Wall clock time and date at job start Fri Apr 10 2020 22:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.52515 * 2 1 4 4 C 1.53194 * 109.48962 * 120.09643 * 2 1 3 5 5 N 1.46931 * 108.76321 * 174.59918 * 4 2 1 6 6 C 1.34773 * 120.62671 * 126.40440 * 5 4 2 7 7 O 1.21281 * 120.00560 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99684 * 179.97438 * 6 5 4 9 9 C 1.53783 * 113.61318 * 279.13434 * 8 6 5 10 10 C 1.53960 * 87.01926 * 220.04648 * 9 8 6 11 11 C 1.52995 * 113.53999 * 270.80885 * 10 9 8 12 12 C 1.53007 * 113.73962 * 139.94478 * 10 9 8 13 13 C 1.53774 * 87.10992 * 25.36485 * 10 9 8 14 14 C 1.46924 * 118.73897 * 306.37969 * 5 4 2 15 15 C 1.53194 * 108.77390 * 53.61086 * 14 5 4 16 16 C 1.53040 * 109.31367 * 305.36176 * 15 14 5 17 17 H 1.08995 * 109.45933 * 301.36091 * 16 15 14 18 18 C 1.53001 * 109.45855 * 181.38794 * 16 15 14 19 19 N 1.46490 * 109.47264 * 64.97245 * 18 16 15 20 20 C 1.36935 * 120.00121 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.46653 * 299.99639 * 24 22 20 27 27 H 1.48495 * 109.47483 * 60.00002 * 24 22 20 28 28 H 1.09004 * 109.46553 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46675 * 300.07299 * 1 2 3 30 30 H 1.08992 * 109.47161 * 60.07579 * 1 2 3 31 31 H 1.09001 * 109.60048 * 54.81099 * 4 2 1 32 32 H 1.09001 * 109.70040 * 294.44864 * 4 2 1 33 33 H 1.09001 * 112.85695 * 50.33248 * 8 6 5 34 34 H 1.08993 * 113.61473 * 334.56877 * 9 8 6 35 35 H 1.09006 * 113.61195 * 105.47463 * 9 8 6 36 36 H 1.09004 * 109.47150 * 157.49184 * 11 10 9 37 37 H 1.08995 * 109.47666 * 277.49692 * 11 10 9 38 38 H 1.08998 * 109.47075 * 37.50163 * 11 10 9 39 39 H 1.08998 * 109.46982 * 322.40268 * 12 10 9 40 40 H 1.08993 * 109.47214 * 82.40212 * 12 10 9 41 41 H 1.08994 * 109.46804 * 202.40436 * 12 10 9 42 42 H 1.09008 * 113.61476 * 220.08925 * 13 10 9 43 43 H 1.09003 * 113.61622 * 89.18658 * 13 10 9 44 44 H 1.08997 * 109.58682 * 293.82790 * 14 5 4 45 45 H 1.09000 * 109.70075 * 173.46616 * 14 5 4 46 46 H 1.09002 * 109.49391 * 185.41031 * 15 14 5 47 47 H 1.08995 * 109.50041 * 65.31952 * 15 14 5 48 48 H 1.09003 * 109.46836 * 304.96952 * 18 16 15 49 49 H 1.08999 * 109.47071 * 184.97991 * 18 16 15 50 50 H 0.97000 * 120.00577 * 0.02562 * 19 18 16 51 51 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0411 -0.7242 1.2495 5 7 3.5045 -0.8292 1.1695 6 6 4.2808 -0.3865 2.1783 7 8 3.7727 0.1046 3.1640 8 6 5.7802 -0.5017 2.0816 9 6 6.3148 -1.8993 2.4362 10 6 7.4683 -1.1854 3.1642 11 6 8.6722 -0.8962 2.2655 12 6 7.8603 -1.8419 4.4895 13 6 6.5194 0.0136 3.3278 14 6 4.1053 -1.4264 -0.0309 15 6 3.5708 -0.6946 -1.2661 16 6 2.0407 -0.7230 -1.2485 17 1 1.6969 -1.7572 -1.2354 18 6 1.5036 -0.0230 -2.4985 19 7 1.8924 -0.7831 -3.6889 20 6 1.5208 -0.3456 -4.9321 21 1 0.9414 0.5600 -5.0351 22 6 1.8887 -1.0661 -6.0602 23 7 2.5944 -2.1700 -5.9347 24 14 1.3824 -0.4689 -7.7562 25 1 1.8953 -1.4085 -8.7854 26 1 -0.0992 -0.4073 -7.8373 27 1 1.9478 0.8835 -7.9941 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5150 0.8894 30 1 -0.3633 0.5126 -0.8906 31 1 1.6053 -1.7221 1.2977 32 1 1.7633 -0.1607 2.1402 33 1 6.1756 -0.1076 1.1454 34 1 5.6598 -2.4614 3.1017 35 1 6.6356 -2.4770 1.5692 36 1 9.2532 -0.0769 2.6889 37 1 9.2966 -1.7869 2.1967 38 1 8.3244 -0.6185 1.2705 39 1 6.9646 -2.2025 4.9953 40 1 8.5303 -2.6795 4.2958 41 1 8.3652 -1.1114 5.1214 42 1 7.0051 0.9782 3.1796 43 1 5.9204 -0.0245 4.2376 44 1 3.8377 -2.4815 -0.0872 45 1 5.1898 -1.3262 0.0123 46 1 3.9335 -1.1890 -2.1672 47 1 3.9156 0.3393 -1.2540 48 1 1.9187 0.9831 -2.5581 49 1 0.4165 0.0352 -2.4435 50 1 2.4124 -1.5967 -3.5965 51 1 2.8576 -2.4799 -5.0540 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184297161.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:18 Heat of formation + Delta-G solvation = -27.000766 kcal Electronic energy + Delta-G solvation = -26609.565832 eV Core-core repulsion = 23122.797116 eV Total energy + Delta-G solvation = -3486.768716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.98322 -39.26635 -37.66276 -35.14918 -33.77439 -32.10681 -31.15692 -30.17902 -27.73317 -27.08100 -26.72207 -25.96438 -24.11880 -23.21239 -22.50150 -21.43377 -19.86770 -18.90811 -18.51999 -17.43150 -17.14558 -16.10779 -15.67571 -15.11646 -14.82548 -14.59980 -14.43179 -14.33496 -13.97476 -13.62190 -13.55590 -13.30071 -13.19574 -13.06103 -12.86482 -12.71772 -12.46445 -12.14963 -11.98734 -11.87256 -11.83455 -11.68761 -11.33949 -11.08280 -10.94586 -10.75058 -10.70994 -10.58237 -10.45331 -10.38465 -10.25885 -10.14868 -9.94607 -9.61916 -9.17184 -8.87067 -8.60618 -6.98994 -6.10914 -3.09823 2.55945 2.95953 3.51152 3.54555 3.71960 4.12604 4.24280 4.33525 4.43972 4.62334 4.65649 4.79672 4.88953 4.93068 4.98760 5.06590 5.14254 5.27038 5.33208 5.33370 5.41037 5.46446 5.48756 5.53237 5.55284 5.60324 5.62334 5.65187 5.72956 5.75302 5.79404 5.83627 5.85171 5.86577 5.89505 5.95178 6.07981 6.16586 6.20947 6.22438 6.26000 6.40211 6.43481 6.55088 6.75923 6.85193 7.38238 7.80928 8.14176 8.75514 9.23423 10.09631 10.24996 11.37768 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.018138 B = 0.003020 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.363758 B = 9269.327369 C =10437.545446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.072 0.928 4 C 0.117 3.883 5 N -0.607 5.607 6 C 0.525 3.475 7 O -0.549 6.549 8 C -0.137 4.137 9 C -0.114 4.114 10 C -0.090 4.090 11 C -0.130 4.130 12 C -0.134 4.134 13 C -0.107 4.107 14 C 0.107 3.893 15 C -0.126 4.126 16 C -0.090 4.090 17 H 0.070 0.930 18 C 0.162 3.838 19 N -0.743 5.743 20 C -0.329 4.329 21 H 0.063 0.937 22 C -0.046 4.046 23 N -0.945 5.945 24 Si 1.079 2.921 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.296 1.296 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.064 0.936 48 H 0.017 0.983 49 H 0.025 0.975 50 H 0.366 0.634 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.461 0.989 19.659 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.006 4.006 5 N -0.339 5.339 6 C 0.313 3.687 7 O -0.427 6.427 8 C -0.158 4.158 9 C -0.151 4.151 10 C -0.090 4.090 11 C -0.187 4.187 12 C -0.192 4.192 13 C -0.145 4.145 14 C -0.016 4.016 15 C -0.164 4.164 16 C -0.109 4.109 17 H 0.089 0.911 18 C 0.035 3.965 19 N -0.389 5.389 20 C -0.460 4.460 21 H 0.081 0.919 22 C -0.244 4.244 23 N -0.591 5.591 24 Si 0.910 3.090 25 H -0.210 1.210 26 H -0.223 1.223 27 H -0.223 1.223 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.131 0.869 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.112 0.888 44 H 0.087 0.913 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.083 0.917 48 H 0.035 0.965 49 H 0.043 0.957 50 H 0.199 0.801 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.137 1.124 18.514 20.255 hybrid contribution -0.049 0.151 1.428 1.436 sum 8.088 1.275 19.941 21.557 Atomic orbital electron populations 1.21831 0.94386 1.02160 1.02083 1.21444 0.96122 0.99898 0.94125 0.90938 1.21685 0.79069 1.00731 0.99068 1.48151 1.06909 1.60578 1.18246 1.20508 0.89070 0.76904 0.82190 1.90650 1.75464 1.45174 1.31409 1.22722 0.91582 1.00128 1.01389 1.23058 0.97016 0.94345 1.00731 1.21823 0.94299 0.96755 0.96126 1.21617 0.96454 1.01704 0.98913 1.21710 1.01407 1.00204 0.95849 1.22955 0.96462 0.97595 0.97502 1.21851 0.98131 0.97335 0.84234 1.21933 0.96124 1.01184 0.97174 1.21352 0.94702 1.00095 0.94704 0.91143 1.20688 0.96722 0.93944 0.85171 1.42381 1.66034 1.28671 1.01787 1.20031 1.31931 1.08799 0.85252 0.91903 1.25755 0.99619 0.96628 1.02359 1.70896 1.40101 1.23089 1.25009 0.83248 0.75393 0.74912 0.75433 1.21030 1.22307 1.22309 0.92542 0.92913 0.91358 0.91699 0.89277 0.86943 0.89720 0.90540 0.92220 0.92227 0.92249 0.92499 0.92571 0.92457 0.91096 0.88765 0.91257 0.89843 0.89759 0.91714 0.96528 0.95718 0.80081 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.82 37.16 0.33 -1.51 16 2 C -0.10 -1.29 2.41 -90.50 -0.22 -1.51 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.12 1.49 5.72 -3.71 -0.02 1.47 16 5 N -0.61 -7.65 2.97 -172.77 -0.51 -8.17 16 6 C 0.52 6.96 7.22 -10.99 -0.08 6.88 16 7 O -0.55 -9.03 15.32 5.56 0.09 -8.94 16 8 C -0.14 -1.38 2.38 -90.96 -0.22 -1.60 16 9 C -0.11 -0.98 6.49 -25.82 -0.17 -1.14 16 10 C -0.09 -0.71 1.39 -153.60 -0.21 -0.92 16 11 C -0.13 -0.90 9.07 37.15 0.34 -0.56 16 12 C -0.13 -0.96 9.20 37.16 0.34 -0.62 16 13 C -0.11 -1.03 6.55 -25.92 -0.17 -1.20 16 14 C 0.11 1.24 6.30 -3.71 -0.02 1.22 16 15 C -0.13 -1.81 5.25 -26.61 -0.14 -1.95 16 16 C -0.09 -1.39 1.73 -90.57 -0.16 -1.55 16 17 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 18 C 0.16 3.23 5.41 -4.05 -0.02 3.21 16 19 N -0.74 -18.42 5.31 -59.91 -0.32 -18.74 16 20 C -0.33 -9.29 9.99 -15.06 -0.15 -9.44 16 21 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 22 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 23 N -0.95 -28.94 13.70 55.49 0.76 -28.18 16 24 Si 1.08 25.90 29.92 -169.99 -5.09 20.82 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.92 6.29 -51.93 -0.33 0.60 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.21 7.00 -51.93 -0.36 0.85 16 33 H 0.11 1.03 6.81 -51.93 -0.35 0.68 16 34 H 0.08 0.79 7.93 -51.93 -0.41 0.37 16 35 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.41 7.34 -51.93 -0.38 0.03 16 39 H 0.06 0.43 7.96 -51.93 -0.41 0.01 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.64 8.10 -51.92 -0.42 0.22 16 43 H 0.09 1.04 7.41 -51.93 -0.38 0.66 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 0.81 5.68 -51.93 -0.29 0.52 16 46 H 0.08 1.36 7.15 -51.93 -0.37 0.99 16 47 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.03 0.51 6.14 -51.93 -0.32 0.19 16 50 H 0.37 9.14 5.68 -40.82 -0.23 8.91 16 51 H 0.25 7.59 6.77 -40.82 -0.28 7.31 16 LS Contribution 385.87 15.07 5.81 5.81 Total: -1.00 -32.59 385.87 -9.18 -41.76 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -9.25 Total: 6.28 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -0.67 Total: -10.65 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.07 Total: -55.09 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.09 Total: 20.82 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.59 -9.18 -41.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184297161.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.763 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds