Wall clock time and date at job start Fri Apr 10 2020 22:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.52445 * 2 1 4 4 C 1.53186 * 109.49937 * 239.91661 * 2 1 3 5 5 N 1.46927 * 108.77753 * 294.68234 * 4 2 1 6 6 C 1.34771 * 120.63401 * 126.36415 * 5 4 2 7 7 O 1.21290 * 120.00109 * 354.95632 * 6 5 4 8 8 C 1.50694 * 120.00335 * 174.95327 * 6 5 4 9 9 C 1.53005 * 110.01805 * 301.01203 * 8 6 5 10 10 C 1.54270 * 110.03471 * 179.62171 * 8 6 5 11 11 C 1.54963 * 104.16079 * 217.13616 * 10 8 6 12 12 C 1.54891 * 102.77966 * 37.88666 * 11 10 8 13 13 C 1.53875 * 110.03317 * 62.40357 * 8 6 5 14 14 C 1.46926 * 118.73706 * 306.39532 * 5 4 2 15 15 C 1.53194 * 108.77754 * 53.60427 * 14 5 4 16 16 C 1.53036 * 109.49850 * 120.07643 * 2 1 3 17 17 H 1.09001 * 109.45077 * 178.60274 * 16 2 1 18 18 C 1.53003 * 109.46425 * 298.56873 * 16 2 1 19 19 N 1.46493 * 109.47456 * 185.07124 * 18 16 2 20 20 C 1.36936 * 120.00139 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99846 * 359.97438 * 20 19 18 22 22 C 1.38813 * 120.00240 * 179.97438 * 20 19 18 23 23 N 1.31613 * 119.99878 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99911 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46877 * 179.97438 * 24 22 20 26 26 H 1.48503 * 109.46929 * 299.99270 * 24 22 20 27 27 H 1.48496 * 109.47524 * 59.99862 * 24 22 20 28 28 H 1.09000 * 109.47450 * 299.91869 * 1 2 3 29 29 H 1.08995 * 109.47416 * 59.92190 * 1 2 3 30 30 H 1.08999 * 109.47081 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.59041 * 174.89616 * 4 2 1 32 32 H 1.09004 * 109.70467 * 54.53899 * 4 2 1 33 33 H 1.09005 * 109.46455 * 66.23179 * 9 8 6 34 34 H 1.09000 * 109.47569 * 186.23051 * 9 8 6 35 35 H 1.09000 * 109.47100 * 306.23584 * 9 8 6 36 36 H 1.08991 * 110.48915 * 335.78364 * 10 8 6 37 37 H 1.09001 * 110.48477 * 98.43080 * 10 8 6 38 38 H 1.09002 * 110.72141 * 279.57591 * 11 10 8 39 39 H 1.08996 * 110.92724 * 156.29808 * 11 10 8 40 40 H 1.09001 * 110.49034 * 203.40602 * 12 11 10 41 41 H 1.09004 * 110.59779 * 80.81716 * 12 11 10 42 42 H 1.08996 * 110.03309 * 238.56977 * 13 8 6 43 43 H 1.08997 * 110.03343 * 0.02562 * 13 8 6 44 44 H 1.09000 * 109.58318 * 293.81374 * 14 5 4 45 45 H 1.08996 * 109.58693 * 173.39439 * 14 5 4 46 46 H 1.08997 * 109.49410 * 185.41524 * 15 14 5 47 47 H 1.08995 * 109.52276 * 65.33203 * 15 14 5 48 48 H 1.09000 * 109.46931 * 65.06116 * 18 16 2 49 49 H 1.09008 * 109.46422 * 305.07055 * 18 16 2 50 50 H 0.96993 * 120.00278 * 359.97438 * 19 18 16 51 51 H 0.97005 * 120.00429 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 1.6516 -2.1382 -1.1695 6 6 0.9740 -2.7219 -2.1777 7 8 0.6003 -2.0582 -3.1215 8 6 0.6807 -4.1994 -2.1324 9 6 1.9875 -4.9904 -2.0454 10 6 -0.1089 -4.6201 -3.3892 11 6 -1.1066 -5.6865 -2.8706 12 6 -1.5151 -5.1283 -1.4848 13 6 -0.2127 -4.5226 -0.9220 14 6 2.0140 -2.9040 0.0310 15 6 1.5029 -2.1557 1.2662 16 6 2.0407 -0.7230 1.2484 17 1 3.1305 -0.7442 1.2351 18 6 1.5606 0.0171 2.4984 19 7 2.1480 -0.6026 3.6888 20 6 1.8593 -0.1068 4.9321 21 1 1.1988 0.7415 5.0351 22 6 2.4155 -0.6944 6.0601 23 7 3.2199 -1.7285 5.9345 24 14 2.0221 -0.0175 7.7561 25 1 2.7354 -0.8158 8.7853 26 1 2.4594 1.3994 7.8372 27 1 0.5586 -0.0983 7.9942 28 1 -0.3634 0.5126 0.8907 29 1 -0.3634 0.5150 -0.8892 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1274 -0.6463 -1.2980 32 1 1.6027 -0.2738 -2.1402 33 1 2.4722 -4.7872 -1.0904 34 1 1.7732 -6.0561 -2.1246 35 1 2.6482 -4.6911 -2.8590 36 1 -0.6447 -3.7676 -3.8063 37 1 0.5602 -5.0525 -4.1331 38 1 -0.6171 -6.6550 -2.7679 39 1 -1.9730 -5.7611 -3.5277 40 1 -1.8721 -5.9314 -0.8401 41 1 -2.2790 -4.3581 -1.5916 42 1 0.2844 -5.2436 -0.2730 43 1 -0.4345 -3.6108 -0.3675 44 1 3.0979 -3.0042 0.0869 45 1 1.5554 -3.8918 -0.0135 46 1 1.8480 -2.6627 2.1672 47 1 0.4132 -2.1354 1.2548 48 1 0.4737 -0.0385 2.5586 49 1 1.8685 1.0614 2.4430 50 1 2.7409 -1.3647 3.5963 51 1 3.4245 -2.0798 5.0538 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184882528.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:39 Heat of formation + Delta-G solvation = -41.036183 kcal Electronic energy + Delta-G solvation = -27605.979136 eV Core-core repulsion = 24118.601799 eV Total energy + Delta-G solvation = -3487.377337 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.13270 -38.76934 -37.27470 -35.18682 -33.72340 -32.05440 -31.17956 -30.21987 -29.01335 -26.94932 -26.75076 -25.66506 -23.59543 -23.08615 -22.16164 -21.04166 -20.93445 -19.21343 -18.26272 -17.24971 -16.80282 -16.30645 -15.82522 -15.20366 -14.92637 -14.67207 -14.54703 -14.19185 -13.99810 -13.71506 -13.57911 -13.51118 -13.02469 -12.94291 -12.70285 -12.60481 -12.34165 -12.24057 -11.82679 -11.58286 -11.45449 -11.29686 -11.17105 -11.10058 -10.96847 -10.85246 -10.74382 -10.70998 -10.69125 -10.36611 -10.17346 -10.13168 -9.95045 -9.56369 -9.16914 -8.86847 -8.57726 -6.99032 -6.10716 -3.09628 2.59790 2.95776 3.51325 3.54698 3.72085 4.16726 4.26587 4.41960 4.65593 4.68251 4.82516 4.92445 4.96275 5.00561 5.05829 5.09324 5.15288 5.20507 5.25719 5.38506 5.42801 5.51596 5.54509 5.58424 5.61580 5.66662 5.69160 5.69885 5.75605 5.78743 5.82101 5.82685 5.89229 5.94487 5.98482 6.01236 6.04824 6.15382 6.18602 6.23749 6.32702 6.37665 6.46551 6.59938 6.73875 6.86504 7.40364 7.81189 8.15366 8.75703 9.23643 10.09875 10.25259 11.37942 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.020115 B = 0.003400 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.695164 B = 8233.392582 C = 8820.598555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.080 0.920 4 C 0.116 3.884 5 N -0.602 5.602 6 C 0.527 3.473 7 O -0.547 6.547 8 C -0.084 4.084 9 C -0.147 4.147 10 C -0.106 4.106 11 C -0.124 4.124 12 C -0.124 4.124 13 C -0.118 4.118 14 C 0.092 3.908 15 C -0.127 4.127 16 C -0.089 4.089 17 H 0.069 0.931 18 C 0.164 3.836 19 N -0.743 5.743 20 C -0.330 4.330 21 H 0.063 0.937 22 C -0.046 4.046 23 N -0.945 5.945 24 Si 1.079 2.921 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.296 1.296 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.022 0.978 49 H 0.017 0.983 50 H 0.366 0.634 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 -7.111 -18.479 20.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.099 0.901 4 C -0.006 4.006 5 N -0.334 5.334 6 C 0.315 3.685 7 O -0.425 6.425 8 C -0.087 4.087 9 C -0.204 4.204 10 C -0.143 4.143 11 C -0.161 4.161 12 C -0.161 4.161 13 C -0.156 4.156 14 C -0.030 4.030 15 C -0.165 4.165 16 C -0.108 4.108 17 H 0.088 0.912 18 C 0.037 3.963 19 N -0.389 5.389 20 C -0.461 4.461 21 H 0.081 0.919 22 C -0.243 4.243 23 N -0.591 5.591 24 Si 0.910 3.090 25 H -0.210 1.210 26 H -0.223 1.223 27 H -0.223 1.223 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.115 0.885 46 H 0.101 0.899 47 H 0.087 0.913 48 H 0.040 0.960 49 H 0.035 0.965 50 H 0.199 0.801 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.290 -6.736 -17.307 19.311 hybrid contribution 0.001 0.123 -1.504 1.509 sum -5.289 -6.613 -18.811 20.629 Atomic orbital electron populations 1.21841 0.94875 1.01890 1.01436 1.21446 0.96680 0.99416 0.94150 0.90140 1.21667 0.99216 0.80582 0.99164 1.48006 1.55897 1.11365 1.18162 1.20520 0.76711 0.89588 0.81678 1.90641 1.52173 1.65232 1.34414 1.21407 0.97449 0.91807 0.98020 1.22129 0.95158 1.00088 1.02998 1.22373 0.97457 0.99260 0.95240 1.22507 0.98839 0.98283 0.96477 1.22361 0.97088 1.00182 0.96517 1.22403 0.95545 1.01546 0.96069 1.22266 1.00450 0.95959 0.84345 1.21973 1.01445 0.96027 0.97069 1.21317 1.00091 0.94737 0.94672 0.91250 1.20646 0.95884 0.94587 0.85206 1.42380 1.57213 1.37490 1.01783 1.20035 1.27053 1.13714 0.85264 0.91911 1.25743 0.98229 0.97987 1.02340 1.70892 1.37945 1.25240 1.24997 0.83252 0.75389 0.74921 0.75446 1.21031 1.22314 1.22306 0.92057 0.93262 0.92694 0.91725 0.89210 0.91098 0.91339 0.92259 0.89742 0.91390 0.91495 0.91418 0.91316 0.91509 0.90406 0.90969 0.91419 0.88484 0.89934 0.91291 0.96013 0.96478 0.80079 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.38 37.15 0.31 -1.62 16 2 C -0.10 -1.29 2.72 -90.51 -0.25 -1.53 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.12 1.46 5.84 -3.71 -0.02 1.44 16 5 N -0.60 -7.41 2.40 -172.77 -0.41 -7.83 16 6 C 0.53 6.92 6.28 -10.99 -0.07 6.85 16 7 O -0.55 -8.90 14.82 5.55 0.08 -8.82 16 8 C -0.08 -0.86 0.61 -154.54 -0.10 -0.95 16 9 C -0.15 -1.26 7.81 37.16 0.29 -0.97 16 10 C -0.11 -1.04 5.70 -25.03 -0.14 -1.19 16 11 C -0.12 -1.00 6.91 -24.70 -0.17 -1.17 16 12 C -0.12 -1.08 6.83 -25.07 -0.17 -1.25 16 13 C -0.12 -1.13 4.33 -25.61 -0.11 -1.24 16 14 C 0.09 1.06 4.12 -3.71 -0.02 1.04 16 15 C -0.13 -1.80 4.90 -26.61 -0.13 -1.93 16 16 C -0.09 -1.37 1.96 -90.58 -0.18 -1.55 16 17 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 18 C 0.16 3.26 5.18 -4.04 -0.02 3.24 16 19 N -0.74 -18.38 5.32 -59.91 -0.32 -18.70 16 20 C -0.33 -9.30 9.99 -15.06 -0.15 -9.46 16 21 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 22 C -0.05 -1.32 5.50 -17.43 -0.10 -1.42 16 23 N -0.94 -28.88 13.70 55.49 0.76 -28.12 16 24 Si 1.08 25.88 29.92 -169.99 -5.09 20.79 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 28 H 0.06 0.87 6.58 -51.93 -0.34 0.52 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.77 5.97 -51.93 -0.31 0.46 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 33 H 0.07 0.59 5.23 -51.93 -0.27 0.32 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 1.01 6.88 -51.93 -0.36 0.65 16 37 H 0.07 0.62 7.84 -51.93 -0.41 0.21 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.66 7.04 -51.93 -0.37 0.29 16 43 H 0.07 0.80 6.77 -51.93 -0.35 0.44 16 44 H 0.07 0.75 8.12 -51.93 -0.42 0.32 16 45 H 0.10 0.97 2.88 -51.93 -0.15 0.82 16 46 H 0.08 1.33 7.15 -51.93 -0.37 0.96 16 47 H 0.07 1.01 6.15 -51.93 -0.32 0.69 16 48 H 0.02 0.45 6.74 -51.93 -0.35 0.10 16 49 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 50 H 0.37 9.12 5.68 -40.82 -0.23 8.89 16 51 H 0.25 7.58 6.78 -40.82 -0.28 7.30 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -32.39 368.73 -9.18 -41.57 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -8.75 Total: 7.25 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -1.02 Total: -11.70 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.03 Total: -54.65 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.08 Total: -8.82 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -5.09 Total: 20.79 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.39 -9.18 -41.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184882528.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.531 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds