Wall clock time and date at job start Fri Apr 10 2020 22:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50701 * 119.99782 * 2 1 4 4 C 1.30992 * 119.99991 * 180.02562 * 2 1 3 5 5 C 1.50709 * 119.99927 * 183.75403 * 4 2 1 6 6 C 1.50704 * 120.00461 * 3.74650 * 4 2 1 7 7 C 1.50706 * 109.46878 * 95.00293 * 6 4 2 8 8 O 1.21282 * 119.99619 * 0.02562 * 7 6 4 9 9 N 1.34768 * 119.99541 * 180.02562 * 7 6 4 10 10 C 1.46925 * 120.63523 * 359.97438 * 9 7 6 11 11 C 1.53194 * 108.77560 * 126.39429 * 10 9 7 12 12 C 1.53040 * 109.31293 * 54.63603 * 11 10 9 13 13 H 1.09004 * 109.46241 * 58.65230 * 12 11 10 14 14 C 1.52999 * 109.44937 * 178.62204 * 12 11 10 15 15 C 1.53041 * 109.53749 * 298.63497 * 12 11 10 16 16 H 1.09000 * 109.49435 * 301.38105 * 15 12 11 17 17 C 1.53002 * 109.49546 * 181.31753 * 15 12 11 18 18 N 1.46500 * 109.46747 * 174.99841 * 17 15 12 19 19 C 1.36946 * 119.99934 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99811 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99740 * 179.97438 * 19 18 17 22 22 N 1.31616 * 120.00604 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99335 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46893 * 90.00681 * 23 21 19 25 25 H 1.48503 * 109.46923 * 209.99865 * 23 21 19 26 26 H 1.48492 * 109.47421 * 330.00179 * 23 21 19 27 27 C 1.46929 * 120.62641 * 180.02562 * 9 7 6 28 28 H 1.09003 * 109.47125 * 269.99804 * 1 2 3 29 29 H 1.09003 * 109.47435 * 30.00188 * 1 2 3 30 30 H 1.08999 * 109.47163 * 149.99949 * 1 2 3 31 31 H 1.08998 * 109.47310 * 185.43691 * 3 2 1 32 32 H 1.09002 * 109.47056 * 305.43275 * 3 2 1 33 33 H 1.09000 * 109.47251 * 65.43099 * 3 2 1 34 34 H 1.08995 * 109.47254 * 174.94304 * 5 4 2 35 35 H 1.09004 * 109.46942 * 294.94454 * 5 4 2 36 36 H 1.09001 * 109.47020 * 54.94453 * 5 4 2 37 37 H 1.08999 * 109.46840 * 335.00723 * 6 4 2 38 38 H 1.08995 * 109.47191 * 215.00189 * 6 4 2 39 39 H 1.08994 * 109.58702 * 6.60268 * 10 9 7 40 40 H 1.09001 * 109.58527 * 246.18158 * 10 9 7 41 41 H 1.09000 * 109.49702 * 294.68100 * 11 10 9 42 42 H 1.08996 * 109.49319 * 174.58585 * 11 10 9 43 43 H 1.08997 * 109.47025 * 180.02562 * 14 12 11 44 44 H 1.09003 * 109.47144 * 300.06162 * 14 12 11 45 45 H 1.08996 * 109.47227 * 60.05800 * 14 12 11 46 46 H 1.08999 * 109.47325 * 294.99552 * 17 15 12 47 47 H 1.08997 * 109.46860 * 55.00267 * 17 15 12 48 48 H 0.96998 * 120.00571 * 0.02562 * 18 17 15 49 49 H 0.96999 * 120.00163 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.59174 * 113.81985 * 27 9 7 51 51 H 1.08998 * 109.58768 * 353.38897 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1620 -1.1344 -0.0005 5 6 3.6666 -1.1358 0.0849 6 6 1.4110 -2.4382 -0.0864 7 6 1.3479 -2.8879 -1.5234 8 8 1.8626 -2.2160 -2.3921 9 7 0.7197 -4.0365 -1.8430 10 6 0.0919 -4.8613 -0.8017 11 6 -1.3675 -5.1187 -1.1896 12 6 -1.4183 -5.7303 -2.5915 13 1 -0.8479 -6.6591 -2.6034 14 6 -2.8725 -6.0204 -2.9684 15 6 -0.8162 -4.7493 -3.6001 16 1 -1.3713 -3.8117 -3.5714 17 6 -0.8974 -5.3481 -5.0058 18 7 -0.4313 -4.3622 -5.9840 19 6 -0.4141 -4.6756 -7.3170 20 1 -0.7436 -5.6497 -7.6470 21 6 0.0270 -3.7412 -8.2440 22 7 0.4282 -2.5539 -7.8420 23 14 0.0512 -4.1691 -10.0622 24 1 -1.2487 -3.7963 -10.6757 25 1 1.1466 -3.4228 -10.7318 26 1 0.2750 -5.6281 -10.2245 27 6 0.6504 -4.4883 -3.2394 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 3.3281 1.1084 -0.0974 32 1 1.9261 1.9177 -0.8374 33 1 2.0721 1.8334 0.9346 34 1 4.0252 -2.1622 0.1620 35 1 4.0818 -0.6721 -0.8099 36 1 3.9811 -0.5742 0.9646 37 1 0.3995 -2.3007 0.2960 38 1 1.9248 -3.1933 0.5084 39 1 0.1293 -4.3359 0.1525 40 1 0.6210 -5.8108 -0.7193 41 1 -1.9171 -4.1773 -1.1832 42 1 -1.8176 -5.8081 -0.4754 43 1 -2.9091 -6.4565 -3.9667 44 1 -3.3016 -6.7192 -2.2502 45 1 -3.4430 -5.0918 -2.9570 46 1 -0.2693 -6.2373 -5.0587 47 1 -1.9299 -5.6187 -5.2263 48 1 -0.1350 -3.4874 -5.6877 49 1 0.7367 -1.9012 -8.4897 50 1 1.2248 -5.4075 -3.3550 51 1 1.0561 -3.7167 -3.8937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133043493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:30 Heat of formation + Delta-G solvation = -29.974227 kcal Electronic energy + Delta-G solvation = -26760.997337 eV Core-core repulsion = 23274.099683 eV Total energy + Delta-G solvation = -3486.897655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.25936 -38.32083 -36.84903 -34.91928 -33.62776 -31.91421 -31.11794 -29.96511 -29.55150 -28.09740 -26.67224 -25.34371 -23.96082 -23.19528 -22.96067 -21.18986 -19.95054 -18.93561 -17.17450 -16.99376 -16.71014 -15.89141 -15.60088 -14.82293 -14.74541 -14.41785 -14.30615 -14.25521 -13.85614 -13.63513 -13.36900 -13.14598 -13.01397 -12.80751 -12.56405 -12.46581 -12.36825 -12.22821 -11.99240 -11.81509 -11.78138 -11.67441 -11.49626 -11.28740 -10.96751 -10.87123 -10.78286 -10.67958 -10.55436 -10.24428 -10.11767 -9.91201 -9.60285 -9.49275 -8.80401 -8.44821 -8.39638 -6.83479 -5.67279 -2.96920 2.06099 2.86481 3.24418 3.48516 3.52990 3.55464 4.60538 4.61518 4.69771 4.73726 4.84572 4.88462 4.96351 5.04936 5.20102 5.22953 5.30827 5.35018 5.40394 5.44990 5.48684 5.63484 5.64168 5.67558 5.69899 5.70509 5.74314 5.77810 5.84723 5.85395 5.93776 5.95633 5.96654 5.99967 6.04845 6.06150 6.22910 6.28106 6.36051 6.48586 6.61024 6.63619 6.74282 6.86003 6.94305 6.97918 7.61954 7.76523 8.44135 8.50414 9.61310 10.20005 10.54067 11.55025 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.003919 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.722022 B = 7142.663013 C = 8782.854074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.127 4.127 3 C -0.117 4.117 4 C -0.116 4.116 5 C -0.108 4.108 6 C -0.104 4.104 7 C 0.511 3.489 8 O -0.521 6.521 9 N -0.615 5.615 10 C 0.107 3.893 11 C -0.129 4.129 12 C -0.084 4.084 13 H 0.070 0.930 14 C -0.148 4.148 15 C -0.101 4.101 16 H 0.073 0.927 17 C 0.159 3.841 18 N -0.733 5.733 19 C -0.242 4.242 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.929 5.929 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.120 3.880 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.048 0.952 45 H 0.053 0.947 46 H 0.017 0.983 47 H 0.026 0.974 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.063 0.937 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.787 -1.494 23.329 23.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.127 4.127 3 C -0.174 4.174 4 C -0.117 4.117 5 C -0.165 4.165 6 C -0.144 4.144 7 C 0.299 3.701 8 O -0.396 6.396 9 N -0.349 5.349 10 C -0.017 4.017 11 C -0.167 4.167 12 C -0.103 4.103 13 H 0.089 0.911 14 C -0.205 4.205 15 C -0.120 4.120 16 H 0.091 0.909 17 C 0.031 3.969 18 N -0.378 5.378 19 C -0.373 4.373 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.001 4.001 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.035 0.965 47 H 0.044 0.956 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.081 0.919 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.498 -1.207 22.693 22.731 hybrid contribution -0.010 -0.042 -0.975 0.976 sum -0.507 -1.249 21.718 21.760 Atomic orbital electron populations 1.20841 0.92598 1.02746 1.01389 1.21327 0.95489 0.94718 1.01189 1.20849 1.00093 0.94866 1.01589 1.20810 0.95444 0.92809 1.02596 1.20729 0.92219 1.01933 1.01619 1.20804 1.02077 0.96782 0.94736 1.20538 0.78405 0.80352 0.90852 1.90769 1.45114 1.53450 1.50293 1.48215 1.55467 1.22660 1.08593 1.21725 0.93647 0.95494 0.90794 1.21986 0.95835 1.01511 0.97378 1.21086 0.96933 0.98517 0.93798 0.91128 1.21881 0.95505 1.01328 1.01780 1.21720 0.95471 0.99154 0.95705 0.90892 1.20721 0.97096 0.92579 0.86539 1.42422 1.78117 1.14549 1.02667 1.19201 1.36380 0.98465 0.83233 0.91279 1.24747 1.02034 0.96185 0.97908 1.69676 1.49561 1.05461 1.33062 0.86222 0.77145 0.77343 0.85665 1.21795 1.21797 1.20808 1.21714 0.96556 1.00967 0.80898 0.91735 0.91852 0.91905 0.91553 0.91558 0.92067 0.92558 0.91215 0.91980 0.88398 0.88871 0.90167 0.91467 0.91529 0.90939 0.91638 0.93260 0.92813 0.96473 0.95599 0.78116 0.93512 0.91875 0.87906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.24 36.01 0.33 -0.95 16 2 C -0.13 -1.50 6.05 -101.06 -0.61 -2.11 16 3 C -0.12 -1.21 9.86 36.01 0.36 -0.85 16 4 C -0.12 -1.41 4.54 -101.06 -0.46 -1.87 16 5 C -0.11 -1.19 8.55 36.01 0.31 -0.88 16 6 C -0.10 -1.17 3.50 -29.03 -0.10 -1.27 16 7 C 0.51 7.97 7.62 -10.99 -0.08 7.88 16 8 O -0.52 -10.79 15.45 5.56 0.09 -10.70 16 9 N -0.61 -8.74 2.97 -172.72 -0.51 -9.25 16 10 C 0.11 1.05 6.34 -3.71 -0.02 1.02 16 11 C -0.13 -1.27 5.36 -26.61 -0.14 -1.41 16 12 C -0.08 -1.04 2.23 -90.58 -0.20 -1.24 16 13 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 14 C -0.15 -1.74 8.82 37.16 0.33 -1.42 16 15 C -0.10 -1.67 1.92 -90.46 -0.17 -1.85 16 16 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 17 C 0.16 3.23 5.41 -4.04 -0.02 3.21 16 18 N -0.73 -19.23 5.38 -59.91 -0.32 -19.56 16 19 C -0.24 -6.97 9.99 -15.06 -0.15 -7.13 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -29.39 13.06 55.49 0.72 -28.67 16 23 Si 0.91 23.08 29.55 -169.99 -5.02 18.05 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 27 C 0.12 2.09 5.52 -3.67 -0.02 2.07 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 30 H 0.06 0.74 6.20 -51.93 -0.32 0.41 16 31 H 0.07 0.66 5.85 -51.93 -0.30 0.35 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.59 7.98 -51.93 -0.41 0.17 16 35 H 0.07 0.86 7.74 -51.93 -0.40 0.46 16 36 H 0.06 0.55 7.76 -51.93 -0.40 0.15 16 37 H 0.10 0.92 5.64 -51.93 -0.29 0.63 16 38 H 0.09 0.82 7.91 -51.93 -0.41 0.41 16 39 H 0.08 0.59 5.93 -51.93 -0.31 0.29 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.85 6.29 -51.93 -0.33 0.53 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.03 0.53 6.14 -51.93 -0.32 0.21 16 48 H 0.38 10.86 6.90 -40.82 -0.28 10.58 16 49 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 50 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.10 2.25 6.22 -51.93 -0.32 1.93 16 LS Contribution 390.70 15.07 5.89 5.89 Total: -1.00 -34.38 390.70 -9.07 -43.45 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -9.15 Total: 8.05 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -0.76 Total: -7.26 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.11 Total: -57.47 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.38 -9.07 -43.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133043493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.474 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds