Wall clock time and date at job start Fri Apr 10 2020 22:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.52515 * 2 1 4 4 C 1.53194 * 109.48962 * 120.09643 * 2 1 3 5 5 N 1.46931 * 108.76321 * 174.59918 * 4 2 1 6 6 C 1.34773 * 120.62671 * 126.40440 * 5 4 2 7 7 O 1.21281 * 120.00560 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99684 * 179.97438 * 6 5 4 9 9 C 1.53783 * 113.61318 * 279.13434 * 8 6 5 10 10 C 1.53960 * 87.01926 * 220.04648 * 9 8 6 11 11 C 1.52995 * 113.53999 * 270.80885 * 10 9 8 12 12 C 1.53007 * 113.73962 * 139.94478 * 10 9 8 13 13 C 1.53774 * 87.10992 * 25.36485 * 10 9 8 14 14 C 1.46924 * 118.73897 * 306.37969 * 5 4 2 15 15 C 1.53194 * 108.77390 * 53.61086 * 14 5 4 16 16 C 1.53040 * 109.31367 * 305.36176 * 15 14 5 17 17 H 1.08995 * 109.45933 * 301.36091 * 16 15 14 18 18 C 1.53001 * 109.45855 * 181.38794 * 16 15 14 19 19 N 1.46490 * 109.47264 * 64.97245 * 18 16 15 20 20 C 1.36935 * 120.00121 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.46653 * 299.99639 * 24 22 20 27 27 H 1.48495 * 109.47483 * 60.00002 * 24 22 20 28 28 H 1.09004 * 109.46553 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46675 * 300.07299 * 1 2 3 30 30 H 1.08992 * 109.47161 * 60.07579 * 1 2 3 31 31 H 1.09001 * 109.60048 * 54.81099 * 4 2 1 32 32 H 1.09001 * 109.70040 * 294.44864 * 4 2 1 33 33 H 1.09001 * 112.85695 * 50.33248 * 8 6 5 34 34 H 1.08993 * 113.61473 * 334.56877 * 9 8 6 35 35 H 1.09006 * 113.61195 * 105.47463 * 9 8 6 36 36 H 1.09004 * 109.47150 * 157.49184 * 11 10 9 37 37 H 1.08995 * 109.47666 * 277.49692 * 11 10 9 38 38 H 1.08998 * 109.47075 * 37.50163 * 11 10 9 39 39 H 1.08998 * 109.46982 * 322.40268 * 12 10 9 40 40 H 1.08993 * 109.47214 * 82.40212 * 12 10 9 41 41 H 1.08994 * 109.46804 * 202.40436 * 12 10 9 42 42 H 1.09008 * 113.61476 * 220.08925 * 13 10 9 43 43 H 1.09003 * 113.61622 * 89.18658 * 13 10 9 44 44 H 1.08997 * 109.58682 * 293.82790 * 14 5 4 45 45 H 1.09000 * 109.70075 * 173.46616 * 14 5 4 46 46 H 1.09002 * 109.49391 * 185.41031 * 15 14 5 47 47 H 1.08995 * 109.50041 * 65.31952 * 15 14 5 48 48 H 1.09003 * 109.46836 * 304.96952 * 18 16 15 49 49 H 1.08999 * 109.47071 * 184.97991 * 18 16 15 50 50 H 0.97000 * 120.00577 * 0.02562 * 19 18 16 51 51 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0411 -0.7242 1.2495 5 7 3.5045 -0.8292 1.1695 6 6 4.2808 -0.3865 2.1783 7 8 3.7727 0.1046 3.1640 8 6 5.7802 -0.5017 2.0816 9 6 6.3148 -1.8993 2.4362 10 6 7.4683 -1.1854 3.1642 11 6 8.6722 -0.8962 2.2655 12 6 7.8603 -1.8419 4.4895 13 6 6.5194 0.0136 3.3278 14 6 4.1053 -1.4264 -0.0309 15 6 3.5708 -0.6946 -1.2661 16 6 2.0407 -0.7230 -1.2485 17 1 1.6969 -1.7572 -1.2354 18 6 1.5036 -0.0230 -2.4985 19 7 1.8924 -0.7831 -3.6889 20 6 1.5208 -0.3456 -4.9321 21 1 0.9414 0.5600 -5.0351 22 6 1.8887 -1.0661 -6.0602 23 7 2.5944 -2.1700 -5.9347 24 14 1.3824 -0.4689 -7.7562 25 1 1.8953 -1.4085 -8.7854 26 1 -0.0992 -0.4073 -7.8373 27 1 1.9478 0.8835 -7.9941 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5150 0.8894 30 1 -0.3633 0.5126 -0.8906 31 1 1.6053 -1.7221 1.2977 32 1 1.7633 -0.1607 2.1402 33 1 6.1756 -0.1076 1.1454 34 1 5.6598 -2.4614 3.1017 35 1 6.6356 -2.4770 1.5692 36 1 9.2532 -0.0769 2.6889 37 1 9.2966 -1.7869 2.1967 38 1 8.3244 -0.6185 1.2705 39 1 6.9646 -2.2025 4.9953 40 1 8.5303 -2.6795 4.2958 41 1 8.3652 -1.1114 5.1214 42 1 7.0051 0.9782 3.1796 43 1 5.9204 -0.0245 4.2376 44 1 3.8377 -2.4815 -0.0872 45 1 5.1898 -1.3262 0.0123 46 1 3.9335 -1.1890 -2.1672 47 1 3.9156 0.3393 -1.2540 48 1 1.9187 0.9831 -2.5581 49 1 0.4165 0.0352 -2.4435 50 1 2.4124 -1.5967 -3.5965 51 1 2.8576 -2.4799 -5.0540 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184297161.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:16 Heat of formation + Delta-G solvation = -44.997463 kcal Electronic energy + Delta-G solvation = -26610.346227 eV Core-core repulsion = 23122.797116 eV Total energy + Delta-G solvation = -3487.549111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.90910 -40.24557 -38.78707 -36.81697 -35.16987 -33.53635 -31.95010 -31.80362 -28.27759 -28.22530 -28.07222 -26.68281 -25.63701 -24.69857 -23.61675 -22.81621 -21.07195 -19.92064 -19.36235 -19.19389 -18.26080 -17.14320 -16.90842 -16.49378 -16.02433 -15.77714 -15.58223 -15.44096 -15.27178 -15.02347 -14.57651 -14.44512 -14.32528 -13.96573 -13.92437 -13.74260 -13.54891 -13.18743 -12.99409 -12.87122 -12.72346 -12.69178 -12.56274 -12.45896 -12.10021 -12.07037 -11.90152 -11.79049 -11.76320 -11.60711 -11.43965 -11.24317 -11.13657 -11.03869 -10.89932 -10.61626 -9.69890 -9.08318 -8.39178 -5.32389 1.53802 1.58592 1.67959 1.84696 1.96214 2.71021 3.38716 3.39663 3.46632 3.57004 3.58792 3.66502 3.72055 3.77791 3.91368 3.97847 4.08455 4.23942 4.30034 4.39012 4.44008 4.48063 4.53952 4.59089 4.66546 4.69029 4.73466 4.75377 4.77259 4.85142 4.87929 4.91376 4.93698 5.00408 5.02672 5.03346 5.11619 5.17744 5.18423 5.21631 5.24164 5.28045 5.42510 5.46130 5.52445 5.58903 5.60012 6.36228 6.51622 7.10869 7.11175 8.01680 8.12606 9.13159 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.018138 B = 0.003020 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.363758 B = 9269.327369 C =10437.545446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 H 0.063 0.937 4 C 0.120 3.880 5 N -0.607 5.607 6 C 0.521 3.479 7 O -0.585 6.585 8 C -0.137 4.137 9 C -0.109 4.109 10 C -0.081 4.081 11 C -0.129 4.129 12 C -0.134 4.134 13 C -0.111 4.111 14 C 0.115 3.885 15 C -0.121 4.121 16 C -0.079 4.079 17 H 0.068 0.932 18 C 0.163 3.837 19 N -0.752 5.752 20 C -0.336 4.336 21 H 0.061 0.939 22 C -0.101 4.101 23 N -0.973 5.973 24 Si 1.126 2.874 25 H -0.291 1.291 26 H -0.279 1.279 27 H -0.279 1.279 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.126 0.874 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.008 0.992 49 H 0.024 0.976 50 H 0.363 0.637 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.193 0.865 19.973 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.081 0.919 4 C -0.003 4.003 5 N -0.338 5.338 6 C 0.311 3.689 7 O -0.466 6.466 8 C -0.158 4.158 9 C -0.147 4.147 10 C -0.081 4.081 11 C -0.186 4.186 12 C -0.192 4.192 13 C -0.149 4.149 14 C -0.007 4.007 15 C -0.159 4.159 16 C -0.098 4.098 17 H 0.087 0.913 18 C 0.036 3.964 19 N -0.398 5.398 20 C -0.467 4.467 21 H 0.079 0.921 22 C -0.293 4.293 23 N -0.621 5.621 24 Si 0.951 3.049 25 H -0.217 1.217 26 H -0.206 1.206 27 H -0.205 1.205 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.144 0.856 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.125 0.875 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.026 0.974 49 H 0.042 0.958 50 H 0.196 0.804 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.861 1.015 18.858 20.861 hybrid contribution -0.317 0.243 1.389 1.445 sum 8.544 1.258 20.247 22.012 Atomic orbital electron populations 1.21801 0.93518 1.02585 1.02275 1.21335 0.96815 0.99095 0.93340 0.91855 1.21633 0.79477 1.01113 0.98071 1.48230 1.06869 1.60292 1.18398 1.21082 0.90351 0.75935 0.81564 1.90633 1.76357 1.46789 1.32826 1.22825 0.89219 1.01556 1.02201 1.23057 0.96924 0.93510 1.01194 1.21795 0.94261 0.95441 0.96600 1.21630 0.96024 1.02336 0.98629 1.21711 1.01351 1.00625 0.95478 1.22946 0.96783 0.98707 0.96466 1.21855 0.99341 0.97249 0.82273 1.21837 0.95191 1.00989 0.97900 1.21231 0.95532 0.99547 0.93470 0.91327 1.20803 0.96625 0.93410 0.85520 1.42541 1.65972 1.28954 1.02291 1.20359 1.31112 1.08489 0.86779 0.92110 1.27139 0.99614 0.96461 1.06071 1.70994 1.41962 1.24477 1.24646 0.82649 0.75999 0.74971 0.71317 1.21692 1.20567 1.20543 0.92010 0.91175 0.92681 0.90509 0.89938 0.85606 0.90544 0.89034 0.91793 0.91323 0.92140 0.93212 0.91522 0.92076 0.90684 0.90677 0.90120 0.87481 0.91627 0.92390 0.97448 0.95848 0.80439 0.94408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.82 71.98 0.63 -2.81 16 2 C -0.09 -2.24 2.41 -10.71 -0.03 -2.26 16 3 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.12 2.92 5.72 86.36 0.49 3.41 16 5 N -0.61 -14.48 2.97 -818.90 -2.43 -16.92 16 6 C 0.52 13.30 7.22 87.66 0.63 13.94 16 7 O -0.59 -19.18 15.32 -3.03 -0.05 -19.23 16 8 C -0.14 -2.54 2.38 -11.01 -0.03 -2.57 16 9 C -0.11 -1.65 6.49 31.18 0.20 -1.45 16 10 C -0.08 -1.12 1.39 -51.60 -0.07 -1.19 16 11 C -0.13 -1.46 9.07 71.98 0.65 -0.80 16 12 C -0.13 -1.70 9.20 71.98 0.66 -1.04 16 13 C -0.11 -2.01 6.55 31.12 0.20 -1.81 16 14 C 0.11 2.45 6.30 86.36 0.54 3.00 16 15 C -0.12 -3.39 5.25 30.67 0.16 -3.23 16 16 C -0.08 -2.41 1.73 -10.76 -0.02 -2.43 16 17 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 18 C 0.16 6.51 5.41 86.38 0.47 6.97 16 19 N -0.75 -37.64 5.31 -343.47 -1.83 -39.47 16 20 C -0.34 -19.01 9.99 84.03 0.84 -18.17 16 21 H 0.06 3.40 7.83 -2.91 -0.02 3.38 16 22 C -0.10 -5.86 5.50 84.86 0.47 -5.39 16 23 N -0.97 -59.97 13.70 21.65 0.30 -59.68 16 24 Si 1.13 51.76 29.92 68.60 2.05 53.81 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 28 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.46 6.29 -2.39 -0.02 1.44 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 2.18 7.00 -2.39 -0.02 2.16 16 33 H 0.13 2.01 6.81 -2.39 -0.02 2.00 16 34 H 0.08 1.31 7.93 -2.39 -0.02 1.29 16 35 H 0.09 1.13 8.10 -2.38 -0.02 1.11 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.06 0.68 7.34 -2.39 -0.02 0.66 16 39 H 0.05 0.70 7.96 -2.39 -0.02 0.68 16 40 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.07 1.27 8.10 -2.38 -0.02 1.25 16 43 H 0.07 1.67 7.41 -2.39 -0.02 1.65 16 44 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.11 1.81 5.68 -2.39 -0.01 1.79 16 46 H 0.07 2.11 7.15 -2.39 -0.02 2.10 16 47 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 49 H 0.02 0.96 6.14 -2.39 -0.01 0.94 16 50 H 0.36 18.41 5.68 -92.71 -0.53 17.89 16 51 H 0.25 14.93 6.77 -92.71 -0.63 14.31 16 Total: -1.00 -69.86 385.87 4.37 -65.50 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 0.51 Total: 31.82 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 5.82 Total: -15.84 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -3.96 Total: -116.06 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.05 Total: -19.23 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 2.05 Total: 53.81 kcal Total: -69.86 4.37 -65.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184297161.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.500 kcal (2) G-P(sol) polarization free energy of solvation -69.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds