Wall clock time and date at job start Fri Apr 10 2020 22:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50700 * 119.99989 * 2 1 4 4 C 1.30995 * 119.99961 * 179.97438 * 2 1 3 5 5 C 1.50697 * 120.00120 * 174.40996 * 4 2 1 6 6 C 1.50700 * 120.00230 * 354.41757 * 4 2 1 7 7 C 1.50699 * 109.47522 * 94.99412 * 6 4 2 8 8 O 1.21287 * 119.99949 * 0.02562 * 7 6 4 9 9 N 1.34772 * 120.00158 * 180.02562 * 7 6 4 10 10 C 1.46957 * 120.65618 * 359.81642 * 9 7 6 11 11 C 1.53191 * 108.88832 * 233.53943 * 10 9 7 12 12 C 1.53045 * 109.31338 * 305.44077 * 11 10 9 13 13 H 1.09007 * 109.45540 * 301.34505 * 12 11 10 14 14 C 1.52999 * 109.45000 * 181.38019 * 12 11 10 15 15 C 1.53039 * 109.53690 * 61.36738 * 12 11 10 16 16 H 1.08994 * 109.52593 * 58.60182 * 15 12 11 17 17 C 1.52998 * 109.49381 * 178.68607 * 15 12 11 18 18 N 1.46501 * 109.46756 * 184.83723 * 17 15 12 19 19 C 1.36940 * 120.00012 * 179.97438 * 18 17 15 20 20 H 1.07992 * 119.99975 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00034 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00323 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47402 * 60.00214 * 23 21 19 25 25 H 1.48505 * 109.47103 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47291 * 300.00064 * 23 21 19 27 27 C 1.46923 * 120.63010 * 180.02562 * 9 7 6 28 28 H 1.09004 * 109.47705 * 269.99901 * 1 2 3 29 29 H 1.09004 * 109.47565 * 30.00176 * 1 2 3 30 30 H 1.09000 * 109.47382 * 150.00071 * 1 2 3 31 31 H 1.08997 * 109.47142 * 244.84447 * 3 2 1 32 32 H 1.09003 * 109.46843 * 4.84316 * 3 2 1 33 33 H 1.09001 * 109.47139 * 124.84356 * 3 2 1 34 34 H 1.09004 * 109.47316 * 275.30176 * 5 4 2 35 35 H 1.08997 * 109.46805 * 35.30193 * 5 4 2 36 36 H 1.08996 * 109.47314 * 155.30003 * 5 4 2 37 37 H 1.09004 * 109.46942 * 334.99768 * 6 4 2 38 38 H 1.09002 * 109.47278 * 214.99872 * 6 4 2 39 39 H 1.08993 * 109.46787 * 113.75588 * 10 9 7 40 40 H 1.08995 * 109.71214 * 353.46701 * 10 9 7 41 41 H 1.08999 * 109.49687 * 185.49106 * 11 10 9 42 42 H 1.09000 * 109.53066 * 65.41062 * 11 10 9 43 43 H 1.08994 * 109.47388 * 299.94096 * 14 12 11 44 44 H 1.09002 * 109.47105 * 59.93860 * 14 12 11 45 45 H 1.08997 * 109.47181 * 179.97438 * 14 12 11 46 46 H 1.08994 * 109.47125 * 304.83336 * 17 15 12 47 47 H 1.09002 * 109.47521 * 64.83825 * 17 15 12 48 48 H 0.97004 * 119.99852 * 359.97438 * 18 17 15 49 49 H 0.96997 * 120.00574 * 179.97438 * 22 21 19 50 50 H 1.08998 * 109.58961 * 6.59769 * 27 9 7 51 51 H 1.09007 * 109.58802 * 246.31707 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 3.6635 -1.1377 -0.1266 6 6 1.4139 -2.4364 0.1280 7 6 1.1521 -3.0020 -1.2441 8 8 1.5357 -2.4066 -2.2287 9 7 0.4917 -4.1693 -1.3771 10 6 0.0240 -4.9046 -0.1938 11 6 0.5500 -6.3417 -0.2632 12 6 0.1363 -6.9684 -1.5968 13 1 -0.9501 -6.9519 -1.6841 14 6 0.6305 -8.4152 -1.6549 15 6 0.7527 -6.1723 -2.7493 16 1 1.8380 -6.1675 -2.6493 17 6 0.3655 -6.8188 -4.0809 18 7 1.0485 -6.1266 -5.1766 19 6 0.8543 -6.5330 -6.4698 20 1 0.1974 -7.3634 -6.6820 21 6 1.5011 -5.8769 -7.5081 22 7 2.3015 -4.8644 -7.2496 23 14 1.2368 -6.4316 -9.2720 24 1 -0.2030 -6.3165 -9.6167 25 1 2.0349 -5.5748 -10.1853 26 1 1.6689 -7.8451 -9.4165 27 6 0.2295 -4.7335 -2.7081 28 1 -0.3635 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 2.8204 1.4013 -0.9302 32 1 1.5553 2.1317 0.0868 33 1 2.9506 1.3262 0.8434 34 1 3.9391 -1.0939 -1.1803 35 1 4.0739 -0.2716 0.3925 36 1 4.0637 -2.0498 0.3160 37 1 0.4654 -2.2622 0.6362 38 1 2.0105 -3.1433 0.7047 39 1 -1.0658 -4.9147 -0.1797 40 1 0.3967 -4.4224 0.7098 41 1 0.1299 -6.9229 0.5577 42 1 1.6372 -6.3360 -0.1856 43 1 1.7169 -8.4318 -1.5679 44 1 0.1916 -8.9823 -0.8341 45 1 0.3357 -8.8619 -2.6044 46 1 0.6599 -7.8682 -4.0745 47 1 -0.7130 -6.7448 -4.2207 48 1 1.6384 -5.3805 -4.9860 49 1 2.7537 -4.4061 -7.9750 50 1 0.7397 -4.1375 -3.4647 51 1 -0.8432 -4.7294 -2.9019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133043495.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:32 Heat of formation + Delta-G solvation = -32.169768 kcal Electronic energy + Delta-G solvation = -26683.496165 eV Core-core repulsion = 23196.503305 eV Total energy + Delta-G solvation = -3486.992860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.25989 -38.32744 -36.83068 -34.91817 -33.62811 -31.92065 -31.15074 -29.92832 -29.52903 -28.09624 -26.70965 -25.34869 -23.96586 -23.19389 -22.95764 -21.18863 -19.94585 -18.94791 -17.19225 -17.00575 -16.71648 -15.82104 -15.64646 -14.81688 -14.72212 -14.46457 -14.30942 -14.22388 -13.84973 -13.62618 -13.36134 -13.14602 -13.01250 -12.79143 -12.58123 -12.51880 -12.32363 -12.17607 -12.06307 -11.91042 -11.73928 -11.67683 -11.49603 -11.30811 -10.95905 -10.86636 -10.78393 -10.72368 -10.55041 -10.26318 -10.11527 -9.92664 -9.60364 -9.49572 -8.79908 -8.46824 -8.39194 -6.83509 -5.67062 -2.96765 2.05833 2.85772 3.23613 3.49041 3.52888 3.54676 4.59019 4.61838 4.69414 4.74955 4.83470 4.88990 4.96259 5.00950 5.19671 5.22419 5.31490 5.33233 5.40596 5.42399 5.49083 5.60613 5.64198 5.64479 5.69701 5.70213 5.75468 5.82652 5.84724 5.87484 5.88711 5.92653 5.94672 6.00114 6.06069 6.10698 6.22866 6.28241 6.36168 6.48679 6.59552 6.63450 6.74303 6.86000 6.94273 6.96640 7.61771 7.76090 8.43681 8.50628 9.61397 10.20057 10.54185 11.55168 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.012025 B = 0.003814 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.986314 B = 7339.911852 C = 9082.333689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.131 4.131 3 C -0.112 4.112 4 C -0.114 4.114 5 C -0.113 4.113 6 C -0.103 4.103 7 C 0.511 3.489 8 O -0.522 6.522 9 N -0.615 5.615 10 C 0.107 3.893 11 C -0.129 4.129 12 C -0.084 4.084 13 H 0.070 0.930 14 C -0.148 4.148 15 C -0.101 4.101 16 H 0.073 0.927 17 C 0.159 3.841 18 N -0.733 5.733 19 C -0.242 4.242 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.287 1.287 27 C 0.120 3.880 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.026 0.974 47 H 0.017 0.983 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.103 0.897 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.713 4.006 22.946 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.131 4.131 3 C -0.168 4.168 4 C -0.114 4.114 5 C -0.170 4.170 6 C -0.143 4.143 7 C 0.298 3.702 8 O -0.397 6.397 9 N -0.349 5.349 10 C -0.017 4.017 11 C -0.167 4.167 12 C -0.103 4.103 13 H 0.089 0.911 14 C -0.205 4.205 15 C -0.121 4.121 16 H 0.091 0.909 17 C 0.031 3.969 18 N -0.377 5.377 19 C -0.374 4.374 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.002 4.002 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.044 0.956 47 H 0.035 0.965 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.121 0.879 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.554 4.268 22.252 22.935 hybrid contribution 0.000 -0.228 -0.950 0.977 sum -3.555 4.039 21.302 21.971 Atomic orbital electron populations 1.20839 0.92544 1.02603 1.01255 1.21320 0.95441 0.94614 1.01758 1.20775 0.99645 0.94519 1.01902 1.20812 0.95687 0.92687 1.02222 1.20792 0.91887 1.01645 1.02643 1.20812 1.01631 0.96269 0.95560 1.20568 0.77691 0.80594 0.91319 1.90770 1.49990 1.58869 1.40048 1.48227 1.57144 1.21852 1.07695 1.21718 0.99245 0.92658 0.88032 1.21983 1.01644 0.95069 0.98009 1.21086 1.00263 0.95080 0.93896 0.91134 1.21880 1.01181 0.95536 1.01896 1.21695 1.00767 0.94079 0.95514 0.90881 1.20719 0.95338 0.94988 0.85875 1.42413 1.54886 1.38753 1.01688 1.19155 1.22553 1.12175 0.83482 0.91333 1.24747 0.99887 0.98350 0.97865 1.69666 1.33330 1.23599 1.31187 0.86295 0.77384 0.77627 0.85019 1.21315 1.21709 1.21350 1.21680 1.00565 0.94332 0.83581 0.91891 0.91854 0.92043 0.91514 0.92374 0.91768 0.90757 0.91891 0.92545 0.88631 0.88703 0.91519 0.90160 0.90936 0.91501 0.92806 0.93261 0.91640 0.95594 0.96484 0.78116 0.93457 0.87918 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 8.94 36.00 0.32 -0.88 16 2 C -0.13 -1.50 6.04 -101.07 -0.61 -2.11 16 3 C -0.11 -1.08 8.81 36.01 0.32 -0.76 16 4 C -0.11 -1.37 4.54 -101.07 -0.46 -1.83 16 5 C -0.11 -1.29 9.54 36.00 0.34 -0.95 16 6 C -0.10 -1.15 3.51 -29.04 -0.10 -1.25 16 7 C 0.51 7.93 7.24 -10.99 -0.08 7.85 16 8 O -0.52 -10.75 15.45 5.55 0.09 -10.66 16 9 N -0.61 -8.73 2.98 -172.77 -0.51 -9.24 16 10 C 0.11 1.05 6.33 -3.69 -0.02 1.03 16 11 C -0.13 -1.27 5.36 -26.61 -0.14 -1.41 16 12 C -0.08 -1.04 2.23 -90.58 -0.20 -1.24 16 13 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 14 C -0.15 -1.75 8.82 37.16 0.33 -1.42 16 15 C -0.10 -1.67 1.92 -90.52 -0.17 -1.85 16 16 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 17 C 0.16 3.23 5.41 -4.04 -0.02 3.21 16 18 N -0.73 -19.23 5.38 -59.91 -0.32 -19.55 16 19 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -29.37 13.06 55.49 0.72 -28.64 16 23 Si 0.91 23.08 29.55 -169.99 -5.02 18.05 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 C 0.12 2.08 5.51 -3.73 -0.02 2.06 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 30 H 0.06 0.72 6.36 -51.93 -0.33 0.39 16 31 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 32 H 0.06 0.49 7.98 -51.93 -0.41 0.08 16 33 H 0.06 0.53 7.30 -51.93 -0.38 0.15 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.60 6.51 -51.93 -0.34 0.26 16 36 H 0.06 0.58 8.03 -51.93 -0.42 0.17 16 37 H 0.10 0.87 6.34 -51.93 -0.33 0.54 16 38 H 0.09 0.87 7.62 -51.93 -0.40 0.48 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.60 5.95 -51.93 -0.31 0.29 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.85 6.30 -51.93 -0.33 0.53 16 46 H 0.03 0.53 6.15 -51.93 -0.32 0.21 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.38 10.86 6.89 -40.82 -0.28 10.57 16 49 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 50 H 0.10 2.25 6.20 -51.93 -0.32 1.92 16 51 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -34.24 390.96 -9.13 -43.38 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -9.20 Total: 7.95 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.77 Total: -7.17 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.11 Total: -57.44 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.24 -9.13 -43.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133043495.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.206 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds