 -13.96860 -13.78220 -13.64382 -13.25103 -13.10097 -12.91865 -12.85899 -12.66492 -12.49163 -12.19679 -12.00450 -11.81706 -11.72390 -11.55341 -11.35578 -11.17389 -11.10643 -11.01616 -10.80690 -10.66663 -10.56274 -10.38192 -10.32681 -10.12973 -10.00416 -9.54427 -9.48436 -8.83225 -8.49431 -7.16923 -5.71508 -3.06745 2.66717 3.03361 3.47304 3.52382 3.55768 4.12108 4.25258 4.34335 4.44291 4.58762 4.66867 4.69787 4.79218 4.83766 4.94374 5.09378 5.12208 5.20996 5.28970 5.31540 5.32997 5.41663 5.48276 5.52426 5.55138 5.55975 5.60625 5.62561 5.64906 5.69168 5.70190 5.78657 5.81439 5.83509 5.89525 5.92413 6.01274 6.07793 6.22046 6.23264 6.26158 6.29313 6.44725 6.58313 6.70123 6.81037 7.47936 8.04328 8.26968 8.47676 9.26944 9.99979 10.19338 11.46801 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.014792 B = 0.003996 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.487525 B = 7004.585722 C = 8502.586061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 H 0.075 0.925 4 C -0.130 4.130 5 C 0.108 3.892 6 N -0.609 5.609 7 C 0.519 3.481 8 O -0.537 6.537 9 C -0.136 4.136 10 C -0.113 4.113 11 C -0.090 4.090 12 C -0.128 4.128 13 C -0.135 4.135 14 C -0.109 4.109 15 C 0.117 3.883 16 C -0.106 4.106 17 H 0.072 0.928 18 C 0.165 3.835 19 N -0.757 5.757 20 C -0.244 4.244 21 H 0.090 0.910 22 C 0.006 3.994 23 N -0.935 5.935 24 Si 0.882 3.118 25 H -0.282 1.282 26 H -0.277 1.277 27 H -0.291 1.291 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.071 0.929 48 H 0.031 0.969 49 H 0.029 0.971 50 H 0.362 0.638 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.085 -8.850 -27.893 29.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 H 0.093 0.907 4 C -0.168 4.168 5 C -0.016 4.016 6 N -0.342 5.342 7 C 0.307 3.693 8 O -0.413 6.413 9 C -0.157 4.157 10 C -0.151 4.151 11 C -0.091 4.091 12 C -0.185 4.185 13 C -0.192 4.192 14 C -0.146 4.146 15 C -0.005 4.005 16 C -0.126 4.126 17 H 0.090 0.910 18 C 0.037 3.963 19 N -0.403 5.403 20 C -0.373 4.373 21 H 0.108 0.892 22 C -0.190 4.190 23 N -0.583 5.583 24 Si 0.712 3.288 25 H -0.209 1.209 26 H -0.203 1.203 27 H -0.217 1.217 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.128 0.872 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.114 0.886 46 H 0.112 0.888 47 H 0.089 0.911 48 H 0.049 0.951 49 H 0.047 0.953 50 H 0.195 0.805 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.032 -8.997 -27.137 28.608 hybrid contribution 0.872 -0.807 0.034 1.188 sum -0.161 -9.803 -27.104 28.822 Atomic orbital electron populations 1.21992 0.95080 1.02009 1.01974 1.21050 0.96133 0.99403 0.93685 0.90687 1.21959 1.01107 0.95228 0.98522 1.21757 1.00357 0.93541 0.85899 1.48172 1.57474 1.21050 1.07526 1.20514 0.77199 0.80503 0.91070 1.90723 1.53780 1.63365 1.33437 1.22703 1.00235 0.97252 0.95480 1.23049 0.95603 0.96290 1.00113 1.21826 0.96689 0.95078 0.95460 1.21604 1.00349 1.01678 0.94883 1.21717 1.00878 0.94977 1.01676 1.22968 0.98970 0.93835 0.98875 1.21729 1.00088 0.92835 0.85826 1.21738 1.00796 0.94549 0.95499 0.90959 1.20663 0.96370 0.94908 0.84340 1.42786 1.57486 1.37448 1.02581 