Wall clock time and date at job start Fri Apr 10 2020 22:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50699 * 119.99996 * 2 1 4 4 C 1.30994 * 119.99927 * 180.02562 * 2 1 3 5 5 C 1.50705 * 120.00043 * 174.41105 * 4 2 1 6 6 C 1.50698 * 120.00261 * 354.41292 * 4 2 1 7 7 C 1.50700 * 109.47326 * 94.99709 * 6 4 2 8 8 O 1.21275 * 119.99909 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99847 * 179.97438 * 7 6 4 10 10 C 1.47201 * 120.81583 * 0.14940 * 9 7 6 11 11 C 1.53190 * 108.85951 * 126.33225 * 10 9 7 12 12 C 1.53038 * 109.30959 * 54.65039 * 11 10 9 13 13 H 1.08999 * 109.46414 * 178.61810 * 12 11 10 14 14 C 1.53002 * 109.45151 * 58.64783 * 12 11 10 15 15 C 1.53047 * 109.54040 * 298.63489 * 12 11 10 16 16 H 1.08994 * 109.49557 * 301.41803 * 15 12 11 17 17 C 1.52999 * 109.49792 * 181.31485 * 15 12 11 18 18 N 1.46508 * 109.46865 * 175.16330 * 17 15 12 19 19 C 1.36936 * 119.99716 * 180.02562 * 18 17 15 20 20 H 1.07992 * 119.99924 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99612 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00114 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99972 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47084 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47005 * 120.00106 * 23 21 19 26 26 H 1.48504 * 109.47323 * 240.00338 * 23 21 19 27 27 C 1.46924 * 120.62947 * 179.97438 * 9 7 6 28 28 H 1.09007 * 109.46870 * 270.00247 * 1 2 3 29 29 H 1.08999 * 109.46965 * 29.99541 * 1 2 3 30 30 H 1.08993 * 109.47306 * 150.00250 * 1 2 3 31 31 H 1.09000 * 109.47247 * 244.84449 * 3 2 1 32 32 H 1.09007 * 109.47231 * 4.84547 * 3 2 1 33 33 H 1.08998 * 109.47554 * 124.84541 * 3 2 1 34 34 H 1.09005 * 109.46875 * 275.29793 * 5 4 2 35 35 H 1.09003 * 109.47069 * 35.29429 * 5 4 2 36 36 H 1.08993 * 109.47042 * 155.29842 * 5 4 2 37 37 H 1.09000 * 109.46682 * 334.99625 * 6 4 2 38 38 H 1.09007 * 109.47111 * 215.00041 * 6 4 2 39 39 H 1.09000 * 109.53264 * 6.52891 * 10 9 7 40 40 H 1.09000 * 109.56161 * 246.15791 * 10 9 7 41 41 H 1.09004 * 109.49779 * 294.70565 * 11 10 9 42 42 H 1.08997 * 109.50097 * 174.60241 * 11 10 9 43 43 H 1.08992 * 109.46993 * 299.94100 * 14 12 11 44 44 H 1.09000 * 109.46736 * 59.93973 * 14 12 11 45 45 H 1.08997 * 109.47263 * 179.97438 * 14 12 11 46 46 H 1.09001 * 109.47206 * 295.16252 * 17 15 12 47 47 H 1.08995 * 109.46867 * 55.16569 * 17 15 12 48 48 H 0.96996 * 119.99971 * 0.02562 * 18 17 15 49 49 H 0.97002 * 119.99995 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.58736 * 113.82159 * 27 9 7 51 51 H 1.08998 * 109.58451 * 353.54278 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1619 -1.1344 -0.0005 5 6 3.6636 -1.1375 -0.1276 6 6 1.4139 -2.4365 0.1260 7 6 1.1521 -3.0009 -1.2466 8 8 1.5356 -2.4047 -2.2306 9 7 0.4926 -4.1687 -1.3805 10 6 0.0172 -4.9061 -0.1986 11 6 -1.4804 -5.1861 -0.3589 12 6 -1.7210 -5.9076 -1.6868 13 1 -2.7828 -6.1299 -1.7922 14 6 -0.9223 -7.2124 -1.7098 15 6 -1.2702 -5.0134 -2.8443 16 1 -1.8211 -4.0735 -2.8137 17 6 -1.5414 -5.7222 -4.1728 18 7 -1.2174 -4.8214 -5.2818 19 6 -1.3822 -5.2408 -6.5749 20 1 -1.7513 -6.2353 -6.7772 21 6 -1.0757 -4.3872 -7.6258 22 7 -0.6263 -3.1749 -7.3792 23 14 -1.2998 -4.9594 -9.3898 24 1 -1.8136 -6.3527 -9.3967 25 1 -2.2700 -4.0711 -10.0789 26 1 0.0056 -4.9092 -10.0961 27 6 0.2293 -4.7312 -2.7120 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 2.8205 1.4013 -0.9302 32 1 1.5553 2.1318 0.0868 33 1 2.9507 1.3262 0.8434 34 1 3.9391 -1.0929 -1.1813 35 1 4.0740 -0.2718 0.3922 36 1 4.0637 -2.0500 0.3142 37 1 0.4655 -2.2627 0.6343 38 1 2.0106 -3.1439 0.7020 39 1 0.1830 -4.3062 0.6963 40 1 0.5582 -5.8486 -0.1145 41 1 -2.0293 -4.2444 -0.3518 42 1 -1.8232 -5.8138 0.4636 43 1 0.1396 -6.9902 -1.6051 44 1 -1.2433 -7.8493 -0.8856 45 1 -1.0938 -7.7268 -2.6553 46 1 -0.9235 -6.6177 -4.2396 47 1 -2.5934 -6.0018 -4.2272 48 1 -0.8862 -3.9281 -5.1002 49 1 -0.4118 -2.5785 -8.1136 50 1 0.7877 -5.6595 -2.8334 51 1 0.5356 -4.0179 -3.4772 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133043488.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:25 Heat of formation + Delta-G solvation = -50.664124 kcal Electronic energy + Delta-G solvation = -26900.469324 eV Core-core repulsion = 23412.674488 eV Total energy + Delta-G solvation = -3487.794836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.51905 -39.59294 -37.85254 -36.62503 -34.86744 -33.49330 -32.19639 -31.41021 -30.45300 -28.69693 -27.90767 -26.76599 -25.70127 -24.91077 -24.47525 -22.56095 -20.99815 -19.41360 -18.91559 -18.22011 -17.80879 -16.86508 -16.80455 -16.66520 -16.10873 -15.72704 -15.58015 -15.45354 -15.20876 -15.00410 -14.70730 -14.50206 -14.16990 -14.07045 -13.77615 -13.61965 -13.20886 -13.07911 -13.05013 -12.94167 -12.90518 -12.85059 -12.66700 -12.59096 -12.43007 -12.16101 -12.11244 -11.99491 -11.92185 -11.71178 -11.59658 -11.34428 -11.20698 -10.95920 -10.79191 -9.53537 -9.34853 -9.02798 -7.96586 -5.27339 1.14922 1.43189 1.45555 1.55684 1.69401 2.14489 2.53508 3.36469 3.61330 3.71545 3.82196 3.85256 3.89460 4.01408 4.11203 4.18943 4.23840 4.31961 4.38939 4.43073 4.52329 4.55187 4.58590 4.63056 4.70300 4.74875 4.77186 4.79245 4.83510 4.85424 4.93210 4.98607 5.00722 5.05332 5.07687 5.10364 5.13495 5.19859 5.20825 5.26253 5.31145 5.41894 5.46643 5.57073 5.61805 5.76763 6.10312 6.23941 6.51554 7.27631 7.29145 8.05875 8.28081 9.27228 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.012076 B = 0.003946 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.185817 B = 7094.541875 C = 8739.682032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.138 4.138 3 C -0.112 4.112 4 C -0.137 4.137 5 C -0.110 4.110 6 C -0.092 4.092 7 C 0.503 3.497 8 O -0.588 6.588 9 N -0.611 5.611 10 C 0.098 3.902 11 C -0.123 4.123 12 C -0.080 4.080 13 H 0.078 0.922 14 C -0.149 4.149 15 C -0.089 4.089 16 H 0.046 0.954 17 C 0.159 3.841 18 N -0.749 5.749 19 C -0.245 4.245 20 H 0.080 0.920 21 C -0.080 4.080 22 N -0.973 5.973 23 Si 0.977 3.023 24 H -0.261 1.261 25 H -0.292 1.292 26 H -0.294 1.294 27 C 0.130 3.870 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.113 0.887 43 H 0.055 0.945 44 H 0.082 0.918 45 H 0.045 0.955 46 H 0.029 0.971 47 H 0.023 0.977 48 H 0.369 0.631 49 H 0.250 0.750 50 H 0.068 0.932 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.418 -1.734 26.535 26.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.138 4.138 3 C -0.169 4.169 4 C -0.138 4.138 5 C -0.166 4.166 6 C -0.131 4.131 7 C 0.292 3.708 8 O -0.467 6.467 9 N -0.344 5.344 10 C -0.023 4.023 11 C -0.161 4.161 12 C -0.099 4.099 13 H 0.096 0.904 14 C -0.205 4.205 15 C -0.108 4.108 16 H 0.065 0.935 17 C 0.033 3.967 18 N -0.391 5.391 19 C -0.377 4.377 20 H 0.097 0.903 21 C -0.272 4.272 22 N -0.624 5.624 23 Si 0.806 3.194 24 H -0.185 1.185 25 H -0.220 1.220 26 H -0.221 1.221 27 C 0.007 3.993 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.131 0.869 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.131 0.869 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.064 0.936 46 H 0.047 0.953 47 H 0.041 0.959 48 H 0.201 0.799 49 H 0.059 0.941 50 H 0.086 0.914 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.568 -1.581 25.915 26.090 hybrid contribution 0.015 0.424 -1.932 1.979 sum 2.583 -1.157 23.983 24.149 Atomic orbital electron populations 1.20860 0.92195 1.01622 1.02623 1.21669 0.96040 0.95407 1.00662 1.20810 1.00009 0.94135 1.01932 1.21042 0.96204 0.93304 1.03241 1.20759 0.91804 1.03185 1.00864 1.20852 1.03222 0.96298 0.92726 1.21472 0.76888 0.79946 0.92447 1.90744 1.53015 1.60402 1.42579 1.48382 1.56076 1.22207 1.07729 1.22217 0.95282 0.97845 0.86936 1.21946 0.95542 1.01137 0.97448 1.21073 1.00591 0.94969 0.93268 0.90358 1.21951 1.00050 0.96197 1.02349 1.21519 0.95031 0.98801 0.95475 0.93499 1.20876 0.97105 0.92696 0.86057 1.42706 1.79246 1.15182 1.01997 1.19717 1.35255 0.98365 0.84366 0.90252 1.25671 1.02686 0.96380 1.02418 1.69888 1.52656 1.08349 1.31515 0.85021 0.76792 0.77939 0.79697 1.18500 1.21951 1.22128 1.21279 0.95790 0.97843 0.84433 0.89102 0.92110 0.93971 0.92863 0.91372 0.89849 0.93898 0.90131 0.91235 0.86280 0.85622 0.86893 0.89290 0.92207 0.86924 0.92624 0.89954 0.93591 0.95278 0.95928 0.79926 0.94145 0.91355 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 8.94 71.24 0.64 -1.87 16 2 C -0.14 -3.16 6.04 -16.48 -0.10 -3.26 16 3 C -0.11 -2.15 8.81 71.24 0.63 -1.52 16 4 C -0.14 -3.22 4.54 -16.48 -0.07 -3.29 16 5 C -0.11 -2.37 9.54 71.24 0.68 -1.69 16 6 C -0.09 -1.87 3.51 29.10 0.10 -1.77 16 7 C 0.50 15.82 7.24 87.66 0.64 16.45 16 8 O -0.59 -26.01 15.45 -3.01 -0.05 -26.06 16 9 N -0.61 -17.01 2.99 -818.29 -2.44 -19.45 16 10 C 0.10 1.57 5.88 86.31 0.51 2.08 16 11 C -0.12 -1.94 5.63 30.67 0.17 -1.76 16 12 C -0.08 -1.79 2.71 -10.76 -0.03 -1.82 16 13 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 14 C -0.15 -2.92 8.11 71.98 0.58 -2.34 16 15 C -0.09 -3.00 2.15 -10.73 -0.02 -3.02 16 16 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 17 C 0.16 6.65 5.19 86.38 0.45 7.10 16 18 N -0.75 -41.18 5.38 -343.45 -1.85 -43.02 16 19 C -0.25 -14.52 9.99 84.03 0.84 -13.68 16 20 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 21 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 22 N -0.97 -64.40 13.06 21.65 0.28 -64.12 16 23 Si 0.98 48.51 29.55 68.60 2.03 50.54 16 24 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 26 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 27 C 0.13 4.68 5.04 86.35 0.44 5.12 16 28 H 0.09 1.40 8.14 -2.38 -0.02 1.39 16 29 H 0.06 1.32 8.09 -2.39 -0.02 1.31 16 30 H 0.04 1.07 6.36 -2.39 -0.02 1.05 16 31 H 0.05 1.16 8.12 -2.39 -0.02 1.14 16 32 H 0.07 1.15 7.98 -2.38 -0.02 1.13 16 33 H 0.08 1.25 7.30 -2.39 -0.02 1.23 16 34 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.08 1.39 6.51 -2.39 -0.02 1.37 16 36 H 0.07 1.26 8.03 -2.39 -0.02 1.24 16 37 H 0.12 1.88 6.09 -2.39 -0.01 1.86 16 38 H 0.13 1.75 7.88 -2.38 -0.02 1.73 16 39 H 0.11 1.10 5.97 -2.39 -0.01 1.09 16 40 H 0.09 1.18 6.69 -2.39 -0.02 1.16 16 41 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.05 1.12 4.98 -2.39 -0.01 1.11 16 44 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.04 1.07 6.57 -2.39 -0.02 1.05 16 46 H 0.03 1.19 6.72 -2.39 -0.02 1.18 16 47 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.37 22.39 6.89 -92.71 -0.64 21.75 16 49 H 0.25 15.96 8.31 -92.71 -0.77 15.19 16 50 H 0.07 2.37 6.69 -2.39 -0.02 2.35 16 51 H 0.04 2.07 6.20 -2.39 -0.01 2.06 16 Total: -1.00 -81.32 384.92 4.15 -77.16 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: 0.27 Total: 34.63 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 5.91 Total: -9.68 kcal Atomic # 7 Polarization: -122.59 SS G_CDS: -4.01 Total: -126.59 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.54 kcal Total: -81.32 4.15 -77.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133043488.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.500 kcal (2) G-P(sol) polarization free energy of solvation -81.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds