Wall clock time and date at job start Fri Apr 10 2020 22:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 120.00604 * 2 1 4 4 C 1.52999 * 109.46824 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47342 * 240.00044 * 3 2 1 6 6 C 1.53006 * 109.47184 * 119.99819 * 3 2 1 7 7 C 1.50698 * 109.47184 * 180.02562 * 6 3 2 8 8 O 1.21282 * 120.00025 * 0.02562 * 7 6 3 9 9 N 1.34776 * 120.00035 * 179.97438 * 7 6 3 10 10 C 1.46927 * 120.62643 * 0.02562 * 9 7 6 11 11 C 1.53195 * 108.77151 * 126.37188 * 10 9 7 12 12 C 1.53037 * 109.31733 * 54.62854 * 11 10 9 13 13 H 1.09003 * 109.45734 * 58.65988 * 12 11 10 14 14 C 1.53001 * 109.45748 * 178.62750 * 12 11 10 15 15 N 1.46492 * 109.47380 * 295.00064 * 14 12 11 16 16 C 1.36941 * 120.00009 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00166 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99876 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00297 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99904 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47057 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46880 * 120.00258 * 20 18 16 23 23 H 1.48491 * 109.47520 * 240.00084 * 20 18 16 24 24 C 1.53042 * 109.53913 * 298.63654 * 12 11 10 25 25 H 1.08996 * 109.49562 * 181.31831 * 24 12 11 26 26 C 1.53000 * 109.49440 * 301.38305 * 24 12 11 27 27 C 1.46924 * 120.62824 * 179.72116 * 9 7 6 28 28 H 1.08002 * 119.99259 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.00307 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99535 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47160 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.46719 * 299.99679 * 4 3 2 33 33 H 1.08993 * 109.47839 * 59.99520 * 4 3 2 34 34 H 1.09001 * 109.47375 * 299.99730 * 5 3 2 35 35 H 1.09002 * 109.46777 * 60.00285 * 5 3 2 36 36 H 1.09000 * 109.47140 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.46801 * 300.00442 * 6 3 2 38 38 H 1.09001 * 109.46998 * 60.00038 * 6 3 2 39 39 H 1.09004 * 109.58544 * 246.14997 * 10 9 7 40 40 H 1.08987 * 109.58921 * 6.43461 * 10 9 7 41 41 H 1.08997 * 109.49468 * 174.58436 * 11 10 9 42 42 H 1.08997 * 109.49324 * 294.67288 * 11 10 9 43 43 H 1.08999 * 109.47154 * 55.00102 * 14 12 11 44 44 H 1.09003 * 109.46950 * 175.00140 * 14 12 11 45 45 H 0.96997 * 120.00181 * 0.02562 * 15 14 12 46 46 H 0.96994 * 120.00185 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.47665 * 60.00135 * 26 24 12 48 48 H 1.09004 * 109.46775 * 180.02562 * 26 24 12 49 49 H 1.08998 * 109.46903 * 299.99561 * 26 24 12 50 50 H 1.08990 * 109.58911 * 353.42413 * 27 9 7 51 51 H 1.09011 * 109.58259 * 113.84906 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0695 2.4680 0.0006 5 6 2.9432 1.3860 -1.2492 6 6 2.9433 1.3860 1.2493 7 6 3.6964 2.6913 1.2496 8 8 3.5443 3.4794 0.3404 9 7 4.5383 2.9833 2.2608 10 6 4.7326 2.0389 3.3694 11 6 6.2313 1.7609 3.5232 12 6 6.9777 3.0866 3.6886 13 1 6.5929 3.6134 4.5618 14 6 8.4708 2.8107 3.8768 15 7 8.6794 2.0889 5.1343 16 6 9.9448 1.7318 5.5171 17 1 10.7891 1.9827 4.8921 18 6 10.1425 1.0483 6.7090 19 7 9.1137 0.7429 7.4710 20 14 11.8686 0.5605 7.2307 21 1 12.8426 1.0169 6.2070 22 1 12.1889 1.1939 8.5352 23 1 11.9464 -0.9162 7.3652 24 6 6.7720 3.9489 2.4411 25 1 7.3230 4.8830 2.5497 26 6 7.2809 3.1959 1.2103 27 6 5.2841 4.2491 2.2720 28 1 -0.5399 0.9354 0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.6145 3.4119 0.0011 32 1 0.4425 2.4104 -0.8892 33 1 0.4431 2.4101 0.8907 34 1 3.6515 0.5575 -1.2492 35 1 2.3165 1.3284 -2.1392 36 1 3.4880 2.3301 -1.2494 37 1 2.3165 1.3283 2.1393 38 1 3.6515 0.5574 1.2493 39 1 4.3450 2.4727 4.2912 40 1 4.2065 1.1090 3.1538 41 1 6.3973 1.1377 4.4020 42 1 6.5984 1.2448 2.6362 43 1 8.8362 2.2068 3.0463 44 1 9.0140 3.7554 3.9057 45 1 7.9212 1.8638 5.6959 46 1 9.2518 0.2649 8.3036 47 1 6.7289 2.2623 1.1014 48 1 7.1346 3.8106 0.3221 49 1 8.3423 2.9786 1.3305 50 1 5.1238 4.7760 1.3315 51 1 4.9424 4.8672 3.1024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184485393.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:37 Heat of formation + Delta-G solvation = -32.404113 kcal Electronic energy + Delta-G solvation = -26798.778732 eV Core-core repulsion = 23311.775710 eV Total energy + Delta-G solvation = -3487.003022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 3.76 seconds Orbital eigenvalues (eV) -41.66682 -39.82430 -37.86220 -36.49188 -34.84504 -33.30195 -32.12023 -31.87476 -29.51509 -28.45796 -28.15876 -27.23110 -25.43691 -24.12000 -23.57070 -22.65622 -20.81878 -19.59369 -19.00563 -18.88039 -18.11518 -16.83637 -16.74088 -16.55263 -16.33697 -15.74476 -15.50907 -15.41513 -15.27444 -15.02700 -14.86938 -14.46516 -14.21547 -13.96384 -13.67000 -13.55861 -13.53331 -12.98880 -12.92176 -12.84301 -12.65780 -12.62596 -12.46150 -12.23148 -12.13996 -12.03164 -11.94617 -11.89643 -11.78815 -11.51290 -11.48083 -11.24659 -11.19730 -10.89209 -10.37019 -10.20782 -9.51314 -8.95500 -7.93970 -5.21307 1.44350 1.47874 1.48194 1.58049 1.70024 2.10760 2.56815 3.39701 3.52685 3.75062 3.77218 3.84825 3.88903 4.01161 4.08349 4.16333 4.26144 4.35145 4.40112 4.45986 4.48121 4.51782 4.66229 4.68210 4.73832 4.77961 4.79881 4.86660 4.87104 4.89689 4.99507 5.00620 5.09654 5.09989 5.14172 5.19893 5.20893 5.23728 5.25760 5.37414 5.47120 5.51119 5.54542 5.59399 5.70824 5.81315 5.97877 6.29407 6.51045 7.28146 7.36069 8.12828 8.36852 9.29535 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.022849 B = 0.002852 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.142386 B = 9815.333572 C =10426.856846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.152 4.152 3 C -0.019 4.019 4 C -0.150 4.150 5 C -0.145 4.145 6 C -0.127 4.127 7 C 0.515 3.485 8 O -0.563 6.563 9 N -0.605 5.605 10 C 0.111 3.889 11 C -0.121 4.121 12 C -0.078 4.078 13 H 0.066 0.934 14 C 0.159 3.841 15 N -0.742 5.742 16 C -0.243 4.243 17 H 0.071 0.929 18 C -0.073 4.073 19 N -0.966 5.966 20 Si 0.969 3.031 21 H -0.269 1.269 22 H -0.294 1.294 23 H -0.292 1.292 24 C -0.091 4.091 25 H 0.087 0.913 26 C -0.138 4.138 27 C 0.121 3.879 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.019 0.981 44 H 0.012 0.988 45 H 0.376 0.624 46 H 0.251 0.749 47 H 0.050 0.950 48 H 0.055 0.945 49 H 0.051 0.949 50 H 0.086 0.914 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.020 1.732 -14.894 22.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.170 4.170 3 C -0.019 4.019 4 C -0.207 4.207 5 C -0.203 4.203 6 C -0.167 4.167 7 C 0.305 3.695 8 O -0.443 6.443 9 N -0.338 5.338 10 C -0.011 4.011 11 C -0.159 4.159 12 C -0.097 4.097 13 H 0.084 0.916 14 C 0.032 3.968 15 N -0.385 5.385 16 C -0.375 4.375 17 H 0.088 0.912 18 C -0.265 4.265 19 N -0.617 5.617 20 Si 0.798 3.202 21 H -0.194 1.194 22 H -0.221 1.221 23 H -0.220 1.220 24 C -0.110 4.110 25 H 0.105 0.895 26 C -0.195 4.195 27 C -0.002 4.002 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.096 0.904 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.037 0.963 44 H 0.030 0.970 45 H 0.209 0.791 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.104 0.896 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.909 2.151 -15.403 22.974 hybrid contribution 1.006 -0.456 0.890 1.418 sum -15.902 1.695 -14.513 21.596 Atomic orbital electron populations 1.24145 0.96066 1.02663 1.00188 1.22951 0.96153 0.97309 1.00590 1.19356 0.94762 0.93709 0.94116 1.22100 0.98453 0.98856 1.01257 1.21985 0.99298 1.02555 0.96415 1.21794 0.99395 0.94924 1.00558 1.20988 0.79027 0.88941 0.80523 1.90550 1.65724 1.51840 1.36187 1.48199 1.42821 1.19803 1.22969 1.21856 0.95962 0.93744 0.89525 1.21845 0.94840 0.97115 1.02142 1.21173 0.94411 0.96436 0.97665 0.91602 1.20842 0.94668 0.93757 0.87501 1.42566 1.05475 1.67901 1.22535 1.19626 0.86752 1.28402 1.02699 0.91150 1.25486 1.00770 1.02345 0.97940 1.69797 1.30348 1.47013 1.14554 0.85137 0.80156 0.77186 0.77673 1.19393 1.22078 1.21966 1.21319 0.95919 0.99292 0.94485 0.89481 1.21789 1.00686 1.00195 0.96855 1.21489 0.90110 0.85588 1.03011 0.87900 0.87489 0.86605 0.91671 0.92617 0.92588 0.92929 0.92950 0.91573 0.87431 0.87642 0.90415 0.87618 0.91856 0.91753 0.96279 0.96959 0.79144 0.94008 0.93093 0.92586 0.93030 0.89598 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.62 13.70 67.78 0.93 -1.69 16 2 C -0.15 -2.26 8.76 25.65 0.22 -2.03 16 3 C -0.02 -0.33 0.74 -52.93 -0.04 -0.37 16 4 C -0.15 -2.80 6.83 71.98 0.49 -2.31 16 5 C -0.15 -2.88 8.16 71.98 0.59 -2.29 16 6 C -0.13 -2.16 3.10 29.85 0.09 -2.06 16 7 C 0.51 11.48 7.11 87.66 0.62 12.10 16 8 O -0.56 -15.45 10.76 -3.04 -0.03 -15.48 16 9 N -0.61 -13.07 2.42 -819.81 -1.98 -15.06 16 10 C 0.11 2.27 6.35 86.36 0.55 2.81 16 11 C -0.12 -3.29 4.91 30.67 0.15 -3.14 16 12 C -0.08 -2.30 1.96 -10.77 -0.02 -2.32 16 13 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 14 C 0.16 6.13 5.18 86.38 0.45 6.58 16 15 N -0.74 -36.65 5.32 -343.46 -1.83 -38.48 16 16 C -0.24 -13.44 9.99 84.03 0.84 -12.60 16 17 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 18 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 19 N -0.97 -57.89 13.06 21.65 0.28 -57.61 16 20 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 22 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 24 C -0.09 -2.20 2.71 -10.87 -0.03 -2.23 16 25 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 26 C -0.14 -3.42 8.37 71.98 0.60 -2.81 16 27 C 0.12 2.70 5.78 86.21 0.50 3.19 16 28 H 0.10 1.38 5.69 -2.91 -0.02 1.36 16 29 H 0.11 1.17 8.06 -2.91 -0.02 1.15 16 30 H 0.12 1.52 8.06 -2.91 -0.02 1.50 16 31 H 0.06 1.53 5.51 -2.39 -0.01 1.52 16 32 H 0.05 0.97 7.50 -2.39 -0.02 0.96 16 33 H 0.06 0.94 7.50 -2.39 -0.02 0.92 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.62 5.51 -2.39 -0.01 1.61 16 37 H 0.11 1.52 7.94 -2.39 -0.02 1.50 16 38 H 0.11 1.57 7.70 -2.39 -0.02 1.55 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.11 1.67 5.93 -2.39 -0.01 1.66 16 41 H 0.06 2.05 7.15 -2.39 -0.02 2.04 16 42 H 0.06 1.79 6.34 -2.39 -0.02 1.77 16 43 H 0.02 0.76 6.74 -2.39 -0.02 0.74 16 44 H 0.01 0.49 8.14 -2.39 -0.02 0.48 16 45 H 0.38 19.44 6.85 -92.71 -0.63 18.81 16 46 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 47 H 0.05 1.30 5.98 -2.39 -0.01 1.29 16 48 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.05 1.36 6.58 -2.39 -0.02 1.35 16 50 H 0.09 2.05 7.01 -2.39 -0.02 2.03 16 51 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -64.39 378.88 5.14 -59.25 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.26 Total: 32.42 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 6.41 Total: -12.84 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -3.53 Total: -111.14 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.03 Total: -15.48 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -64.39 5.14 -59.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184485393.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.847 kcal (2) G-P(sol) polarization free energy of solvation -64.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.76 seconds