1.19039 1.24202 1.12243 0.81853 0.89226 1.24646 1.00188 0.99043 0.95112 1.69707 1.48453 1.43166 0.96998 0.86592 0.81375 0.83927 0.76935 1.20878 1.20315 1.21734 0.91639 0.93043 0.92450 0.91596 0.90792 0.90116 0.91106 0.87206 0.89606 0.90779 0.92223 0.92325 0.92432 0.92369 0.92644 0.92426 0.91105 0.88597 0.88769 0.91110 0.95079 0.95341 0.80530 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.11 37.16 0.30 -1.33 16 2 C -0.08 -0.97 2.71 -90.58 -0.25 -1.21 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.13 -1.19 5.62 -26.61 -0.15 -1.34 16 5 C 0.11 0.99 5.84 -3.71 -0.02 0.96 16 6 N -0.61 -8.06 2.97 -172.77 -0.51 -8.58 16 7 C 0.52 7.56 7.22 -10.99 -0.08 7.48 16 8 O -0.54 -10.40 15.32 5.55 0.09 -10.32 16 9 C -0.14 -1.37 2.38 -90.96 -0.22 -1.58 16 10 C -0.11 -0.93 6.49 -25.83 -0.17 -1.10 16 11 C -0.09 -0.70 1.39 -153.60 -0.21 -0.92 16 12 C -0.13 -0.79 9.07 37.16 0.34 -0.45 16 13 C -0.14 -1.01 9.20 37.16 0.34 -0.67 16 14 C -0.11 -1.11 6.55 -25.92 -0.17 -1.28 16 15 C 0.12 1.88 5.05 -3.71 -0.02 1.86 16 16 C -0.11 -1.65 2.15 -90.50 -0.19 -1.85 16 17 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 18 C 0.16 3.20 5.19 -4.05 -0.02 3.18 16 19 N -0.76 -18.75 5.18 -59.91 -0.31 -19.06 16 20 C -0.24 -7.13 10.47 -15.06 -0.16 -7.28 16 21 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 22 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 23 N -0.94 -30.27 13.97 55.49 0.78 -29.50 16 24 Si 0.88 23.68 27.74 -169.99 -4.71 18.96 16 25 H -0.28 -7.62 7.11 56.52 0.40 -7.22 16 26 H -0.28 -7.20 6.52 56.52 0.37 -6.84 16 27 H -0.29 -7.81 7.11 56.52 0.40 -7.40 16 28 H 0.06 0.78 6.57 -51.93 -0.34 0.44 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.61 4.98 -51.93 -0.26 0.36 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.57 5.67 -51.93 -0.29 0.28 16 34 H 0.07 0.59 6.69 -51.93 -0.35 0.25 16 35 H 0.11 0.91 6.80 -51.93 -0.35 0.55 16 36 H 0.09 0.82 7.93 -51.93 -0.41 0.41 16 37 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.06 0.33 7.34 -51.93 -0.38 -0.05 16 41 H 0.06 0.48 7.96 -51.93 -0.41 0.06 16 42 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.68 8.10 -51.93 -0.42 0.25 16 45 H 0.10 1.19 7.41 -51.93 -0.38 0.81 16 46 H 0.09 1.89 6.21 -51.92 -0.32 1.56 16 47 H 0.07 1.10 6.69 -51.93 -0.35 0.75 16 48 H 0.03 0.60 6.72 -51.93 -0.35 0.25 16 49 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.36 9.05 4.75 -40.82 -0.19 8.86 16 51 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 LS Contribution 378.57 15.07 5.70 5.70 Total: -1.00 -34.56 378.57 -8.80 -43.37 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -9.06 Total: 4.87 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -0.77 Total: -5.45 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.05 Total: -57.13 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -4.71 Total: 18.96 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.56 -8.80 -43.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132793844.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.665 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds