Wall clock time and date at job start Fri Apr 10 2020 22:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50699 * 119.99996 * 2 1 4 4 C 1.30994 * 119.99927 * 180.02562 * 2 1 3 5 5 C 1.50705 * 120.00043 * 174.41105 * 4 2 1 6 6 C 1.50698 * 120.00261 * 354.41292 * 4 2 1 7 7 C 1.50700 * 109.47326 * 94.99709 * 6 4 2 8 8 O 1.21275 * 119.99909 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99847 * 179.97438 * 7 6 4 10 10 C 1.47201 * 120.81583 * 0.14940 * 9 7 6 11 11 C 1.53190 * 108.85951 * 126.33225 * 10 9 7 12 12 C 1.53038 * 109.30959 * 54.65039 * 11 10 9 13 13 H 1.08999 * 109.46414 * 178.61810 * 12 11 10 14 14 C 1.53002 * 109.45151 * 58.64783 * 12 11 10 15 15 C 1.53047 * 109.54040 * 298.63489 * 12 11 10 16 16 H 1.08994 * 109.49557 * 301.41803 * 15 12 11 17 17 C 1.52999 * 109.49792 * 181.31485 * 15 12 11 18 18 N 1.46508 * 109.46865 * 175.16330 * 17 15 12 19 19 C 1.36936 * 119.99716 * 180.02562 * 18 17 15 20 20 H 1.07992 * 119.99924 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99612 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00114 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99972 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47084 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47005 * 120.00106 * 23 21 19 26 26 H 1.48504 * 109.47323 * 240.00338 * 23 21 19 27 27 C 1.46924 * 120.62947 * 179.97438 * 9 7 6 28 28 H 1.09007 * 109.46870 * 270.00247 * 1 2 3 29 29 H 1.08999 * 109.46965 * 29.99541 * 1 2 3 30 30 H 1.08993 * 109.47306 * 150.00250 * 1 2 3 31 31 H 1.09000 * 109.47247 * 244.84449 * 3 2 1 32 32 H 1.09007 * 109.47231 * 4.84547 * 3 2 1 33 33 H 1.08998 * 109.47554 * 124.84541 * 3 2 1 34 34 H 1.09005 * 109.46875 * 275.29793 * 5 4 2 35 35 H 1.09003 * 109.47069 * 35.29429 * 5 4 2 36 36 H 1.08993 * 109.47042 * 155.29842 * 5 4 2 37 37 H 1.09000 * 109.46682 * 334.99625 * 6 4 2 38 38 H 1.09007 * 109.47111 * 215.00041 * 6 4 2 39 39 H 1.09000 * 109.53264 * 6.52891 * 10 9 7 40 40 H 1.09000 * 109.56161 * 246.15791 * 10 9 7 41 41 H 1.09004 * 109.49779 * 294.70565 * 11 10 9 42 42 H 1.08997 * 109.50097 * 174.60241 * 11 10 9 43 43 H 1.08992 * 109.46993 * 299.94100 * 14 12 11 44 44 H 1.09000 * 109.46736 * 59.93973 * 14 12 11 45 45 H 1.08997 * 109.47263 * 179.97438 * 14 12 11 46 46 H 1.09001 * 109.47206 * 295.16252 * 17 15 12 47 47 H 1.08995 * 109.46867 * 55.16569 * 17 15 12 48 48 H 0.96996 * 119.99971 * 0.02562 * 18 17 15 49 49 H 0.97002 * 119.99995 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.58736 * 113.82159 * 27 9 7 51 51 H 1.08998 * 109.58451 * 353.54278 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1619 -1.1344 -0.0005 5 6 3.6636 -1.1375 -0.1276 6 6 1.4139 -2.4365 0.1260 7 6 1.1521 -3.0009 -1.2466 8 8 1.5356 -2.4047 -2.2306 9 7 0.4926 -4.1687 -1.3805 10 6 0.0172 -4.9061 -0.1986 11 6 -1.4804 -5.1861 -0.3589 12 6 -1.7210 -5.9076 -1.6868 13 1 -2.7828 -6.1299 -1.7922 14 6 -0.9223 -7.2124 -1.7098 15 6 -1.2702 -5.0134 -2.8443 16 1 -1.8211 -4.0735 -2.8137 17 6 -1.5414 -5.7222 -4.1728 18 7 -1.2174 -4.8214 -5.2818 19 6 -1.3822 -5.2408 -6.5749 20 1 -1.7513 -6.2353 -6.7772 21 6 -1.0757 -4.3872 -7.6258 22 7 -0.6263 -3.1749 -7.3792 23 14 -1.2998 -4.9594 -9.3898 24 1 -1.8136 -6.3527 -9.3967 25 1 -2.2700 -4.0711 -10.0789 26 1 0.0056 -4.9092 -10.0961 27 6 0.2293 -4.7312 -2.7120 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 2.8205 1.4013 -0.9302 32 1 1.5553 2.1318 0.0868 33 1 2.9507 1.3262 0.8434 34 1 3.9391 -1.0929 -1.1813 35 1 4.0740 -0.2718 0.3922 36 1 4.0637 -2.0500 0.3142 37 1 0.4655 -2.2627 0.6343 38 1 2.0106 -3.1439 0.7020 39 1 0.1830 -4.3062 0.6963 40 1 0.5582 -5.8486 -0.1145 41 1 -2.0293 -4.2444 -0.3518 42 1 -1.8232 -5.8138 0.4636 43 1 0.1396 -6.9902 -1.6051 44 1 -1.2433 -7.8493 -0.8856 45 1 -1.0938 -7.7268 -2.6553 46 1 -0.9235 -6.6177 -4.2396 47 1 -2.5934 -6.0018 -4.2272 48 1 -0.8862 -3.9281 -5.1002 49 1 -0.4118 -2.5785 -8.1136 50 1 0.7877 -5.6595 -2.8334 51 1 0.5356 -4.0179 -3.4772 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133043488.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:26 Heat of formation + Delta-G solvation = -29.190385 kcal Electronic energy + Delta-G solvation = -26899.538153 eV Core-core repulsion = 23412.674488 eV Total energy + Delta-G solvation = -3486.863665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.35993 -38.45244 -36.82537 -34.88451 -33.44373 -31.88477 -31.13125 -29.94605 -29.44841 -27.64639 -26.78754 -25.28055 -24.63955 -23.59424 -23.07523 -21.15323 -19.75451 -18.09573 -17.24353 -16.99273 -16.71048 -15.81111 -15.58003 -15.00263 -14.92133 -14.61729 -14.41996 -14.18467 -14.06191 -13.51272 -13.31017 -13.16399 -12.93731 -12.76794 -12.65970 -12.43066 -12.36176 -12.16282 -12.02472 -11.91695 -11.77597 -11.58917 -11.34146 -11.18542 -11.04008 -10.89651 -10.78822 -10.71370 -10.57474 -10.23423 -10.13450 -9.89318 -9.61095 -9.50573 -8.81131 -8.44544 -8.34744 -6.84098 -5.67716 -2.97375 2.07457 2.86845 3.23935 3.48159 3.52933 3.55853 4.60843 4.62043 4.69987 4.74675 4.84002 4.90026 4.98831 5.03497 5.21949 5.25462 5.30530 5.33843 5.38536 5.43901 5.49367 5.59839 5.61541 5.65093 5.67017 5.69754 5.72721 5.83100 5.84962 5.88812 5.90749 5.93832 5.97170 6.00089 6.04710 6.09204 6.21239 6.35816 6.38390 6.40987 6.61263 6.64212 6.75537 6.82994 6.94201 6.98268 7.62863 7.76764 8.44643 8.49940 9.60945 10.19539 10.53650 11.54647 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.012076 B = 0.003946 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.185817 B = 7094.541875 C = 8739.682032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.127 4.127 3 C -0.112 4.112 4 C -0.117 4.117 5 C -0.112 4.112 6 C -0.102 4.102 7 C 0.511 3.489 8 O -0.522 6.522 9 N -0.614 5.614 10 C 0.106 3.894 11 C -0.129 4.129 12 C -0.085 4.085 13 H 0.072 0.928 14 C -0.153 4.153 15 C -0.101 4.101 16 H 0.072 0.928 17 C 0.161 3.839 18 N -0.733 5.733 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.929 5.929 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.120 3.880 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.049 0.951 45 H 0.063 0.937 46 H 0.022 0.978 47 H 0.020 0.980 48 H 0.385 0.615 49 H 0.254 0.746 50 H 0.065 0.935 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 0.087 23.299 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.127 4.127 3 C -0.169 4.169 4 C -0.118 4.118 5 C -0.168 4.168 6 C -0.142 4.142 7 C 0.298 3.702 8 O -0.397 6.397 9 N -0.349 5.349 10 C -0.017 4.017 11 C -0.167 4.167 12 C -0.104 4.104 13 H 0.091 0.909 14 C -0.210 4.210 15 C -0.121 4.121 16 H 0.090 0.910 17 C 0.033 3.967 18 N -0.378 5.378 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.577 5.577 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.002 4.002 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.040 0.960 47 H 0.037 0.963 48 H 0.219 0.781 49 H 0.064 0.936 50 H 0.084 0.916 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.285 0.315 22.613 22.852 hybrid contribution -0.168 -0.111 -0.967 0.988 sum 3.117 0.204 21.646 21.870 Atomic orbital electron populations 1.20852 0.92442 1.02823 1.01251 1.21340 0.95520 0.94596 1.01291 1.20782 0.99666 0.94598 1.01840 1.20790 0.95599 0.92720 1.02673 1.20777 0.91980 1.01573 1.02487 1.20803 1.01629 0.96247 0.95537 1.20564 0.78007 0.80274 0.91319 1.90767 1.50293 1.58535 1.40096 1.48277 1.56679 1.22250 1.07689 1.21790 0.95138 0.96871 0.87918 1.21940 0.95691 1.01013 0.98073 1.21068 1.00242 0.95153 0.93907 0.90921 1.21983 1.00330 0.96703 1.01941 1.21668 0.95773 0.99279 0.95381 0.90967 1.20677 0.97205 0.93102 0.85749 1.42434 1.79286 1.15008 1.01058 1.19244 1.36702 0.98170 0.83089 0.91219 1.24752 1.02124 0.96199 0.97844 1.69690 1.50661 1.06849 1.30545 0.86151 0.77237 0.77598 0.85408 1.20602 1.21926 1.21889 1.21687 0.95446 0.99434 0.83616 0.91888 0.91741 0.91931 0.91512 0.92304 0.91794 0.90910 0.91904 0.92639 0.88572 0.88830 0.90317 0.91181 0.91569 0.90926 0.92437 0.93191 0.91812 0.95994 0.96258 0.78108 0.93560 0.91639 0.88067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 8.94 36.01 0.32 -0.98 16 2 C -0.13 -1.50 6.04 -101.07 -0.61 -2.12 16 3 C -0.11 -1.12 8.81 36.00 0.32 -0.80 16 4 C -0.12 -1.42 4.54 -101.06 -0.46 -1.88 16 5 C -0.11 -1.23 9.54 36.01 0.34 -0.89 16 6 C -0.10 -1.15 3.51 -29.04 -0.10 -1.25 16 7 C 0.51 7.93 7.24 -10.98 -0.08 7.85 16 8 O -0.52 -10.75 15.45 5.56 0.09 -10.67 16 9 N -0.61 -8.68 2.99 -172.57 -0.52 -9.20 16 10 C 0.11 1.04 5.88 -3.56 -0.02 1.02 16 11 C -0.13 -1.27 5.63 -26.61 -0.15 -1.42 16 12 C -0.08 -1.04 2.71 -90.57 -0.25 -1.29 16 13 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 14 C -0.15 -1.72 8.11 37.16 0.30 -1.42 16 15 C -0.10 -1.68 2.15 -90.52 -0.19 -1.87 16 16 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 17 C 0.16 3.27 5.19 -4.04 -0.02 3.25 16 18 N -0.73 -19.25 5.38 -59.91 -0.32 -19.57 16 19 C -0.24 -6.95 9.99 -15.06 -0.15 -7.11 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -29.40 13.06 55.49 0.72 -28.67 16 23 Si 0.90 23.08 29.55 -169.99 -5.02 18.06 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 27 C 0.12 2.06 5.04 -3.73 -0.02 2.05 16 28 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 30 H 0.06 0.80 6.36 -51.93 -0.33 0.47 16 31 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 32 H 0.06 0.52 7.98 -51.92 -0.41 0.11 16 33 H 0.06 0.54 7.30 -51.93 -0.38 0.16 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.58 6.51 -51.93 -0.34 0.24 16 36 H 0.05 0.54 8.03 -51.93 -0.42 0.12 16 37 H 0.10 0.91 6.09 -51.93 -0.32 0.60 16 38 H 0.09 0.83 7.88 -51.93 -0.41 0.42 16 39 H 0.08 0.59 5.97 -51.93 -0.31 0.28 16 40 H 0.07 0.63 6.69 -51.93 -0.35 0.28 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.66 4.98 -51.93 -0.26 0.40 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 46 H 0.02 0.45 6.72 -51.93 -0.35 0.10 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.38 10.87 6.89 -40.82 -0.28 10.59 16 49 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 50 H 0.07 1.10 6.69 -51.93 -0.35 0.75 16 51 H 0.10 2.22 6.20 -51.93 -0.32 1.89 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -34.32 384.92 -9.04 -43.36 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -8.93 Total: 8.22 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -0.86 Total: -7.33 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.11 Total: -57.44 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.32 -9.04 -43.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133043488.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.174 kcal (2) G-P(sol) polarization free energy of solvation -34.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds